mRNA_P-littoralis_Contig90.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.105.1
Unique NamemRNA_P-littoralis_Contig90.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.105.1 vs. uniprot
Match: A0A6H5L347_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L347_9PHAE)

HSP 1 Score: 496 bits (1276), Expect = 3.260e-162
Identity = 308/521 (59.12%), Postives = 366/521 (70.25%), Query Frame = 3 
Query:   45 ASVASSMSRTSPSTLRELLESVPQILDAQTPGALDLESCASTDAMEAMARAEERLLKSADTFFPPLFKVSILNNLGRNDPFAEPDDEDFPDQAPVEDLNAERRRLDEITGRVVSEQSHLNSFAERVQELAAHLQGRLEELPLRAQAVSKFSSFAPASGASGSAGLSVLDMVYGGAGDDEKAREAEHLENEKSLRRVEEELAAAAAEAEKVSLLETETAMRADIAQQQREVELLEKEERAAAAALAVESPGSGLGSDA----GRRAEASRETENLVGVTGMSESQLEACVREEEALVERNANIRDWYAATVASVELLGGVRLSHRLLFGGA--GEVEGMEFMVDLGAGQIMEVTVSAADGRLSSVQLCHSQSTAAAAADAGAPEARGREGGGVSLWELEELRCTADTLPTPQNLRTLVREALGRARRAVVREEHVRLMRRKYLTSYRPPTRELTVTMPAGVVACVRLHVDYPKVAGGAELVKLTGVGGWSAEETEEMCRQVNHLALSTLADTMDALEAAMAA 1589
            A+V S+   T P++LRELLE VPQ+L+AQ+PGAL ++S AS DAME+++RAE RLLKSA+TF P  F VS+L NLGR DPF EP DEDFPDQA  +DL AERRR+DEIT R +SEQ  L S AERV+E A HLQ R++ L L+ +A        PA  +SG A LS++D VY  AGDD        + NE++L R E+  A  A EA++  L E   A+RA++  QQREV+LLE+E+ A A A A E+  +G G  A    G RAEASRE ENLVGV GM E++LEAC REE+ALV RN  IRDWYAATVA VE LGGVRLSHRLLFG    G VEGMEFMV LG+G  MEVTVSA DG+LSS QLCH Q    AA  AG           +S  ELEE+R  AD LP PQNL  LV EAL RA  A VREEHVR +RR+YLT YR P+RE+TVTM AG+VAC  L  DYPKV GGAE+V LTGVGGWSA ET+++CR+VN +AL TL  TMD LEA + A
Sbjct:    3 ATVDSASRPTVPTSLRELLERVPQVLNAQSPGALHMQSRASADAMESVSRAEARLLKSAETFHPHTFSVSVLENLGRRDPFIEPGDEDFPDQAADDDLEAERRRVDEITDRALSEQQPLRSSAERVEEQAMHLQERIKGLTLQVEAD-------PALRSSGGARLSIMDKVY--AGDDRADEREADIRNEETLLR-EDSQALGAVEAKRTVLAERAAAVRAELLLQQREVDLLEREQHAVALA-AAETAATGAGGAAAGSNGWRAEASREMENLVGVAGMPEARLEACEREEDALVRRNTGIRDWYAATVAEVENLGGVRLSHRLLFGAGAGGRVEGMEFMVGLGSGLTMEVTVSAVDGKLSSAQLCHGQGGGGAAGFAG-----------ISPSELEEMRRAADALPAPQNLGKLVIEALSRATCAAVREEHVRQVRRRYLTGYRSPSREVTVTMGAGIVACFHLAADYPKVVGGAEVVALTGVGGWSAHETKQLCRRVNDMALPTLMATMDVLEAEVEA 501
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L347_9PHAE3.260e-16259.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:440819..445963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3026
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004100.1
Cds size1554
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.105.1prot_P-littoralis_Contig90.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 440860..444532 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791806.8707275-UTR-P-littoralis_Contig90:440818..4408591680791806.8707275-UTR-P-littoralis_Contig90:440818..440859Pylaiella littoralis U1_48UTRP-littoralis_Contig90 440819..440859 +
1680791806.9365854-UTR-P-littoralis_Contig90:444532..4459631680791806.9365854-UTR-P-littoralis_Contig90:444532..445963Pylaiella littoralis U1_48UTRP-littoralis_Contig90 444533..445963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791806.8850188-CDS-P-littoralis_Contig90:440859..4409241680791806.8850188-CDS-P-littoralis_Contig90:440859..440924Pylaiella littoralis U1_48CDSP-littoralis_Contig90 440860..440924 +
1680791806.899028-CDS-P-littoralis_Contig90:441324..4415211680791806.899028-CDS-P-littoralis_Contig90:441324..441521Pylaiella littoralis U1_48CDSP-littoralis_Contig90 441325..441521 +
1680791806.9161086-CDS-P-littoralis_Contig90:442287..4434261680791806.9161086-CDS-P-littoralis_Contig90:442287..443426Pylaiella littoralis U1_48CDSP-littoralis_Contig90 442288..443426 +
1680791806.9268265-CDS-P-littoralis_Contig90:444379..4445321680791806.9268265-CDS-P-littoralis_Contig90:444379..444532Pylaiella littoralis U1_48CDSP-littoralis_Contig90 444380..444532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.105.1

>prot_P-littoralis_Contig90.105.1 ID=prot_P-littoralis_Contig90.105.1|Name=mRNA_P-littoralis_Contig90.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=518bp
MASVASSMSRTSPSTLRELLESVPQILDAQTPGALDLESCASTDAMEAMA
RAEERLLKSADTFFPPLFKVSILNNLGRNDPFAEPDDEDFPDQAPVEDLN
AERRRLDEITGRVVSEQSHLNSFAERVQELAAHLQGRLEELPLRAQAVSK
FSSFAPASGASGSAGLSVLDMVYGGAGDDEKAREAEHLENEKSLRRVEEE
LAAAAAEAEKVSLLETETAMRADIAQQQREVELLEKEERAAAAALAVESP
GSGLGSDAGRRAEASRETENLVGVTGMSESQLEACVREEEALVERNANIR
DWYAATVASVELLGGVRLSHRLLFGGAGEVEGMEFMVDLGAGQIMEVTVS
AADGRLSSVQLCHSQSTAAAAADAGAPEARGREGGGVSLWELEELRCTAD
TLPTPQNLRTLVREALGRARRAVVREEHVRLMRRKYLTSYRPPTRELTVT
MPAGVVACVRLHVDYPKVAGGAELVKLTGVGGWSAEETEEMCRQVNHLAL
STLADTMDALEAAMAAC*
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mRNA from alignment at P-littoralis_Contig90:440819..445963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.105.1 ID=mRNA_P-littoralis_Contig90.105.1|Name=mRNA_P-littoralis_Contig90.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5145bp|location=Sequence derived from alignment at P-littoralis_Contig90:440819..445963+ (Pylaiella littoralis U1_48)
CTTGCTGCTTTCACCCTCAACACCACGAGACGGCCGTTGCCATGGCGAGT
GTGGCAAGTTCGATGTCCCGAACTTCACCGAGTACACTACGGGAGCTGTT
AGAGAGGTGAGGAATAGGTTTCCTTCTTCGTGTAGTATCGTACGGTACAC
GGTACGAAAGCGTTCTCCTCTCTCCAGCCCATTACTGCTTCACGTGCTTC
GTACACACATGCCGCACCCCCCATCTCTGCTGTGTGCCTCCCAGCTTGCT
TGTCACACCGATGATCACATCTTTAATAGCCTCCGCGATCACATTCGAAA
TTCAAAACATGTCCTGTCTTATGTCTTTCTTACACAGGAGAGTACTGCTG
TAGTACCCGACCCTTACAGTAGTACTCTCGTGTACATTCGTATCGCTGTG
GGACACACGAATGCCCAATTCAAGTAACACCGCCAACGTTCCGTTGCTCT
TTTGCGCCGCCCGATGCTCTTCACCTCTCTCCTACTCGGTATATTCAATT
CCTTAGTGTCCCCCAGATACTCGACGCACAGACGCCTGGCGCGCTGGACC
TTGAATCATGCGCCAGCACGGACGCTATGGAGGCCATGGCTCGTGCCGAG
GAACGCTTGCTCAAATCCGCGGACACGTTCTTTCCGCCGCTCTTCAAAGT
GTCGATCTTGAACAATCTGGGGCGTAATGATCCTTTCGCGGAGCCTGATG
ATGGTGAGTGCTTGCTTGCTCTTTGCACGGGTACAGCAGCAGCAGCAGCA
GCAGCAGAAGCAGCCGGAATTACAACTACAGCGTGCCAACACTCTGCTGT
AGTACAGCCGGTAGACAGCATCGTCGTACCGCTGTACCTGTACTAGACCG
CTGTTAGCGTACTGCTGTACTGCTGTATGTCATGCCTACGCTTTTACAGG
TTTTTCCAGTGTGCCAGTGCTCCTCTGTTTCAGGGAGCTTGGCTTCGCAC
GTGTAGATCACTGCTTTCCCTTTTGCATCAGACTCGTTTAACGGGTTTTA
CATCGCGATATCAGTGTGGCATACCTATCCTGCGGTACGGTGTTGGGTGC
TTCTCTCCACCTGGTGCGAAAACTCGGCCAAGAGCGACGTCACACACACG
GCAGCCCCGGGCCCTGGTACAAGAAGCCGAAACGTGGATGAGAGGCTCGC
TTTTTTTTTTGTACGATAGCGCAAAGGTCAAGCAACGCTTACCGCTGTAA
GTAACACTGCTGTCAGTGAGTTGTGTGGCATTCACGGCTAAGGTTGCAGC
AACAGTGCGGACCCCCGTTGACTCTGTATGTTCCGGTATGTCCACCGCTG
CGACACGATCGATCAACTTACCGGTTTCCGCAGCAGTGAGATTACATCTA
CCCTCCGTGCCCCTCGTTCCATCACTCAATTTGTAATAGCAGCAGCACCA
GCTCCTGTGAATCTCTACTTCTATATCTTGTGACGGGCACTTTTTTGTGT
TTTATTTCATCATACACAGAGGATTTCCCAGACCAAGCCCCGGTCGAGGA
TCTCAACGCAGAACGGCGGCGATTGGACGAGATCACGGGCCGCGTCGTTT
CCGAACAGTCCCACCTAAATTCCTTCGCCGAGAGGGTCCAGGAGCTTGCC
GCACACCTTCAAGGGCGGTTAGAAGAGCTGCCACTGCGGGCGCAGGCAGT
CTCGAAATTCTCCTCCTTCGCGCCCGCCTCCGGTGCGAGCGGTAGCGCGG
GACTGTCAGTTCTGGACATGGTGTACGGCGGGGCCGGCGACGACGAGAAG
GCTCGCGAAGCTGAACACCTCGAGAACGAGAAATCTTTGAGGCGGGTTGA
GGAAGAACTGGCCGCCGCCGCCGCCGAGGCGGAGAAGGTATCGCTGTTGG
AGACAGAGACTGCCATGCGAGCGGATATCGCCCAGCAGCAGCGAGAGGTA
GAACTCCTCGAGAAGGAAGAGCGGGCCGCTGCTGCGGCCCTAGCTGTGGA
GAGTCCGGGGTCGGGGTTGGGGTCGGATGCCGGGCGGAGGGCGGAGGCGT
CCAGGGAGACAGAGAACCTTGTCGGGGTGACGGGCATGTCGGAGTCCCAG
CTGGAGGCCTGCGTCCGAGAGGAGGAAGCTCTCGTGGAGAGGAACGCTAA
CATTCGGGACTGGTACGCAGCCACAGTCGCCAGCGTGGAGCTCCTGGGAG
GCGTTCGCTTATCTCACCGGCTTCTTTTCGGCGGCGCCGGCGAAGTGGAG
GGGATGGAATTCATGGTGGACCTCGGAGCCGGCCAGATTATGGAGGTCAC
CGTGTCTGCGGCGGACGGGAGATTGAGCTCCGTGCAGCTCTGCCACAGCC
AGAGTACAGCAGCAGCAGCAGCAGATGCGGGAGCGCCGGAGGCGAGAGGG
AGGGAAGGGGGGGGCGTTTCGCTGTGGGAGCTGGAGGAGCTTAGGTGCAC
CGCGGATACGCTCCCCACCCCGCAAAACTTGAGGACGCTCGTACGCGAGG
CTTTGGGTCGTGCGAGGCGCGCCGTGGTGAGAGAAGAGCACGTGCGGCTG
ATGCGACGCAAGTACCTGACGAGCTACAGGCCTCCCACGCGCGAGCTGAC
GGTTACGATGCCTGCCGGGGTGGTGGCCTGTGTCCGCCTGCACGTGGACT
ACCCAAAGGTGGGTCGAGCGGGCGAGCCGAGCTGAGTCAAGCTGTTTTTG
TGTGTGTTTTATTTTTTGTTTTTGATGGGTTATCTACTCGCCGTGTGATT
TTGCTGCCGGTCGTTGCATAAGTTGGGTAAAGCTCCGGAGTACATCAGGA
ATATTTTCCACTGAATCCACCTTCGGAGTACGTTTACTGTATGCTTGCCG
ACCCTACTATGCTAAAAGCTACGGTACGTTACGATTCCGCCCGACGAGCG
AAGCGTTGATCAGATGAAAGTCAACTTGTTCCGGGATATGGCTCCCACTG
CTTTTCCTAAGTATTTTTCTTGGCTTTTCTTTTCTTTTCCCGCGCCATTC
GCCTCGAACCCCTTTTATAAAGTTAAGACTAAACACTCGGCGAGGTTGCA
CAGCTATTATTGCACACCGACAACGATGATCCGGTGTAGGTGACAAAAAT
TCAAACCGCCAGTTCGTGAACAATAATGACGTCAGCCGCGCTTGAGTTGA
TTGTCTCAGCTTATCTTCATCCTTTCCATTTCTTCATGTCCATAGATTAG
GCTCCGTCCTGCGTCCATTTTGTGGCCCCTTCAGGACCAGCCGATTGCTT
GCTCCCGGCGCCATTTCGACCCCGTCGCCCAGACCCCGAGCAGAACCACG
AGGATTTAGCTTTTGTCGATATTTTGCGTTCTTCCCGTGTTCCGCGAACG
AAAAAATACACTCCGAATGAGGCGTGCGTGGGAATTCATAGCGATTTTCG
CGTGAAGATAAAATCAACATCAACGACAACGACAACGACAATCGAGACAA
ACAAGGACAGCTTAGTGCGGCAAAGACAACAAATGGCGAACAACAGCAAC
AAGTCAGTGATTTATCTGCACGAGAATATCTTACAGCAGAACTCCCCATC
TGTTCGTGGTGGCACTTTTGCGCATGTGCTCTGAACAAACGAATAAAAAA
ATGTGTGACAGGTTGCGGGCGGAGCAGAACTAGTCAAGCTTACCGGGGTC
GGCGGCTGGAGCGCGGAGGAAACAGAAGAGATGTGCCGCCAGGTCAACCA
CTTGGCGCTCTCAACGCTCGCGGATACCATGGATGCGCTTGAAGCTGCAA
TGGCCGCGTGTTGAAGTTAGGTTGTAGAACGTGTGACGGCGGGTGTGTGG
GAGGGGAGGCTTGGAGCAGCAGTTAGTGGCCTTCCTGGAACCAAAGCAGG
GTTGAACGACCTGACGATGTAAATTCATGCCAGGCAAATTGACCGTTCGA
GGCATTCGGGGGCGATGGTGGTGCGGGAGGGGGGGGTGAATCGGCCGAAT
TTGGTTCGAAATTCGTTTGCTTTTTTTTGCACCTTATGGGCAGCAATACG
GGGATGGTTCAAAACACCGGCGATGCATCTTGGTACCTTCAGCGGTTCGG
AACACCCGAGCGCTACGTTGCCGGTGCTGTTGGCGAACTTTATTTTACTG
CTGCAGAAAGGCGTTCATCTCTCACTTGGGCTTGCTTGCATATTTGCTGA
TATGTGATTCACATCGACGAGTTGAAGAGAGAGCTGATTTCAACACCGCG
TGTAACAGCAGATTACGGGAACTGCATCGATATCATGCTTGATGGACGCG
CGTGCGGGGGGTTGGGGGGGCGTTCGTGGTGTTGCCCCAGGCCAGGGTTG
AAGACAGCCTGGCTGGTAAGCGAGGAGCATGACATGTTGTCTGCAACCTC
CCGTTCGTTGCAGGCACTTTATTACTCAAGAAGCCCCCTGCTGAGTTCGT
GCTAGTTTGTACTACAAGAAATGGAGTGTGGGGGGCCGTTAAGAATGACG
GATGGTTTTGATTTTCAATTGATATTTTGGGGCACTTTTTGTTCAAATTA
GGCGAACGCGAGGGAGTTGATTCGTTTGTAAATAAAAGGTATGTACTGCT
GTAAGGGCCGGTGGGTCTGTTCTTCTGGCATTTTCGGCGGTGGAAAAAAC
AGCTACCAGGTATGTACAACAGGTAGCTGGTGAGAACGCATTTTTTGTCT
TTACGTTTGCCGAAACATGAAAAGTGCATTTTATGTGTGATGCAAATTTG
TGTACGACCGTCCGTAGGGCCTTTCGTACCCGGGAACGTGCGTTCGGCCA
GTCTTTCCATGCCTTGGCGTACATGGGCGTGATATGTTTTGCCTCCTCCG
CTGTGTGGGGCAAACCCGTTCATCTTCATCAAACCCTCATTTATGTTGTG
ATACCGTTCGTTCGTGGCCTTCCTTTGTCAGACTATAGTCAATCCGCACG
CGAAAAAGGAGAACAGTGTACATTATCAACACGCACATTATCCATTCGTA
TCATATTTTCGGGCTGTTCGTTTTCTGCGGGAATAATACGTGAATCATAC
GCCTGGAGGATGTAACATGCAGTGACACCCGTGTGGTGTAACCTGTTGTG
ATATGTGGAGATATATCTTCTGGATCGAATATTTGAATCATGCTATTGCC
AGGCACATATGCACGGACTTGCCACGAACGCAAAGTAACTTTGCCCGTGT
GGTTGCCTGGTATAAACCTTGAGAAAAAATTAAAATAACGTGAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:440819..445963+

>mRNA_P-littoralis_Contig90.105.1 ID=mRNA_P-littoralis_Contig90.105.1|Name=mRNA_P-littoralis_Contig90.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1554bp|location=Sequence derived from alignment at P-littoralis_Contig90:440819..445963+ (Pylaiella littoralis U1_48)
ATGGCGAGTGTGGCAAGTTCGATGTCCCGAACTTCACCGAGTACACTACG
GGAGCTGTTAGAGAGTGTCCCCCAGATACTCGACGCACAGACGCCTGGCG
CGCTGGACCTTGAATCATGCGCCAGCACGGACGCTATGGAGGCCATGGCT
CGTGCCGAGGAACGCTTGCTCAAATCCGCGGACACGTTCTTTCCGCCGCT
CTTCAAAGTGTCGATCTTGAACAATCTGGGGCGTAATGATCCTTTCGCGG
AGCCTGATGATGAGGATTTCCCAGACCAAGCCCCGGTCGAGGATCTCAAC
GCAGAACGGCGGCGATTGGACGAGATCACGGGCCGCGTCGTTTCCGAACA
GTCCCACCTAAATTCCTTCGCCGAGAGGGTCCAGGAGCTTGCCGCACACC
TTCAAGGGCGGTTAGAAGAGCTGCCACTGCGGGCGCAGGCAGTCTCGAAA
TTCTCCTCCTTCGCGCCCGCCTCCGGTGCGAGCGGTAGCGCGGGACTGTC
AGTTCTGGACATGGTGTACGGCGGGGCCGGCGACGACGAGAAGGCTCGCG
AAGCTGAACACCTCGAGAACGAGAAATCTTTGAGGCGGGTTGAGGAAGAA
CTGGCCGCCGCCGCCGCCGAGGCGGAGAAGGTATCGCTGTTGGAGACAGA
GACTGCCATGCGAGCGGATATCGCCCAGCAGCAGCGAGAGGTAGAACTCC
TCGAGAAGGAAGAGCGGGCCGCTGCTGCGGCCCTAGCTGTGGAGAGTCCG
GGGTCGGGGTTGGGGTCGGATGCCGGGCGGAGGGCGGAGGCGTCCAGGGA
GACAGAGAACCTTGTCGGGGTGACGGGCATGTCGGAGTCCCAGCTGGAGG
CCTGCGTCCGAGAGGAGGAAGCTCTCGTGGAGAGGAACGCTAACATTCGG
GACTGGTACGCAGCCACAGTCGCCAGCGTGGAGCTCCTGGGAGGCGTTCG
CTTATCTCACCGGCTTCTTTTCGGCGGCGCCGGCGAAGTGGAGGGGATGG
AATTCATGGTGGACCTCGGAGCCGGCCAGATTATGGAGGTCACCGTGTCT
GCGGCGGACGGGAGATTGAGCTCCGTGCAGCTCTGCCACAGCCAGAGTAC
AGCAGCAGCAGCAGCAGATGCGGGAGCGCCGGAGGCGAGAGGGAGGGAAG
GGGGGGGCGTTTCGCTGTGGGAGCTGGAGGAGCTTAGGTGCACCGCGGAT
ACGCTCCCCACCCCGCAAAACTTGAGGACGCTCGTACGCGAGGCTTTGGG
TCGTGCGAGGCGCGCCGTGGTGAGAGAAGAGCACGTGCGGCTGATGCGAC
GCAAGTACCTGACGAGCTACAGGCCTCCCACGCGCGAGCTGACGGTTACG
ATGCCTGCCGGGGTGGTGGCCTGTGTCCGCCTGCACGTGGACTACCCAAA
GGTTGCGGGCGGAGCAGAACTAGTCAAGCTTACCGGGGTCGGCGGCTGGA
GCGCGGAGGAAACAGAAGAGATGTGCCGCCAGGTCAACCACTTGGCGCTC
TCAACGCTCGCGGATACCATGGATGCGCTTGAAGCTGCAATGGCCGCGTG
TTGA
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