mRNA_P-littoralis_Contig90.127.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.127.1
Unique NamemRNA_P-littoralis_Contig90.127.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.127.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 5.160e-54
Identity = 131/247 (53.04%), Postives = 155/247 (62.75%), Query Frame = 1 
Query:    1 LVVLADGTGTLPPASKKCLRFCVLFNGYQGVFQRDVTVENMSSGCRDRAGATEAEKLSHPVRLFVDDGAVLVSAGPRPETSSAAD---SAPSLSKPYLSPGSGV---DTTDTQAAVVVASGLKSPAQNGEA--QLLDETGRALPSLETLSMPFVVAVAPYRVYDASASVSTSAASAAEALVSDG-SFSLSPGFYGDEYRRHRDSLRP--EASRFCILPVVVRRDDAGG--TTTGCYDDLGEMHEIEE 702
            LVVLA GTGTLPPA+KK +RF VL NG+QGVFQRD+TVEN+SSG  D A   + +++SHPVRLFVDDG V+VS    P   +  +     PS++K  LS G         + QAAVV   G    + + EA   L DE+GRALPSLETL +P+ VAVAP R            A AA A+V+ G SFS SPG+ GDEY R R  L P  E SRF ILP+VV R DAGG        DDLGEMHEIEE
Sbjct: 2970 LVVLAAGTGTLPPATKKGVRFGVLLNGFQGVFQRDITVENISSGSLDGANRAKTDRVSHPVRLFVDDGGVVVSTNSPPSLEAPEEVIAPPPSVAKRRLSQGPSTIFEPLAEMQAAVVANCGGHGSSSSPEAAGHLTDESGRALPSLETLLLPYAVAVAPCR------------AEAATAVVAYGESFSSSPGYSGDEYGRQRGPLLPPEEVSRFRILPLVVPRKDAGGGXXXXXXLDDLGEMHEIEE 3204
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BLAST of mRNA_P-littoralis_Contig90.127.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 2.970e-46
Identity = 121/244 (49.59%), Postives = 143/244 (58.61%), Query Frame = 1 
Query:    1 LVVLADGTGTLPPASKKCLRFCVLFNGYQGVFQRDVTVENMSSGCRDRAGATEAEKLSHPVRLFVDDGAVLV----SAGPRPETSSAADSAPSLSKPYLSPGSGVDTTDTQAAVVVASGLKSPAQNGEAQLLDETGRALPSLETLSMPFVVAVAPYRVYDASASVSTSAASAAEALVSDG-SFSLSPGFYGDEYRRHRDSLRP--EASRFCILPVVVRRDDAGG---TTTGCYDDLGEMHEIEE 702
            LVVLA GTG L PA+KK +RF VL NG+QGVFQRD+TVEN+SS   D A     + ++HPVRLFVDDG VLV    S   +    + A   P+L+K  LS G    +T  +          S +Q     L DE GRALP L+TL +P+ VAVAP R            A AA A+ + G SFS SPG+ GDEY R R  L P  EASRF ILP+VV R DAGG         DDLGEMHEIEE
Sbjct: 1236 LVVLAAGTGMLQPATKKSVRFGVLLNGFQGVFQRDITVENISSRNLDGANPANTDTVTHPVRLFVDDGGVLVNTNSSTSLKAPEEAVAPPPPALAKHRLSQG---PSTIFEPLANCGGHGSSSSQEAAGHLTDEGGRALPFLDTLLLPYAVAVAPCR------------AEAATAVPAYGESFSSSPGYSGDEYGRQRGPLLPPEEASRFRILPLVVPRKDAGGGXXXXXXXLDDLGEMHEIEE 1464
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHH6_ECTSI5.160e-5453.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ8_9PHAE2.970e-4649.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:477027..477801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHH6
Model size775
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.46e-55
EggNOG OGs28MMI@1|root,2QU5A@2759|Eukaryota
Cds size774
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791807.2745686-CDS-P-littoralis_Contig90:477027..4778011680791807.2745686-CDS-P-littoralis_Contig90:477027..477801Pylaiella littoralis U1_48CDSP-littoralis_Contig90 477028..477801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.127.1prot_P-littoralis_Contig90.127.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 477028..477801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.127.1

>prot_P-littoralis_Contig90.127.1 ID=prot_P-littoralis_Contig90.127.1|Name=mRNA_P-littoralis_Contig90.127.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=258bp
LVVLADGTGTLPPASKKCLRFCVLFNGYQGVFQRDVTVENMSSGCRDRAG
ATEAEKLSHPVRLFVDDGAVLVSAGPRPETSSAADSAPSLSKPYLSPGSG
VDTTDTQAAVVVASGLKSPAQNGEAQLLDETGRALPSLETLSMPFVVAVA
PYRVYDASASVSTSAASAAEALVSDGSFSLSPGFYGDEYRRHRDSLRPEA
SRFCILPVVVRRDDAGGTTTGCYDDLGEMHEIEEQQDDDAESLDEDEDNG
DHGEESKD
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mRNA from alignment at P-littoralis_Contig90:477027..477801-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.127.1 ID=mRNA_P-littoralis_Contig90.127.1|Name=mRNA_P-littoralis_Contig90.127.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=775bp|location=Sequence derived from alignment at P-littoralis_Contig90:477027..477801- (Pylaiella littoralis U1_48)
CTCGTGGTGCTTGCCGACGGGACGGGCACGTTGCCACCGGCGAGCAAAAA
GTGCCTTCGGTTTTGTGTTCTCTTTAACGGGTACCAGGGGGTGTTCCAGC
GGGACGTTACCGTGGAGAACATGTCGTCCGGGTGTAGGGACCGAGCCGGT
GCCACAGAGGCGGAGAAGCTGTCGCACCCCGTCCGGCTGTTTGTTGACGA
TGGGGCCGTTTTGGTCAGCGCGGGGCCGCGGCCAGAAACTTCCTCTGCAG
CTGACTCAGCACCGTCACTTTCGAAGCCCTACCTCTCGCCAGGATCGGGC
GTCGACACGACCGACACCCAAGCCGCTGTTGTTGTTGCCTCTGGGCTTAA
GTCGCCGGCGCAGAACGGCGAGGCACAGCTGTTGGACGAGACGGGTCGCG
CGTTGCCGTCTCTAGAGACTCTTTCTATGCCGTTTGTGGTGGCCGTTGCT
CCGTACCGTGTGTATGATGCGTCAGCGTCGGTGTCGACGTCAGCGGCATC
AGCGGCAGAGGCGCTCGTATCCGACGGAAGTTTTTCCCTGTCTCCCGGTT
TTTATGGAGACGAATACCGACGACACCGGGACTCCTTGCGTCCGGAGGCT
AGCAGGTTCTGCATTCTTCCCGTCGTGGTTCGACGGGACGATGCCGGCGG
CACCACCACTGGCTGCTACGACGATCTCGGCGAGATGCACGAGATCGAGG
AACAGCAGGACGACGACGCGGAAAGTCTCGACGAAGATGAAGACAATGGC
GACCATGGCGAGGAATCGAAGGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:477027..477801-

>mRNA_P-littoralis_Contig90.127.1 ID=mRNA_P-littoralis_Contig90.127.1|Name=mRNA_P-littoralis_Contig90.127.1|organism=Pylaiella littoralis U1_48|type=CDS|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig90:477027..477801- (Pylaiella littoralis U1_48)
CTCGTGGTGCTTGCCGACGGGACGGGCACGTTGCCACCGGCGAGCAAAAA
GTGCCTTCGGTTTTGTGTTCTCTTTAACGGGTACCAGGGGGTGTTCCAGC
GGGACGTTACCGTGGAGAACATGTCGTCCGGGTGTAGGGACCGAGCCGGT
GCCACAGAGGCGGAGAAGCTGTCGCACCCCGTCCGGCTGTTTGTTGACGA
TGGGGCCGTTTTGGTCAGCGCGGGGCCGCGGCCAGAAACTTCCTCTGCAG
CTGACTCAGCACCGTCACTTTCGAAGCCCTACCTCTCGCCAGGATCGGGC
GTCGACACGACCGACACCCAAGCCGCTGTTGTTGTTGCCTCTGGGCTTAA
GTCGCCGGCGCAGAACGGCGAGGCACAGCTGTTGGACGAGACGGGTCGCG
CGTTGCCGTCTCTAGAGACTCTTTCTATGCCGTTTGTGGTGGCCGTTGCT
CCGTACCGTGTGTATGATGCGTCAGCGTCGGTGTCGACGTCAGCGGCATC
AGCGGCAGAGGCGCTCGTATCCGACGGAAGTTTTTCCCTGTCTCCCGGTT
TTTATGGAGACGAATACCGACGACACCGGGACTCCTTGCGTCCGGAGGCT
AGCAGGTTCTGCATTCTTCCCGTCGTGGTTCGACGGGACGATGCCGGCGG
CACCACCACTGGCTGCTACGACGATCTCGGCGAGATGCACGAGATCGAGG
AACAGCAGGACGACGACGCGGAAAGTCTCGACGAAGATGAAGACAATGGC
GACCATGGCGAGGAATCGAAGGAC
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