mRNA_P-littoralis_Contig90.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.60.1
Unique NamemRNA_P-littoralis_Contig90.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.60.1 vs. uniprot
Match: A0A6H5JDP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP4_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 6.310e-36
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 2 
Query:  386 QGFDLVNVRFTFDSLRISRPCRRCWLFLSKHLWRFRRVMYTTSEGAVVCMSADEFAAADPPDHVSKGHRLAY 601
            +GFDLVNVRFTFDSLRISRPCRRCWLFLSKHLWRFRRVMYTTS+G VVCMSADEFA+  P DHVSKGHR  Y
Sbjct:  140 EGFDLVNVRFTFDSLRISRPCRRCWLFLSKHLWRFRRVMYTTSDGLVVCMSADEFAST-PSDHVSKGHRPDY 210
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDP4_9PHAE6.310e-3687.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:239107..242830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size612
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_005080.1
Cds size495
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791803.6321912-UTR-P-littoralis_Contig90:239106..2392231680791803.6321912-UTR-P-littoralis_Contig90:239106..239223Pylaiella littoralis U1_48UTRP-littoralis_Contig90 239107..239223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791803.6433136-CDS-P-littoralis_Contig90:239223..2393391680791803.6433136-CDS-P-littoralis_Contig90:239223..239339Pylaiella littoralis U1_48CDSP-littoralis_Contig90 239224..239339 -
1680791803.654245-CDS-P-littoralis_Contig90:239455..2395261680791803.654245-CDS-P-littoralis_Contig90:239455..239526Pylaiella littoralis U1_48CDSP-littoralis_Contig90 239456..239526 -
1680791803.6669848-CDS-P-littoralis_Contig90:239552..2397451680791803.6669848-CDS-P-littoralis_Contig90:239552..239745Pylaiella littoralis U1_48CDSP-littoralis_Contig90 239553..239745 -
1680791803.6801534-CDS-P-littoralis_Contig90:242715..2428301680791803.6801534-CDS-P-littoralis_Contig90:242715..242830Pylaiella littoralis U1_48CDSP-littoralis_Contig90 242716..242830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.60.1prot_P-littoralis_Contig90.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 239224..242830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.60.1

>prot_P-littoralis_Contig90.60.1 ID=prot_P-littoralis_Contig90.60.1|Name=mRNA_P-littoralis_Contig90.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp
MRFSAHQHQHQHQDFVLPRLFDSLGLASNAKLFNEAQARGKRGQTRKRSR
ATTTPPRRTLGGATVAAGRDTTTSRSSPAGMARSSPGASTASAAAPRPAC
TANRRRRHHNKNKAGRSGGGGGGGGCNASGFRPRERAFHVRLSEDLEALP
PVLAVPEQAPVEVP*
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mRNA from alignment at P-littoralis_Contig90:239107..242830-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.60.1 ID=mRNA_P-littoralis_Contig90.60.1|Name=mRNA_P-littoralis_Contig90.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3724bp|location=Sequence derived from alignment at P-littoralis_Contig90:239107..242830- (Pylaiella littoralis U1_48)
ATGAGGTTTTCCGCTCACCAGCACCAGCACCAGCACCAGGACTTCGTTCT
TCCTCGGCTGTTCGACTCCCTCGGCCTGGCGAGCAACGCCAAGCTTTTCA
ACGAGGCCCAGGCACGTGTTTGGTGTGTTTGTTTTCTCTGCAAAAGTAGC
ACCACCACCGTAGTCTTCACACTGCTGCAATGCATGTGATGTTATCGCAC
GTCAACTCTGTCCGCTGGGTGCGAACTACTGCGGTTACACCGCGGAACAG
CAGTCGCGGGACACACGGCTGATGTCTTTATTTACCAGACATACAGAAGG
GTTCCACCACCGGTTCTCTTTTATCTTATCATGACCGAAGTTTTGAACTG
AGCTGCTTCTTCTGGAATGTTGTGGGTGTTGCACTTGCTTCCTGCTGTGT
AGCCGCGTGTTGGTCCCGTAAACAATGGCAATCCCTCTGTGAAAGCTCTC
CACTTCTGCTGTGTGGTACCTTACGCAGCAGCCCAACCACAGAAGCAGCC
AACGGGTATCTACGTACTCTGGCTGGTGGGTGGAAGTGTGTTGTCATCCC
ATATTCTCTGGCACACTAGTCTGCACCCTGCGGTTCAAACTACAGGCTAG
GCCCATCGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACC
CCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTTCTCGCGAGCAGG
GATCCGCCGTCCCTGCCCTCGGTGGCGAAGCCGAATCTGTTTACTAACAG
TGTTGGCGTCTGTATTCGTACTATATACGAAGTACTCCGGAGTATAATAT
GTATTCGAAGTAATTCGTACTTCGAGTGTATGACAGCAGTGATTTCTGTC
TCTCCTGCCAGTTGGTTGAAGTCGACCAAGAAGCAGCCCCCCCCCCCGCA
AAGAACAGAAGCACCCGCTGCTTTTGTCGTCGGTCCTTTTTTCCATCAAT
ATGATATGATATGATACTTTTGTACAGACGGCAGTTTCATTATATACGGC
AGTACTGGTGTTCACATTTGGGCTTCATGAGAATTAACCAAAAAGAGAAC
CTTGCGTGACCTTGGTTACTTTTGTGTCAACCAACCCCGGCTGACGCGCC
TGATGGAGTGGTACATGTTCCCCTTGGTGTTCACTGGTGTCCAGAGCAGA
TGGGCGCAGAATGAAAAGGAGACAACACATACCTGGTAATTGGTACCCTT
TTGTATGCTAAGACATATTCACATACATACATACCTGGTACCACATACCA
ACCTGGTACCCTGGTAAATTAGATACAAAGATGTGCTTTCGCAGATTCTT
TTTGTCCTTGGACGTGCTTGCCCTCACGTTTGACCGCCACAAACCGTCGA
ATCGATCCTGCCTACAGGCCGGTTCACGCAAGAAACACCAAGTTCTGTCA
ACAGACTATCCCGAGCGCAATAAATACTCGATCACGACAAACATGGTACC
AAACTGACCGCCGTCAGTAGAGGAAGACCGTGACATTCCTGGATTTTCGT
TTAAGGCTTAAGCGGTGGCGCTAGGGGAGAAAATGTGTCAATTTCACTAA
ATGACGTGGAATAACACCCCCCTGAGTTCAATAGAAATCAGGCATTCAAC
ACTAAATGCTACGGAGTATATGAAATTAATTCGAGGTGTAAACACTTTTT
TCGACCTCGCATGGTCTCTCTAGGCCCCGAGAAAGGTGATTACGATTTAT
TGTTGCGAAATTTCACAAAAACTGACGTAGTTTGTCTAATAATAGCATTC
GAGTTCTGGACAAGGGCCAAATCCATAACTTTATCCAAGCATAGTTGAGG
ATTTTAGGGACCTTGGACCATACTGAAGTGCGATTTCTCAATTGAAAAAA
TGCAAAAATAACAATTCTTTTTAACACACGTGGTCTCACTGGGACCCAAG
GAATGTCTCCACGAAATAGTTTTTCATAACTTTACACAATGACGGAGTTT
GGCCAATAATAGCGGAAAAGTTCTTGCAATCGGCCGATTCCGTACTAAAC
TGAAGTAATTAGGGTTTCGTTTAGGACTTGACCACACTAAAGTGAGTTTT
CTCACGCATTTTTTTCGAGTAAGACCATGAAATTTTGCATGCATGTTCTT
TATCCTACTGCGCAACTTTCTGTTGTCGGGGTGCAGCGACTTTTTGTTTT
TTTAACCGGGTTTCTGGGGTCCCAAGTGAGTCATCTAGACCAAAAAATAC
TTTTATACAAATATATCTATGTAATAAATGAAAAAATTGCTGCACCCCGA
CAAAAAAAAGTTGCGCAGTAGGACATGGAACATGCATGCAAAAATTCATG
GTCTAACTCGAAAAAACCGCGTGAGAAAATGATGTTGAATAGAAGTACAT
TACTTTCTTCTTGCTTGAACCAGCCTGTACTCGTTGTTGATTTTCGTGTG
CACGCAGTGCCTGCTGTTATTCGGGCTTCCTTCCTTCATAAAGCGTGCGA
CCAACGCAATGTCGTACACATCGGTGACAGCGAGTAATGGCTCGCCCGAT
CCCGGCATATGATATCGCGCATCTTTTCCCGTAATGTAACATTTTGCATC
AAGGAGTTGCTGTGACTGCTGTCATGTGCAGAGTTGGCGCCGACATAAAA
GCACGGAAACGACACGGCGGCGTTATCTGGCCGAGGCTCACGAACTCTAC
TTTTCGCGAAGTATTTCTTATCGTGAGCTACCAGAACATCAGGCTCGAAC
AGTGTTACCGTGGGATATGAGTAGAATTTACAGCGGGGCACCCGCTGTAT
GAGCTGTGCCACAGTATGATAGCTTAGCCAAACTTTCTTATTCTTGTTGT
GATTTTGAGCCCCAATTTTTCGATGCTGTGCTTCTCACAGCAAGCGGGCG
CTACCGTCTCTGCGAATTTCCGCAGTGTCTCTCTCTCCGCACTGCTGCCC
AGTCGTGCCGAATGCAGGAACACTACAGTAGTAGAGTAGCCGTCAGCCCT
GCATGCACACTTGGCAATCCTCAATTGCTTTTTTTCATCTCTTATTTGTT
CATGCTTGGCGTTTGTCGGCGTCTTACCCACTCGAAATGCATCTCGCAAC
AGGCGATAGCTCTCCGTCGAGTGGGGGCACGGCAGGGGGAAAGAGGGGGC
AAACAAGAAAAAGATCAAGAGCTACGACAACCCCGCCGCGAAGAACACTA
GGGGGAGCCACAGTTGCCGCGGGGCGGGATACAACCACCTCACGATCATC
GCCAGCAGGGATGGCCAGGTCGTCGCCTGGGGCTTCAACAGCCTCTGCAG
CGGCCCCGAGGCCAGCGTGCACAGCGAAGTGACGGCTCTGCGGTCCCTTT
TCAGCCGTCGCCGCCGTCACCACAACAAAAACAAGGCGGGCCGTTCGGGT
GGCGGCGGCGGCGGCGGCGGCTGCAGTAGCAGGGGAGGGGTTTCTCACAA
TAGTAGGCTTTCTCACAAAAACAAGGACAACAACCATCACCATCACGACC
ATAGCTCACCGCGCGGCGGGTCTGGGTCTCGTCGCTTGGAGATGCTTCAG
GGTTTCGACCTCGTGAACGTGCGTTTCACGTTCGACTCTCTGAGGATCTC
GAGGCCCTGCCGCCGGTGCTGGCTGTTCCTGAGCAAGCACCTGTGGAGGT
TCCGTAGGGTGATGTACACGACCTCGGAGGGCGCCGTGGTGTGCATGTCG
GCGGACGAGTTCGCGGCTGCGGATCCCCCGGACCACGTCTCGAAGGGGCA
CCGCCTAGCGTACTACGGAAAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:239107..242830-

>mRNA_P-littoralis_Contig90.60.1 ID=mRNA_P-littoralis_Contig90.60.1|Name=mRNA_P-littoralis_Contig90.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig90:239107..242830- (Pylaiella littoralis U1_48)
ATGAGGTTTTCCGCTCACCAGCACCAGCACCAGCACCAGGACTTCGTTCT
TCCTCGGCTGTTCGACTCCCTCGGCCTGGCGAGCAACGCCAAGCTTTTCA
ACGAGGCCCAGGCACGGGGAAAGAGGGGGCAAACAAGAAAAAGATCAAGA
GCTACGACAACCCCGCCGCGAAGAACACTAGGGGGAGCCACAGTTGCCGC
GGGGCGGGATACAACCACCTCACGATCATCGCCAGCAGGGATGGCCAGGT
CGTCGCCTGGGGCTTCAACAGCCTCTGCAGCGGCCCCGAGGCCAGCGTGC
ACAGCGAACCGTCGCCGCCGTCACCACAACAAAAACAAGGCGGGCCGTTC
GGGTGGCGGCGGCGGCGGCGGCGGCTGCAATGCTTCAGGGTTTCGACCTC
GTGAACGTGCGTTTCACGTTCGACTCTCTGAGGATCTCGAGGCCCTGCCG
CCGGTGCTGGCTGTTCCTGAGCAAGCACCTGTGGAGGTTCCGTAG
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