mRNA_P-littoralis_Contig90.145.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.145.1
Unique NamemRNA_P-littoralis_Contig90.145.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.145.1 vs. uniprot
Match: A0A6H5K3Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.510e-18
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   97 MATTSHPHTPHTKPKRRRDAAMENFGLGSDDEDFCTPPGVTRKVRPTTPLAPRSPNAATA 276
            MAT+S+P TP  +PKR+RD  +E  GLG DD+DFCTPPGVTR+V  TTPL PRSPNAAT+
Sbjct:    1 MATSSNPRTPLREPKRKRDTGLEISGLGPDDDDFCTPPGVTRRVANTTPLTPRSPNAATS 60
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BLAST of mRNA_P-littoralis_Contig90.145.1 vs. uniprot
Match: D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.580e-14
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   97 MATTSHPHTPHTKPKRRRDAAMENFGLGSDDEDFCTPPGVTRKVRPTTPLAPRSPNAATAP 279
            M T+S+P +P  +PKR+RD  ++ FGLGSDD+DFCTPPG TRKVRPTTP       AA +P
Sbjct:    1 MTTSSNPRSPLREPKRKRDTDLDFFGLGSDDDDFCTPPGATRKVRPTTPXXXXXXXAAASP 61
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BLAST of mRNA_P-littoralis_Contig90.145.1 vs. uniprot
Match: A0A6H5JCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.840e-8
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   97 MATTSHPHTPHTKPKRRRDAAMENFGLGSDDED 195
            MATTSHPHTP  +PK +RDAA++NFGLGSDDED
Sbjct:    1 MATTSHPHTPPREPKTKRDAALDNFGLGSDDED 33
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K3Q8_9PHAE4.510e-1868.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFC5_ECTSI1.580e-1459.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCN5_9PHAE2.840e-878.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:566089..566914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size299
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791808.537463-CDS-P-littoralis_Contig90:566088..5661701680791808.537463-CDS-P-littoralis_Contig90:566088..566170Pylaiella littoralis U1_48CDSP-littoralis_Contig90 566089..566170 +
1680791808.550249-CDS-P-littoralis_Contig90:566511..5666211680791808.550249-CDS-P-littoralis_Contig90:566511..566621Pylaiella littoralis U1_48CDSP-littoralis_Contig90 566512..566621 +
1680791808.5607638-CDS-P-littoralis_Contig90:566809..5669141680791808.5607638-CDS-P-littoralis_Contig90:566809..566914Pylaiella littoralis U1_48CDSP-littoralis_Contig90 566810..566914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.145.1prot_P-littoralis_Contig90.145.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 566089..566914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.145.1

>prot_P-littoralis_Contig90.145.1 ID=prot_P-littoralis_Contig90.145.1|Name=mRNA_P-littoralis_Contig90.145.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
HFTLSLSSTPPEHQSQDRIGRLTVTKKATGTAMATTSHPHTPHTKPKRRR
DAAMENFGLGSDDEDFCTPPGVTRKVRPTTPLAPRSPNAATAPVYVGTT
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mRNA from alignment at P-littoralis_Contig90:566089..566914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.145.1 ID=mRNA_P-littoralis_Contig90.145.1|Name=mRNA_P-littoralis_Contig90.145.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=826bp|location=Sequence derived from alignment at P-littoralis_Contig90:566089..566914+ (Pylaiella littoralis U1_48)
CACTTCACGCTCTCCTTGTCGTCTACTCCACCAGAGCATCAAAGCCAAGA
TCGCATAGGAAGACTCACAGTAACAAAAAAAGGTTAGGCTGTGAAGACCG
CTCCTGGATGACAAGATGCACACCTTTTGTTTGGATTGAGCATTCGCTGC
CATGGCGGCATCGCGAAGCTCGTACGTTGTTGCCATCAGAGACCAGACTG
CTGCCCGACGAACCGAACGTAGACTTCGATGCCGTACCGCTTATCAATTT
GCCCAACCAACCGAACGTATACTTCGATGCCGTACTGCTCATCTATGTAA
TTCTGCGGCCGGTTCATAGTTTATCCTCTCCTACGCCTGTTGCACGGGTT
TTGCTGTACTTGGTACCGTCTTCGATCTCAGTGATCCCCATGCTTGCACA
TCTCCCGTACACGCTTACAATAGCAACAGGGACAGCCATGGCCACCACGA
GCCATCCTCACACTCCACACACGAAGCCGAAGAGGAGGAGGGATGCCGCC
ATGGAAAACTTCGGGCTAGGCTCGGATGATGAGGTAAGACCATCAGTGTG
GTGTGATAGACACGTTTTCCTTGCGATGTCGGGTCACACATCCTCAACAT
GAACCCACAGTGACACACACACACACACACACATGTGAGAATCAACAACA
ACAACAACACACACACAATCACACGATGATGCACCCTCTCCCCACCCGTG
CATCCGTCCGTGATCCCACAGGACTTTTGCACTCCCCCAGGGGTGACGCG
GAAAGTGAGACCCACGACACCTCTCGCCCCACGGTCCCCGAACGCAGCGA
CAGCACCGGTGTATGTCGGTACAACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:566089..566914+

>mRNA_P-littoralis_Contig90.145.1 ID=mRNA_P-littoralis_Contig90.145.1|Name=mRNA_P-littoralis_Contig90.145.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig90:566089..566914+ (Pylaiella littoralis U1_48)
CACTTCACGCTCTCCTTGTCGTCTACTCCACCAGAGCATCAAAGCCAAGA
TCGCATAGGAAGACTCACAGTAACAAAAAAAGCAACAGGGACAGCCATGG
CCACCACGAGCCATCCTCACACTCCACACACGAAGCCGAAGAGGAGGAGG
GATGCCGCCATGGAAAACTTCGGGCTAGGCTCGGATGATGAGGACTTTTG
CACTCCCCCAGGGGTGACGCGGAAAGTGAGACCCACGACACCTCTCGCCC
CACGGTCCCCGAACGCAGCGACAGCACCGGTGTATGTCGGTACAACA
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