mRNA_P-littoralis_Contig900.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig900.13.1
Unique NamemRNA_P-littoralis_Contig900.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig900.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig900contigP-littoralis_Contig900:10706..11957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size390
Hectar predicted targeting categoryother localisation
Exons2
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791808.942599-CDS-P-littoralis_Contig900:10705..109081680791808.942599-CDS-P-littoralis_Contig900:10705..10908Pylaiella littoralis U1_48CDSP-littoralis_Contig900 10706..10908 +
1680791808.959946-CDS-P-littoralis_Contig900:11770..119571680791808.959946-CDS-P-littoralis_Contig900:11770..11957Pylaiella littoralis U1_48CDSP-littoralis_Contig900 11771..11957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig900.13.1prot_P-littoralis_Contig900.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig900 10706..11957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig900.13.1

>prot_P-littoralis_Contig900.13.1 ID=prot_P-littoralis_Contig900.13.1|Name=mRNA_P-littoralis_Contig900.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MNDLRCKLLAEVETLRNATRANDDGGVDDGEDPVGFRAARVLVGLVDKWR
VLPIGGGNTAADKVFTQRMLENVQVWAIDCLGDIPSPATITSAQDARRYL
KPYLFKPRSDVDDDSSGSDDDSEPQYFSYE
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mRNA from alignment at P-littoralis_Contig900:10706..11957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig900.13.1 ID=mRNA_P-littoralis_Contig900.13.1|Name=mRNA_P-littoralis_Contig900.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1252bp|location=Sequence derived from alignment at P-littoralis_Contig900:10706..11957+ (Pylaiella littoralis U1_48)
ATGAACGACCTGAGGTGCAAGCTGCTCGCCGAAGTGGAGACACTTCGCAA
CGCGACCCGCGCCAACGACGATGGTGGTGTGGATGATGGGGAGGACCCCG
TAGGGTTCCGTGCGGCACGGGTGCTCGTGGGTCTGGTGGACAAGTGGAGG
GTGCTCCCTATCGGCGGTGGAAACACCGCCGCCGACAAGGTGTTCACCCA
GAGGTGCGTGCCCGAATAGAACCCCATCGTGTACTACCTCGGCGAGCGCT
CTGTAGTGTCATGTGTACACGTGCGGTAGGTGCATGTATTTTCTGGGGTG
GCACCTAACCTGTACCTGGTATATCCACACCTCAGATGAGCTGTAGCGGT
ACATGCGTGTTTGTAGATATTTTTTTCGGTTATCACATGTCAAATCAACC
CGACGTTGTCCTGGCTTGATGTTTGTGTGTGTGTGCTTTAAATCATATTT
CATAGAGCAAAGGAGGACACCTCACACGCACGACACATCCACTTGTGGCT
GCTGTGGAAGAGTTGACACAATTTTTTGTGTGTCTTGCTTTTGACTATTG
GCTCTTCTGCAGCAGCTACAGCTAAAGCAGGACATGGCAGGGAGCAATCG
ACGTCTTGTGTATGATGTGGTGTGTTGCCTCTTCTTGTAGCACAGCAGCA
ACTAGGTATGTTTGTTACAGCAGGTCGCATTTCCGTCACGTATTCTGGCA
CCGTGCACTTTCTACTGCGACCGCTGGAAGACTCAGTGCCGGCTCTTCTA
CAACAGCAGCAGTTGTGTATATGTTGCGTGTGCACGTTTGTTTTCTGTGT
GCGGGAGGCCATCGCCACCCAGCCGAGTGCGTGATGACGCGAGGCCCCAA
AAACGTCTTTGCTTCCTGTGCAGTTTTTCCCTTTCATCAATAGGATGGTT
GCCAACTATGACATCCTTTTCGGCAAGCACTCCACTTGGAGTTGTACAGG
AATATGTATATTTATATTTACGCTTGTTCCCGTTGAGGTTATTGAAAAGC
TGATTAATGCTGGCTCGCTGTTGACAACACTGTCTTTCGTCCATGGGATC
TGACCAAACGCGCAGGATGCTAGAAAATGTTCAGGTTTGGGCGATCGACT
GCCTGGGTGACATCCCCTCCCCGGCGACCATCACCTCCGCGCAAGACGCG
CGCAGGTACCTCAAGCCGTACCTCTTCAAGCCTCGCTCGGATGTGGACGA
CGACTCGTCGGGCAGCGACGACGACTCGGAGCCGCAGTACTTTTCGTACG
AA
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Coding sequence (CDS) from alignment at P-littoralis_Contig900:10706..11957+

>mRNA_P-littoralis_Contig900.13.1 ID=mRNA_P-littoralis_Contig900.13.1|Name=mRNA_P-littoralis_Contig900.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig900:10706..11957+ (Pylaiella littoralis U1_48)
ATGAACGACCTGAGGTGCAAGCTGCTCGCCGAAGTGGAGACACTTCGCAA
CGCGACCCGCGCCAACGACGATGGTGGTGTGGATGATGGGGAGGACCCCG
TAGGGTTCCGTGCGGCACGGGTGCTCGTGGGTCTGGTGGACAAGTGGAGG
GTGCTCCCTATCGGCGGTGGAAACACCGCCGCCGACAAGGTGTTCACCCA
GAGGATGCTAGAAAATGTTCAGGTTTGGGCGATCGACTGCCTGGGTGACA
TCCCCTCCCCGGCGACCATCACCTCCGCGCAAGACGCGCGCAGGTACCTC
AAGCCGTACCTCTTCAAGCCTCGCTCGGATGTGGACGACGACTCGTCGGG
CAGCGACGACGACTCGGAGCCGCAGTACTTTTCGTACGAA
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