mRNA_P-littoralis_Contig90.129.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.129.1
Unique NamemRNA_P-littoralis_Contig90.129.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.129.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 4.320e-48
Identity = 92/119 (77.31%), Postives = 102/119 (85.71%), Query Frame = 1 
Query:   13 GSSASPGMFSLHSVSSLDVIVKVSWDNESARRLGVLPVL---SPAFLFRAESPGNGAQTAAVSPPAGEIAAVLHAGSTLDVSVKLDGTVRVPVGRWCVGAVLVTVIDQHHQQPASDGNL 360
            G +   GMFSLHSV+S D+IVKVSWD+ESARRLGVLP     +PAFLFRAESP NG QTAA SPPAG +AAVLHAGSTLDVSVKLDGTV VPVGRWCVGAV+VTVIDQHHQ P +DG++
Sbjct: 2246 GGATQTGMFSLHSVASQDIIVKVSWDDESARRLGVLPPAPAPAPAFLFRAESPANGVQTAAASPPAGVLAAVLHAGSTLDVSVKLDGTVSVPVGRWCVGAVVVTVIDQHHQ-PFNDGSV 2363
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BLAST of mRNA_P-littoralis_Contig90.129.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.560e-45
Identity = 89/116 (76.72%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:   13 GSSASPGMFSLHSVSSLDVIVKVSWDNESARRLGVLPVLSPAFLFRAESPGNGAQTAAVSPPAGEIAAVLHAGSTLDVSVKLDGTVRVPVGRWCVGAVLVTVIDQHHQQPASDGNL 360
            G +   GMFSLHSV+S D+IV  SWD+ESARRLGVLP  SPAFLFRAESP NG QTAA SPPAG +AAVLHAGSTLDVSVKLDGTV VPVGRWCVGAV+VTVI QH+Q P +DG++
Sbjct:  528 GGATQTGMFSLHSVASEDIIV--SWDDESARRLGVLPAPSPAFLFRAESPANGVQTAAASPPAGVLAAVLHAGSTLDVSVKLDGTVSVPVGRWCVGAVVVTVIGQHYQ-PFNDGSV 640
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHH6_ECTSI4.320e-4877.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ8_9PHAE1.560e-4576.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:481474..483113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHH6
Model size361
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.08e-49
EggNOG OGs28MMI@1|root,2QU5A@2759|Eukaryota
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791807.3817081-CDS-P-littoralis_Contig90:481474..4815441680791807.3817081-CDS-P-littoralis_Contig90:481474..481544Pylaiella littoralis U1_48CDSP-littoralis_Contig90 481475..481544 -
1680791807.3928974-CDS-P-littoralis_Contig90:481994..4822061680791807.3928974-CDS-P-littoralis_Contig90:481994..482206Pylaiella littoralis U1_48CDSP-littoralis_Contig90 481995..482206 -
1680791807.4057202-CDS-P-littoralis_Contig90:483035..4831131680791807.4057202-CDS-P-littoralis_Contig90:483035..483113Pylaiella littoralis U1_48CDSP-littoralis_Contig90 483036..483113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.129.1prot_P-littoralis_Contig90.129.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 481475..483113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.129.1

>prot_P-littoralis_Contig90.129.1 ID=prot_P-littoralis_Contig90.129.1|Name=mRNA_P-littoralis_Contig90.129.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
VAAGGSSASPGMFSLHSVSSLDVIVKVSWDNESARRLGVLPVLSPAFLFR
AESPGNGAQTAAVSPPAGEIAAVLHAGSTLDVSVKLDGTVRVPVGRWCVG
AVLVTVIDQHHQQPASDGNL
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mRNA from alignment at P-littoralis_Contig90:481474..483113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.129.1 ID=mRNA_P-littoralis_Contig90.129.1|Name=mRNA_P-littoralis_Contig90.129.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1640bp|location=Sequence derived from alignment at P-littoralis_Contig90:481474..483113- (Pylaiella littoralis U1_48)
GTAGCCGCCGGGGGTAGCAGCGCGTCCCCGGGGATGTTCTCACTGCATTC
GGTGTCCTCCCTGGATGTAATTGTAAAGGCGAGTGTTGTTTGTTTGTTTG
TTTGTTTCGGACTAGGAAAGTTTTTTTTTTCGCGCGACGCGACCTTAAGG
TATGTATCGCTTTCGGGCGAAGCAAAACCGCTGGCAGTGCTCTCAGACGG
CAAAACGGGCAGCATGGCAGGCACGCAGCTTCATACCTGATGTACATTCA
CACGGACCCTTTTTTTATTTATTTTCGGAAGAGAGCACTTGTTTTTTGTG
TGCGCTCACACACCCACCCGCTGCCAGCTGTTATATCCCTCTTCCTTAAA
TCTCTTGAGACCAGGTTCTTCTGTGTTATGTATGTATGCATGTGTGTTGT
CATCCCATGTTCTCTGGCACACTAGTCTGCAAACTACAGGCTAGGCCCAT
CGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACC
TTCCTTCTGCGGTACATGCGTGAGATTTTTTCTCGCGAGCAGGGGTCCGC
GGTCCCTACCCTCGTCGGCGAAGCCGAATCTGCTTTTACTAACAGCATAG
CCGCTTTCAAAGTAGCAAAGGAACACATTCACCGGGAATCGAACCCCCGT
TCCTCTGCATCTAGTGGTTAACGAGGGACCACTAGTCCACCGGGGCGACC
GGTGTGTGTATATATGTATGTATGTATGTATGTATGTATGCACCTTCAAC
CATGTTATAACACACCGGCCGCTTCTCACTCTCCAATTTCGTCATTCATC
TCTGTATGTACTATGTATCCTCTCGTGATACCCACTGCTGTGTCTCGTCT
CCTCATCAACAACAAACAACGGCAATTATCACCCATAAAATAAATTCCAT
GATGCAGGTTAGCTGGGATAACGAGTCTGCAAGGCGCCTCGGGGTCCTTC
CCGTACTGTCCCCGGCGTTTCTCTTTCGGGCCGAGTCGCCGGGTAACGGG
GCTCAGACGGCGGCGGTGTCGCCCCCCGCGGGGGAGATCGCGGCCGTTCT
CCACGCCGGGAGCACTCTCGACGTTAGCGTAAAGCTCGACGGAACGGTCC
GTGTTCCGGTCGGCCGCTGGTGAGTGTGTTTGTAGTTGAACCCGTGCTAT
CGTTTTTATCTACTTGTACGAAGTATTTATTTATCTTGCACGTTCAAGTA
GCAAATTTGTGAGCTACTTTTTTGCCTGTCTATAATGGGATCGATTCGAC
TTGAACGTCACGTGTGGTGCTGTTTAGTGTCAAGTACAGCAGCGCGTCCA
GTACTATCTATGATGCTCGCTTTTTTTTGTGTAAAGAAAAGAACGAGCTT
CTTTTCGTTTCTTGCCCATCAAGTGAGTTGATTTTTTTTTTTCTTGATAC
TGTATTCCGAGTGGAGTCCCTCAACATTTTTGCTAAATCCTTTAGGGAGT
TCCACTCCTTGTTGGACCCCCCCTCCCCCCCCCCCGCTGCCGCCTCCCGG
ACCCCCGACAATGATATCAAATCGTGACACGCCTGTACGCGCGTATCGGC
TACATCAATGCCGACGCAGGTGCGTTGGTGCTGTCTTGGTGACCGTGATC
GACCAGCACCACCAACAACCCGCCAGCGATGGCAACCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:481474..483113-

>mRNA_P-littoralis_Contig90.129.1 ID=mRNA_P-littoralis_Contig90.129.1|Name=mRNA_P-littoralis_Contig90.129.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig90:481474..483113- (Pylaiella littoralis U1_48)
GTAGCCGCCGGGGGTAGCAGCGCGTCCCCGGGGATGTTCTCACTGCATTC
GGTGTCCTCCCTGGATGTAATTGTAAAGGTTAGCTGGGATAACGAGTCTG
CAAGGCGCCTCGGGGTCCTTCCCGTACTGTCCCCGGCGTTTCTCTTTCGG
GCCGAGTCGCCGGGTAACGGGGCTCAGACGGCGGCGGTGTCGCCCCCCGC
GGGGGAGATCGCGGCCGTTCTCCACGCCGGGAGCACTCTCGACGTTAGCG
TAAAGCTCGACGGAACGGTCCGTGTTCCGGTCGGCCGCTGGTGCGTTGGT
GCTGTCTTGGTGACCGTGATCGACCAGCACCACCAACAACCCGCCAGCGA
TGGCAACCTG
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