mRNA_P-littoralis_Contig90.131.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.131.1
Unique NamemRNA_P-littoralis_Contig90.131.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.131.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.420e-62
Identity = 162/215 (75.35%), Postives = 167/215 (77.67%), Query Frame = 1 
Query:    1 AVSAPGIPEVERQRMEEKLEHYQFKLRIAERKGREAKVAKMYKKIDRMRRQLAGESLGS-DEGEETGMSEXXXXXXXXXXXXXXXXXXWXADXXXXXXXXGGIRRNSGGIGRLELSLDGD-------SEVAVGITVAFAPGASFQGWEGGHLFRGIIRLYESRNEDVVKELPCVTQVYSSALAYQAAVVPSLSTYFADDAEEPEVLSPLAQNAHP 621
            AVSAPGIPEVERQRMEEKLE YQFKLRIAERKGRE KVAKM+KKIDRMRRQLAGE+LGS DEGEETGMSEXXXXXXXXXXXXXXXXXX X  XXXXXXXX                           SEVAVGI V+F PGASFQGWEGGHLFRGIIRLYESRNEDVVKELPC  QVYSSALAYQAAVVP  S    D+ EE EVLSPL Q+  P
Sbjct: 1631 AVSAPGIPEVERQRMEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGEETGMSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEVAVGIAVSFTPGASFQGWEGGHLFRGIIRLYESRNEDVVKELPCFAQVYSSALAYQAAVVPPGSPSLVDETEELEVLSPLMQHQPP 1845
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BLAST of mRNA_P-littoralis_Contig90.131.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.500e-29
Identity = 63/83 (75.90%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:  373 GITVAFAPGASFQGWEGGHLFRGIIRLYESRNEDVVKELPCVTQVYSSALAYQAAVVPSLSTYFADDAEEPEVLSPLAQNAHP 621
            GI V+F PGASF+GWEGGHLFRGIIRLYESRNEDVVKELPC  QVYSSALAYQAAVVP  S    D+ E+ EVLSPL Q   P
Sbjct:   46 GIAVSFTPGASFKGWEGGHLFRGIIRLYESRNEDVVKELPCFAQVYSSALAYQAAVVPPGSPSLVDETEQLEVLSPLMQQQPP 128
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BLAST of mRNA_P-littoralis_Contig90.131.1 vs. uniprot
Match: A0A835YYQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.350e-8
Identity = 54/135 (40.00%), Postives = 72/135 (53.33%), Query Frame = 1 
Query:   46 EEKLEHYQFKLRIAERKGREAKVAKMYKKIDRMRRQLAG--ESLGSDEGEETGMSEXXXXXXXXXXXXXXXXXXWXADXXXXXXXXGGIRRNSGGIGRLELSLDGDSEVAVGITVAFAPGASFQGWEGGHLFRGI 444
            +EKLE Y FKLRIAERKGR+ K  K+  KI+++R +L G  +    D+ ++  M  XXXXXXXX            A            ++N      L  SLD DS   + ++V FAPGASFQ W+G   FR +
Sbjct:  122 QEKLEQYSFKLRIAERKGRDQKATKLLAKIEKIRHKLDGTADDQAGDDIDDMSMXXXXXXXXXXGRLTMSAA----AQRRLSINAPDRAKQNG-----LTFSLDADSVATITVSVMFAPGASFQDWDGKKTFRAL 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHH6_ECTSI2.420e-6275.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ8_9PHAE2.500e-2975.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYQ9_9STRA6.350e-840.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:485698..488749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHH6
Model size622
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.97e-63
EggNOG OGs28MMI@1|root,2QU5A@2759|Eukaryota
Cds size621
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791807.4733405-CDS-P-littoralis_Contig90:485698..4858151680791807.4733405-CDS-P-littoralis_Contig90:485698..485815Pylaiella littoralis U1_48CDSP-littoralis_Contig90 485699..485815 -
1680791807.4851613-CDS-P-littoralis_Contig90:486523..4866141680791807.4851613-CDS-P-littoralis_Contig90:486523..486614Pylaiella littoralis U1_48CDSP-littoralis_Contig90 486524..486614 -
1680791807.4951227-CDS-P-littoralis_Contig90:486896..4871171680791807.4951227-CDS-P-littoralis_Contig90:486896..487117Pylaiella littoralis U1_48CDSP-littoralis_Contig90 486897..487117 -
1680791807.5087388-CDS-P-littoralis_Contig90:487700..4878441680791807.5087388-CDS-P-littoralis_Contig90:487700..487844Pylaiella littoralis U1_48CDSP-littoralis_Contig90 487701..487844 -
1680791807.5199418-CDS-P-littoralis_Contig90:488701..4887491680791807.5199418-CDS-P-littoralis_Contig90:488701..488749Pylaiella littoralis U1_48CDSP-littoralis_Contig90 488702..488749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.131.1prot_P-littoralis_Contig90.131.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 485699..488749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.131.1

>prot_P-littoralis_Contig90.131.1 ID=prot_P-littoralis_Contig90.131.1|Name=mRNA_P-littoralis_Contig90.131.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=207bp
AVSAPGIPEVERQRMEEKLEHYQFKLRIAERKGREAKVAKMYKKIDRMRR
QLAGESLGSDEGEETGMSESESDSDAELQLRQRTGAGWGADGGGAGGVGG
GIRRNSGGIGRLELSLDGDSEVAVGITVAFAPGASFQGWEGGHLFRGIIR
LYESRNEDVVKELPCVTQVYSSALAYQAAVVPSLSTYFADDAEEPEVLSP
LAQNAHP
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mRNA from alignment at P-littoralis_Contig90:485698..488749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.131.1 ID=mRNA_P-littoralis_Contig90.131.1|Name=mRNA_P-littoralis_Contig90.131.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3052bp|location=Sequence derived from alignment at P-littoralis_Contig90:485698..488749- (Pylaiella littoralis U1_48)
GCCGTGTCCGCTCCTGGGATACCCGAGGTGGAACGTCAGCGCATGGAGGT
GCGCGTGTGCAAGCGGGCGTGCTGGCGGGCGGGGGGACGAGGGCAACCAC
TACTGTATTTTGTTGTTGACTTTAATATTTCTTTCGAGTCTGTATCAAGT
CACCGTGGATGGAGGCCACCCCCCCCCCTCCCCCTGAGCGGTACCCCATT
TATACAGCATTTATACAGTCTTTACAGTATATGGGATAATGCTGTTCTGT
TTTCTACTTCGAAGTATGTTGCTTCTGGCAGGGTTTTTTTGTACTCCTCG
TCAAGTGACTGACCACGGACTGATCTGAGGCGACTGCTGTAGCTACTGTG
ACAATCAGCAACAAACAACCGTATTCGCCTGAAAATTAGCCAAGTGTGAG
AACCAGCGCGAGGCTTTACAACCTTGTTGAGCTCTCCGCAGGATCTAGCC
CGTGGTCACTAATCAGCCGCAAAATTAACAAACCACAGCTGTACGTACGG
AGAGGACGGACACGGGCACGCACACCCCGGTGGTTTCTGGACAAAGTTGG
CGTAGTTGTCGTTTTAATGCCTGTAAAAGCTTGTGAACCCGTCACCTTTG
GCGTGACGTGATTGCTTTTCGTGACTGCGCTGATCGCTGTATATTTGTGT
CGTGTAGCCATGCGTCAAAATGCCAAATACTCCCCCCCCCCCTTCCCTTT
CTCTTCCTTCCCTCTTCCTCTCTCCGGTTAGTGTCGTTCTCGATCTAACG
TTAGCTTGACGCACATAAACACCGTCGACGTTGTTGTTCTCGATATACAG
CAGCTACAAGTACACGGTTTGACAACCTTCCGCTGCCCCCGACCCCCCCC
GCCCGCCCGCCCGCCCCGCCGCCTCTATACCTTTGTATCGACGCATTACC
ACCAGGAGAAACTGGAGCACTATCAGTTCAAACTTCGCATCGCCGAGCGG
AAAGGACGGGAGGCCAAGGTGGCCAAGATGTACAAGAAGATCGACAGGAT
GAGACGGCAGCTAGCCGGCGAGAGCCTCGGAAGCGACGAGGGCGAAGAGG
TGAGTACTGCTGTACATACCGTTAAAATGATCCACCGTTGTTGTATATTT
TGAAGATATCATAAGATACGCGTGTAGCGATGCAGATCCGAGACGCCACT
AACCCATCCCGTCATCCTCACACGATCAAAATGCACAAGAGTTTTCCCTT
TTCCTCTTCGGCCGTAAACCGGCATATGGTCGTAAAGGGACACGCCCACC
CCATCATGTACCATACCATACCCTATTGTATCGTATCGCACGATACCACA
CCGTACCATGCCATGCCTTACCATACCATACCATACCATACCTTACCATA
CCTTACCATGCCTTACCATACCATACCATACCATACCGTGCCGTACGATG
CCATGCCATACCATACCATACCATACCGTGCCGTACGATGTCATGCCATG
CTGTGCTATGCTTACCATATCATATCACATCATATCAGAACATACCGTAC
CGTACCATAATACCATACCACACCATACCATCAAAACGGGAAAAAAACTG
AAACGTACAATACGTTCATACCTCTCACTTCGTTTTGTGTTTATTTCTTC
TTTTGCCGGCAACAAACGAACGCAAAAAACAGACCGGCATGAGCGAGAGC
GAGTCGGACAGCGACGCCGAGCTGCAGCTGCGGCAGCGCACCGGCGCCGG
GTGGGGCGCCGACGGAGGGGGCGCGGGCGGTGTCGGCGGCGGCATCCGAA
GGAACAGCGGCGGGATCGGCAGGCTGGAACTCAGCCTGGACGGCGACAGC
GAGGTGGCGGTGGGGATTACCGTTGCCTTCGCCCCCGGAGCTTCCTTCCA
GGGGTAGGTGGTTCTCTCATCTCTCGTCGTGTGCGGAGACGGCGGGTTGT
ATCGGGAGGGTGGAGGGTGGAGGGTGGAGGGTGGAGGACGGAGAGCGAGT
TGCACCCCAGCGTACGATCAGACGGCCCAACGAAGACTACGGCATCCATG
GTTTTGGGAACACCCCCCCTCCCCCTCCCCCTCCCCTCCCGTCCCCTCCC
GCCCCGGTCAACACTGTTTTGTCACACGCCCCCCATCGTACACTCCCCAC
CCTCTCGTCCTCGTCCTTGTCCTCGTCCCTCTCAGGTGGGAGGGCGGCCA
CCTGTTTCGCGGGATTATTCGCCTTTACGAGTCTCGGAACGAAGACGTTG
TCAAGGAGCTCCCGTGCGTTACCCAGGTGGGCGCCGTGTTTTTTTTTTTT
TCTTGTATCATGCTCGGGGCAAATGCCGCTGCTGTACCACCGTAGGTATG
ATAGCTTGCGTTGGAAATATATCAACTCCGATAAAATGGTGCTTCACCCA
CGTATATACAACGTGGATTTCCAGAACGGATGAGCGGGGAAAGTGGGGAG
GGGGGGGGGGGGTCGCTTTTCACTTGTCTGAATATTGGCAGTTCTACTCT
CTCGCCCTGGTGTTGATTCGGACTACTGTACATGCAACTTTGTACCAGGT
ATCATATCATAGGTTGACTTTGGTTTTGCTTTTCATCCGTTTTTTTCGGC
TCGATTTAACCCTCGTGTGCAGCCCAGCCTGTCTCCGAACACGATTGCAC
CGCGAGCCGCAATCTTTTGCGTCCCAAGGGAAGAAACAATGACAACAAGC
AATTTGAGCCGCAATCCCTCGCTCTCTTCCCTTAGGTTCACGGCGCGCAT
CGGTATATACCTCGCCGCCTCCTCTCGTGGTGTCCGGCGTACATACGTAT
GAAACCGCCAAGTGCTTCAAGCGCAGACACTTTCACTCGCGGTTTCTGTG
CCCGGCGTACATATGATACCGCCAAGTGCTCCCAGGATAGACACTTTCGC
TGGCGCTTTTCTCCGTGTCTCCTTATCTCGACCGGCCCCTCATCCTCGCC
GCGTTTGCGCGCGCTCGTGCTCTTTTTCCCCCAGGTCTACAGCAGTGCTC
TCGCCTACCAGGCGGCCGTCGTGCCCTCATTAAGCACATATTTCGCGGAC
GATGCGGAAGAGCCGGAGGTTCTCTCCCCGCTTGCGCAAAACGCGCACCC
GC
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:485698..488749-

>mRNA_P-littoralis_Contig90.131.1 ID=mRNA_P-littoralis_Contig90.131.1|Name=mRNA_P-littoralis_Contig90.131.1|organism=Pylaiella littoralis U1_48|type=CDS|length=621bp|location=Sequence derived from alignment at P-littoralis_Contig90:485698..488749- (Pylaiella littoralis U1_48)
GCCGTGTCCGCTCCTGGGATACCCGAGGTGGAACGTCAGCGCATGGAGGA
GAAACTGGAGCACTATCAGTTCAAACTTCGCATCGCCGAGCGGAAAGGAC
GGGAGGCCAAGGTGGCCAAGATGTACAAGAAGATCGACAGGATGAGACGG
CAGCTAGCCGGCGAGAGCCTCGGAAGCGACGAGGGCGAAGAGACCGGCAT
GAGCGAGAGCGAGTCGGACAGCGACGCCGAGCTGCAGCTGCGGCAGCGCA
CCGGCGCCGGGTGGGGCGCCGACGGAGGGGGCGCGGGCGGTGTCGGCGGC
GGCATCCGAAGGAACAGCGGCGGGATCGGCAGGCTGGAACTCAGCCTGGA
CGGCGACAGCGAGGTGGCGGTGGGGATTACCGTTGCCTTCGCCCCCGGAG
CTTCCTTCCAGGGGTGGGAGGGCGGCCACCTGTTTCGCGGGATTATTCGC
CTTTACGAGTCTCGGAACGAAGACGTTGTCAAGGAGCTCCCGTGCGTTAC
CCAGGTCTACAGCAGTGCTCTCGCCTACCAGGCGGCCGTCGTGCCCTCAT
TAAGCACATATTTCGCGGACGATGCGGAAGAGCCGGAGGTTCTCTCCCCG
CTTGCGCAAAACGCGCACCCG
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