mRNA_P-littoralis_Contig90.124.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.124.1
Unique NamemRNA_P-littoralis_Contig90.124.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.124.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 3.920e-99
Identity = 302/543 (55.62%), Postives = 333/543 (61.33%), Query Frame = 1 
Query:    1 LALPGARLPPELLPPPEPALLEXXXXXXXXXXXXXXGMSREPSVDWGQHIRLTGTVRVEVALEDRAGDPDLMGLATAGGGAAPGGQDEGVLVESVALVGSLVPGPTFGLSCSSVTVVLRPXXXXXXXXXXHGDETHPYDPEGPASFFVESFSQSLGPVRLKLAGGGRLFLDRGVRVPAADDEGGGRRQPARVARLVTAIAEPSRGIVSANRRREVAVRLIAA------EQGEGCAGAAGYDDEEDGLSDGIREDQCDLFVSIMDADHPGYPPQVVSVLVDVPAAAMVVPDPEDGEVGRVSPGEDGSV--DVLTGG--AGR----WSSNGNATDASARTEAEEARGSARSRSEMAQVGDTAATAKS-----------------------------STVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAAGPLKLGASASDFEGSGTGAA----------LPLLEMRGCTPIGNKSSRFEINLGQQLAHLSSLEWQVSLMWPAARRVRRAS 1470
            LALPGARLPPEL+PPP P L E                    + DWGQH+RL GTVRVE+ALED     D +     GGG    GQ+EGVLVESVALVGSLVPGPTFGLS +SVTV LRP     XXXXX GD  +PYDPEGPA+FF+ESFSQS+ PV LKL GGGRLFL RGVRVPAA+D       PARV R VTAIAEPS  IVSA +RREVAVRLIAA      +QG+GC G A   +EE     G  ED+CDLFVSI DADHPGYPPQVVSV V+VPA  + +   + G  G + PG  G V  D L GG  A R     S+ G   DA  R   +E+R SAR+R   +   D A                                    V               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   GPL LG S +    + T             LPLLE+RGCTPIG KSSRFEINLGQQLAH SSLEW VSLMWPA  R+RR S
Sbjct: 2111 LALPGARLPPELIPPPGPNLAEEGGGTEATM------FGAPGTADWGQHMRLMGTVRVEIALEDL----DDVVPGAGGGGDGGSGQEEGVLVESVALVGSLVPGPTFGLSHTSVTVELRPPDSGGXXXXXDGDVKYPYDPEGPATFFLESFSQSMRPVNLKLEGGGRLFLARGVRVPAAEDGXXXXXXPARVVRAVTAIAEPSSLIVSATKRREVAVRLIAAAEELEEKQGKGCGGRARRAEEE-----GEEEDRCDLFVSITDADHPGYPPQVVSVQVEVPADVVDLESEDMG--GIILPGMAGPVVEDALAGGERASRASYGLSNGGEGADALGRMSPDESRKSARARGGASLAVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVPLPRKRSGFLSPPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLALGTSPAAAGNAFTRGXXXXXXXXXXPLPLLEVRGCTPIGPKSSRFEINLGQQLAHPSSLEWPVSLMWPAVHRLRRGS 2636
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BLAST of mRNA_P-littoralis_Contig90.124.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 3.020e-71
Identity = 187/358 (52.23%), Postives = 209/358 (58.38%), Query Frame = 1 
Query:    1 LALPGARLPPELLPPPEPALLEXXXXXXXXXXXXXXGMSREPSV-DWGQHIRLTGTVRVEVALEDRAGDPDLMGLATAGGGAAPG------------GQDEGVLVESVALVGSLVPGPTFGLSCSSVTVVLRPXXXXXXXXXXHGDETHPYDPEGPASFFVESFSQSLGPVRLKLAGGGRLFLDRGVRVPAADDEGGGRRQPARVARLVTAIAEPSR-GIVSANRRREVAVRLIAAEQGEGCAGAAGYDDEEDGLSDGIREDQCDLFVSIMDADHPGYPPQVVSVLVDVPAAAMVVPDPEDGEVGRVSPGEDGSV--DVLTGG--AGRWS----SNGNATDASARTEAEEARGSARSR 1008
            LALPGARLPPEL+PPPEP L E               M   P+  DWGQH+RL GTVRVE+ALEDRAGDPD + L     GA               GQ+EGVLVESVALVGSLVPGPTFGLS +SVTV LRP     XXXXX GD  +PYDPEGPA+FF+ESFSQSL PVRLKL GGGRLFL RGVRVPAA+D        ARVAR VTAIAEPS                                            ED+CDLFV I DADHPGYPPQVVSV V+VPA  + +   + G  G + PG  G V  D L GG  A R S    + G   DA  R  ++E+R SAR+R
Sbjct: 3846 LALPGARLPPELIPPPEPNLAEEGGGTEA-------AMFGVPATSDWGQHMRLVGTVRVEIALEDRAGDPDQLDLDDVAPGAGXXXXXXXXXXXXXXGQEEGVLVESVALVGSLVPGPTFGLSHTSVTVELRPPDSGGXXXXXDGDVKYPYDPEGPATFFLESFSQSLRPVRLKLEGGGRLFLARGVRVPAAEDGXXXXXXXARVARAVTAIAEPSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEDRCDLFVRITDADHPGYPPQVVSVQVEVPADVVDLESEDMG--GIILPGMAGPVVEDALAGGERASRGSYGLSNGGEGADALGRMSSDESRKSARAR 4194
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWQ8_9PHAE3.920e-9955.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH6_ECTSI3.020e-7152.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:472825..475035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHH6
Model size1588
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.95e-72
EggNOG OGs28MMI@1|root,2QU5A@2759|Eukaryota
Cds size1584
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791807.1593323-CDS-P-littoralis_Contig90:472826..4734031680791807.1593323-CDS-P-littoralis_Contig90:472826..473403Pylaiella littoralis U1_48CDSP-littoralis_Contig90 472827..473403 -
1680791807.1790822-CDS-P-littoralis_Contig90:474028..4750351680791807.1790822-CDS-P-littoralis_Contig90:474028..475035Pylaiella littoralis U1_48CDSP-littoralis_Contig90 474029..475035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.124.1prot_P-littoralis_Contig90.124.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 472827..475035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.124.1

>prot_P-littoralis_Contig90.124.1 ID=prot_P-littoralis_Contig90.124.1|Name=mRNA_P-littoralis_Contig90.124.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=528bp
LALPGARLPPELLPPPEPALLEGGTAAEVAVAAGGGGMSREPSVDWGQHI
RLTGTVRVEVALEDRAGDPDLMGLATAGGGAAPGGQDEGVLVESVALVGS
LVPGPTFGLSCSSVTVVLRPPESGGGGGGGHGDETHPYDPEGPASFFVES
FSQSLGPVRLKLAGGGRLFLDRGVRVPAADDEGGGRRQPARVARLVTAIA
EPSRGIVSANRRREVAVRLIAAEQGEGCAGAAGYDDEEDGLSDGIREDQC
DLFVSIMDADHPGYPPQVVSVLVDVPAAAMVVPDPEDGEVGRVSPGEDGS
VDVLTGGAGRWSSNGNATDASARTEAEEARGSARSRSEMAQVGDTAATAK
SSTVEGGGGGGGGAAGGGASRTDKFLSKKSSGFFPPLSGAAAAAAEPTGA
SSSSSSSAIAAATAAAIAAGPLKLGASASDFEGSGTGAALPLLEMRGCTP
IGNKSSRFEINLGQQLAHLSSLEWQVSLMWPAARRVRRASHSPSLLGAAG
DGAGVGGISSGSSSGGGGGGGGGSSSNS
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mRNA from alignment at P-littoralis_Contig90:472825..475035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.124.1 ID=mRNA_P-littoralis_Contig90.124.1|Name=mRNA_P-littoralis_Contig90.124.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2211bp|location=Sequence derived from alignment at P-littoralis_Contig90:472825..475035- (Pylaiella littoralis U1_48)
TTGGCCTTGCCGGGCGCTCGCCTGCCGCCGGAGCTGCTTCCGCCCCCCGA
GCCCGCTCTCCTAGAAGGAGGCACTGCAGCGGAGGTGGCGGTGGCCGCGG
GAGGAGGAGGAATGTCGAGGGAGCCGAGTGTCGACTGGGGGCAGCACATC
CGGCTGACGGGGACGGTGCGCGTGGAGGTCGCTCTCGAGGACAGGGCCGG
CGATCCGGATCTGATGGGCTTGGCCACCGCCGGCGGAGGGGCAGCCCCCG
GAGGACAAGACGAAGGGGTCTTGGTCGAATCCGTTGCTTTGGTGGGGTCC
CTCGTTCCCGGACCCACATTCGGGCTCTCGTGTAGCTCGGTTACCGTGGT
GCTTCGACCCCCCGAGAGCGGCGGCGGCGGCGGGGGCGGGCACGGCGATG
AGACGCACCCCTACGACCCGGAGGGTCCCGCGTCCTTCTTCGTGGAGAGT
TTCTCGCAGTCTCTGGGCCCCGTCCGCCTGAAGCTGGCGGGCGGCGGGCG
GCTCTTCCTAGACAGGGGCGTGCGCGTGCCTGCTGCGGACGATGAGGGCG
GGGGGCGGCGGCAACCGGCGCGGGTGGCGAGGCTAGTGACCGCCATCGCC
GAGCCTTCCCGCGGGATAGTCTCGGCGAACAGGAGGAGGGAGGTCGCCGT
GAGGCTCATCGCTGCGGAGCAAGGGGAGGGGTGTGCCGGTGCTGCCGGCT
ATGATGACGAAGAGGACGGTTTGAGCGACGGGATCCGCGAAGATCAGTGC
GACCTGTTTGTGAGCATCATGGACGCCGACCACCCGGGATACCCTCCGCA
GGTGGTTTCGGTGCTTGTGGATGTTCCCGCTGCCGCGATGGTGGTTCCAG
ATCCTGAGGACGGCGAGGTTGGGAGGGTTTCCCCCGGGGAAGACGGGTCC
GTCGACGTGCTCACCGGCGGAGCGGGCCGCTGGTCGTCAAACGGGAACGC
CACCGATGCTTCGGCACGAACCGAAGCAGAGGAGGCGCGGGGATCGGCGA
GATCGAGGTGAGCCTACGCCAATATGACGCAGGAGTCTAGTGCGCGCACA
TGTATGGCACTTTGCCGGTTGTTTCCAAGTACGCCAGTAAGCTTTTTTAC
CTGGTCCGTCTGTCAGTCGGTCAGCACAGGATCGCATGAACGTGAGGTAA
GCTGGAGTGGCACGCTAGCCGCCGGTAGGCATGATTGCCCTCAAGTGTAT
TTTTTCGTTGTGGACCAGGGTGTAGGATCTTGTGACTTTTTTCTCGCAGG
GGCGTTTGCACGCGCCCTCGTTGAGCAACATCCTAGTAAGCTTGACTCTT
GAATTTTCGCCGCTGCCCAGAGGCGTTTTTGATCTCATTCCAACCGGAAC
AAAGTGGGCAAAACGGCCAGTGAGGAAATTTCGTGGATAACAGGTTTGTG
CATCTTCAATTGACGTTCGCTTCTTCTTTCTTTCTTCGTGTTTTGAGACT
CGTCGGCTGCAGCGGTGCAGTTTGGCAGTGAAGCCGACGCTATCATAGCC
TTCGAGGAGCTTCCTGTGATGCAAGCACGGATCACAAACATTTACCCTCG
TGCGTGCCGCCACTGACCTGCGCCGATTCGCGCTCACATTCCTTCCCCGC
TGCCATGAAACAACGTTCCACTATTCAACAAGGAGCGAGATGGCCCAGGT
AGGGGACACTGCCGCGACCGCAAAATCGTCCACAGTAGAGGGCGGCGGCG
GCGGTGGCGGTGGCGCGGCAGGGGGCGGCGCGTCTAGAACAGACAAGTTT
CTGTCCAAGAAGAGCTCAGGTTTTTTTCCGCCGTTGTCTGGAGCAGCAGC
GGCGGCGGCAGAACCAACGGGGGCGTCGTCGTCCTCATCCTCCTCGGCAA
TCGCGGCCGCGACGGCGGCGGCGATTGCGGCCGGGCCTCTCAAGCTGGGA
GCCTCGGCGAGTGACTTTGAAGGGAGCGGGACGGGCGCGGCCTTGCCGCT
CCTGGAGATGCGCGGGTGTACCCCCATCGGCAACAAGTCGTCCAGGTTCG
AGATCAACCTCGGCCAGCAGCTGGCGCACCTGTCCTCTCTGGAGTGGCAG
GTGTCCCTGATGTGGCCAGCCGCCCGGCGTGTGCGCAGGGCGAGCCACTC
GCCGTCGTTGCTGGGCGCCGCCGGGGATGGCGCCGGCGTCGGAGGCATCA
GTAGCGGCAGCAGCAGCGGCGGCGGCGGTGGCGGTGGCGGCGGCAGCAGC
AGCAACAGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:472825..475035-

>mRNA_P-littoralis_Contig90.124.1 ID=mRNA_P-littoralis_Contig90.124.1|Name=mRNA_P-littoralis_Contig90.124.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1584bp|location=Sequence derived from alignment at P-littoralis_Contig90:472825..475035- (Pylaiella littoralis U1_48)
TTGGCCTTGCCGGGCGCTCGCCTGCCGCCGGAGCTGCTTCCGCCCCCCGA
GCCCGCTCTCCTAGAAGGAGGCACTGCAGCGGAGGTGGCGGTGGCCGCGG
GAGGAGGAGGAATGTCGAGGGAGCCGAGTGTCGACTGGGGGCAGCACATC
CGGCTGACGGGGACGGTGCGCGTGGAGGTCGCTCTCGAGGACAGGGCCGG
CGATCCGGATCTGATGGGCTTGGCCACCGCCGGCGGAGGGGCAGCCCCCG
GAGGACAAGACGAAGGGGTCTTGGTCGAATCCGTTGCTTTGGTGGGGTCC
CTCGTTCCCGGACCCACATTCGGGCTCTCGTGTAGCTCGGTTACCGTGGT
GCTTCGACCCCCCGAGAGCGGCGGCGGCGGCGGGGGCGGGCACGGCGATG
AGACGCACCCCTACGACCCGGAGGGTCCCGCGTCCTTCTTCGTGGAGAGT
TTCTCGCAGTCTCTGGGCCCCGTCCGCCTGAAGCTGGCGGGCGGCGGGCG
GCTCTTCCTAGACAGGGGCGTGCGCGTGCCTGCTGCGGACGATGAGGGCG
GGGGGCGGCGGCAACCGGCGCGGGTGGCGAGGCTAGTGACCGCCATCGCC
GAGCCTTCCCGCGGGATAGTCTCGGCGAACAGGAGGAGGGAGGTCGCCGT
GAGGCTCATCGCTGCGGAGCAAGGGGAGGGGTGTGCCGGTGCTGCCGGCT
ATGATGACGAAGAGGACGGTTTGAGCGACGGGATCCGCGAAGATCAGTGC
GACCTGTTTGTGAGCATCATGGACGCCGACCACCCGGGATACCCTCCGCA
GGTGGTTTCGGTGCTTGTGGATGTTCCCGCTGCCGCGATGGTGGTTCCAG
ATCCTGAGGACGGCGAGGTTGGGAGGGTTTCCCCCGGGGAAGACGGGTCC
GTCGACGTGCTCACCGGCGGAGCGGGCCGCTGGTCGTCAAACGGGAACGC
CACCGATGCTTCGGCACGAACCGAAGCAGAGGAGGCGCGGGGATCGGCGA
GATCGAGGAGCGAGATGGCCCAGGTAGGGGACACTGCCGCGACCGCAAAA
TCGTCCACAGTAGAGGGCGGCGGCGGCGGTGGCGGTGGCGCGGCAGGGGG
CGGCGCGTCTAGAACAGACAAGTTTCTGTCCAAGAAGAGCTCAGGTTTTT
TTCCGCCGTTGTCTGGAGCAGCAGCGGCGGCGGCAGAACCAACGGGGGCG
TCGTCGTCCTCATCCTCCTCGGCAATCGCGGCCGCGACGGCGGCGGCGAT
TGCGGCCGGGCCTCTCAAGCTGGGAGCCTCGGCGAGTGACTTTGAAGGGA
GCGGGACGGGCGCGGCCTTGCCGCTCCTGGAGATGCGCGGGTGTACCCCC
ATCGGCAACAAGTCGTCCAGGTTCGAGATCAACCTCGGCCAGCAGCTGGC
GCACCTGTCCTCTCTGGAGTGGCAGGTGTCCCTGATGTGGCCAGCCGCCC
GGCGTGTGCGCAGGGCGAGCCACTCGCCGTCGTTGCTGGGCGCCGCCGGG
GATGGCGCCGGCGTCGGAGGCATCAGTAGCGGCAGCAGCAGCGGCGGCGG
CGGTGGCGGTGGCGGCGGCAGCAGCAGCAACAGT
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