mRNA_P-littoralis_Contig90.133.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.133.1
Unique NamemRNA_P-littoralis_Contig90.133.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.133.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.150e-21
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    4 GVSLMKERVLQLRSAVALGRLKPLGNRLFQVAAGKHSRIAVVLTLASTGSAEELQRERSVERNIQM 201
            GVSLMKERVLQLR+A+A  +LKPLGNRL QV AGK +RIAVVLTLASTGS EELQRER+VER+IQ+
Sbjct: 1281 GVSLMKERVLQLRNAIAREKLKPLGNRLVQVPAGKRTRIAVVLTLASTGSQEELQRERTVERHIQV 1346
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BLAST of mRNA_P-littoralis_Contig90.133.1 vs. uniprot
Match: A0A835YT04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.300e-12
Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   34 QLRSAVALGRLKPLGNR-LFQVAAGKHSRIAVVLTLASTGSAEELQRERSVERNIQMRLLNVNSSQLPPSLRR 249
            +L  AVA GRLKPL  + LFQV      ++AVVLT+   G  EELQRER+VER I MRLLNVNSS LP +LRR
Sbjct: 2372 ELSKAVADGRLKPLPQKQLFQVGV----QVAVVLTVKPAGGNEELQRERTVERTIHMRLLNVNSSHLPHNLRR 2440
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHH6_ECTSI2.150e-2180.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YT04_9STRA6.300e-1261.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:493499..494479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHH6
Model size268
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons3
Evalue5.7e-20
EggNOG OGs28MMI@1|root,2QU5A@2759|Eukaryota
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791807.625059-CDS-P-littoralis_Contig90:493498..4935671680791807.625059-CDS-P-littoralis_Contig90:493498..493567Pylaiella littoralis U1_48CDSP-littoralis_Contig90 493499..493567 -
1680791807.6406999-CDS-P-littoralis_Contig90:494024..4941291680791807.6406999-CDS-P-littoralis_Contig90:494024..494129Pylaiella littoralis U1_48CDSP-littoralis_Contig90 494025..494129 -
1680791807.6509025-CDS-P-littoralis_Contig90:494386..4944641680791807.6509025-CDS-P-littoralis_Contig90:494386..494464Pylaiella littoralis U1_48CDSP-littoralis_Contig90 494387..494464 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791807.6643088-UTR-P-littoralis_Contig90:494464..4944791680791807.6643088-UTR-P-littoralis_Contig90:494464..494479Pylaiella littoralis U1_48UTRP-littoralis_Contig90 494465..494479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.133.1prot_P-littoralis_Contig90.133.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 493499..494464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.133.1

>prot_P-littoralis_Contig90.133.1 ID=prot_P-littoralis_Contig90.133.1|Name=mRNA_P-littoralis_Contig90.133.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MKERVLQLRSAVALGRLKPLGNRLFQVAAGKHSRIAVVLTLASTGSAEEL
QRERSVERNIQMRLLNVNSSQLPPSLRRGAAAAS
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mRNA from alignment at P-littoralis_Contig90:493499..494479-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.133.1 ID=mRNA_P-littoralis_Contig90.133.1|Name=mRNA_P-littoralis_Contig90.133.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=981bp|location=Sequence derived from alignment at P-littoralis_Contig90:493499..494479- (Pylaiella littoralis U1_48)
CAGGGAGTCAGCCTGATGAAGGAAAGGGTGTTGCAGTTGAGGAGCGCCGT
CGCGCTGGGGAGGCTCAAGCCGCTGGGGAACCGTCTTTTTCAGGTATGAT
ATGAGGTTGACCCGACCGAGTGTCGTTCATTAGTTGGTCGGTCTTGGTCT
TGGTCTTGGTCTTCGTGGTGTTTCCGTTTTTGAGCCACGACCACCCACGC
ACAAGGATGCACGTCTACCGGTATAGTTACTGTTACAGAGTAATCGTTTT
GTCGTTGGACCCCGTTTTGTCGTTGGACCCCGTTTTGTCGTTGGACCCCA
TTTGTCGGTACGTCAATATGCATGCTCTCCTCCTCCCCCATTTCGCGCAG
GTGGCCGCGGGAAAACACTCCCGGATCGCCGTTGTGCTGACCCTTGCCAG
CACCGGCAGCGCGGAGGAGCTGCAGCGAGAACGCAGCGTGGAGAGAAATA
TTCAGGCGAGGATGGAGGATGCCCGGACCACTTGTATGTACCGCTCCCTC
CGCCTTGACGACTAAATTTTTCCCCAAACTGGATTGAAACACTCCGTCCC
CAGGATAAACGCATCGCTTGTGCTGCACCGCTGTGACGACTTCATTTTTC
CCAAGCTGGGAAGAAGCACTCTTGTCCCCAGCGGTATGGCACCGGTATCA
TAGCTGTTTACTGGTCGTATCGTATGATGCGTATGTACGTTCGGCGTACG
TACGTCAGAGAAAAATAGGGAAAAAAAAGGCTTGTTTTTTTATTCAAAGC
TTGAAGGGGGAGGGGGGGACGTTTACGCAACACACACACAACACATTTCG
AGACGCTTGCCAACGAAAATATTTCCCGGCACAGCAGTAGAAGACGATGC
CGACCAGGTTGTTTTGCCATCCTTTTCGACCCCCCCCCCCCCTCCGCGCG
GCATACACACAGATGCGGCTTCTCAACGTCAACTCCAGCCAACTCCCCCC
AAGCCTTCGCCGCGGGGCCGCCGCCGCGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:493499..494479-

>mRNA_P-littoralis_Contig90.133.1 ID=mRNA_P-littoralis_Contig90.133.1|Name=mRNA_P-littoralis_Contig90.133.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig90:493499..494479- (Pylaiella littoralis U1_48)
ATGAAGGAAAGGGTGTTGCAGTTGAGGAGCGCCGTCGCGCTGGGGAGGCT
CAAGCCGCTGGGGAACCGTCTTTTTCAGGTGGCCGCGGGAAAACACTCCC
GGATCGCCGTTGTGCTGACCCTTGCCAGCACCGGCAGCGCGGAGGAGCTG
CAGCGAGAACGCAGCGTGGAGAGAAATATTCAGATGCGGCTTCTCAACGT
CAACTCCAGCCAACTCCCCCCAAGCCTTCGCCGCGGGGCCGCCGCCGCGT
CG
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