mRNA_P-littoralis_Contig90.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.27.1
Unique NamemRNA_P-littoralis_Contig90.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.27.1 vs. uniprot
Match: D8LIN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN3_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 2.020e-60
Identity = 137/228 (60.09%), Postives = 159/228 (69.74%), Query Frame = 3 
Query:  213 MTLALGGSPLVGRHIKRGGKSPG-AATPKPPGTKGAPAALATDESGIVLDRLGKEIVTLLQAGGAKKKAVRRRLRLGINEVTRFLEAIAAAAAATVPEPSSFSSCGGAPPRGKDGESSKNKTARQGEGGGDGDRPGAAGGKRPACSPHPTSSPVPPAAAIVLICRDVRPARLVEHVHALVALTGTPHLILSQSSSSLGEMFGCKTMAAMAVCPARSPPPLPQALSRPP 893
            MTLAL GSPLVGR++KRGGKSP  A++P   GTKGA  AL T+ES IVLDRLGKEIVTLLQAGG+KK A RRRLR+GINEVT+FLE+ AAAAAA    PSS S       +G    S K  +A+ G G          G +    +P P  +P     AIVLICRDVRPARLVEHVHALV LT TP L+LS+ SSSLG +FGCKTMAA+A+CPAR+P P   +   PP
Sbjct:    1 MTLALAGSPLVGRNVKRGGKSPKHASSPGSSGTKGAALALETNESKIVLDRLGKEIVTLLQAGGSKKDAARRRLRMGINEVTKFLESKAAAAAAPPKTPSSASRGSSINRQGISKASGKCDSAQAGAG-------AEVGARASLVAPAPPHTPP----AIVLICRDVRPARLVEHVHALVVLTATPFLVLSEPSSSLGGVFGCKTMAALAICPARTPRPAQTSSISPP 217
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BLAST of mRNA_P-littoralis_Contig90.27.1 vs. uniprot
Match: W7TQK6_9STRA (Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQK6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.520e-5
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:  684 AIVLICRDVRPARLVEHVHALVALTGTPHLILSQSSSSLGEMFGCKTMAAM 836
            +++LICRDVRPARLVEHV  L A+   P  +L +++S+LG+  G K +AA+
Sbjct:  198 SLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAAL 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIN3_ECTSI2.020e-6060.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TQK6_9STRA1.520e-550.98Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:125844..129829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2108
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog description50S ribosomal protein L30e-like
Ec32 orthologEc-11_004520.1
Cds size1098
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.27.1prot_P-littoralis_Contig90.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 126011..128986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791802.6883228-UTR-P-littoralis_Contig90:125843..1260101680791802.6883228-UTR-P-littoralis_Contig90:125843..126010Pylaiella littoralis U1_48UTRP-littoralis_Contig90 125844..126010 +
1680791802.775587-UTR-P-littoralis_Contig90:128986..1298291680791802.775587-UTR-P-littoralis_Contig90:128986..129829Pylaiella littoralis U1_48UTRP-littoralis_Contig90 128987..129829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791802.7113333-CDS-P-littoralis_Contig90:126010..1261041680791802.7113333-CDS-P-littoralis_Contig90:126010..126104Pylaiella littoralis U1_48CDSP-littoralis_Contig90 126011..126104 +
1680791802.7253516-CDS-P-littoralis_Contig90:126953..1270881680791802.7253516-CDS-P-littoralis_Contig90:126953..127088Pylaiella littoralis U1_48CDSP-littoralis_Contig90 126954..127088 +
1680791802.7354517-CDS-P-littoralis_Contig90:127491..1278541680791802.7354517-CDS-P-littoralis_Contig90:127491..127854Pylaiella littoralis U1_48CDSP-littoralis_Contig90 127492..127854 +
1680791802.7512085-CDS-P-littoralis_Contig90:128324..1286661680791802.7512085-CDS-P-littoralis_Contig90:128324..128666Pylaiella littoralis U1_48CDSP-littoralis_Contig90 128325..128666 +
1680791802.7650135-CDS-P-littoralis_Contig90:128822..1289861680791802.7650135-CDS-P-littoralis_Contig90:128822..128986Pylaiella littoralis U1_48CDSP-littoralis_Contig90 128823..128986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.27.1

>prot_P-littoralis_Contig90.27.1 ID=prot_P-littoralis_Contig90.27.1|Name=mRNA_P-littoralis_Contig90.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=366bp
MSASSGGRTKKQGRSMTLALGGSPLVGRHIKRGGKSPGAATPKPPGTKGA
PAALATDESGIVLDRLGKEIVTLLQAGGAKKKAVRRRLRLGINEVTRFLE
AIAAAAAATVPEPSSFSSCGGAPPRGKDGESSKNKTARQGEGGGDGDRPG
AAGGKRPACSPHPTSSPVPPAAAIVLICRDVRPARLVEHVHALVALTGTP
HLILSQSSSSLGEMFGCKTMAAMAVCPARSPPPLPQALSRPPHSAADPGG
TEDIIAQQPTSSGQDGSRSGGSGSGGGEGGGVGARSGGGGSSAMLSATRE
RVDGGGEEEGRKEEGAGRGELVGGGSGGGSVAPDDRDRVAVDEDVDSFIE
FLRRKVRVRSSTTTT*
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mRNA from alignment at P-littoralis_Contig90:125844..129829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.27.1 ID=mRNA_P-littoralis_Contig90.27.1|Name=mRNA_P-littoralis_Contig90.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3986bp|location=Sequence derived from alignment at P-littoralis_Contig90:125844..129829+ (Pylaiella littoralis U1_48)
CCGCGTAGAGCTGGCAAGAATAGAGACGCGGACAGGCCTTCCTTCTCTCT
CCGTGGCTACTGGGCCCCACCCGGAAGGATCGTCAAAAGAAATCTGCTGT
GTCGAGTTGCTTGTTCAGCTACGTCAAACCGTAGCTGCTGTGCAGCATTG
TACATACAGTTTTGAAGATGTCGGCTAGCTCGGGTGGCCGCACGAAGAAG
CAAGGGCGTTCGATGACCTTGGCACTGGGAGGGAGCCCCCTTGTAGGCCG
CCACATCAAACGTGAGTTACTCGGAAAACTAAGAGCAGCGCACGCACGGC
AAACTTCGTCATGTCTGTGTCGCACGATCCCTTGGTTCTTCATGCCAAGA
GAGTAGACAAAGCTATAGCAGCAGGACGGTTTGAGCTTATGTACGGCAGG
CCGGGAACACTGCTGCTCATCTGCTTACAGTACAACGGCTGTGTGTTCTA
TCCATTTATATTCTGGGTACCAGTCCCCTTTCGGAATGACGTATGAAGTG
GGTATGGAAGTTTACTTTAGCCTGAACTTGATCTATTCTGCCCGGTGGGA
TGTGCTTCCTCCTTGGGTGTAAGAATCTAACATACCGGAGTACTACTGCT
GTTACTTGTACCTCAACTGAGATTCCTCTTGTCTTTTGAGGTGTATGTCA
TCGAAGGCCGTACAACACTACACGACCTGCGGTGTGCTCCTACTGTATAT
ATCAGCGTCACCGGTGGGGTGGTGTCTGCTCTTCCGTCCGATACGATACG
AATACATACATACATGGGCGTCGAACGATAGGTACTACCTTGTATTATCA
GTCGAATATTTTAGTTGTTAAATGTGTGAATGTCACGAAGTACTTCGTAA
AATACTCCGGCATTTTTTGTGTACTCGTAGTAAAATACAATCTTCGGTGC
CATGATACCTTCCTCCTATGCGACCCTGACTAATGAGCCTAACTTGTGTC
GAAAGGAATAGACTGGCGTCCAGAATAGAAGCATGACAACGTTACTCACA
CCGAGAGACGTCAATGGTTTTCAAATGTAAAGACAACAACAACAACAACA
ACAACAACAACAACAACAACTACACGTCGGCGTGGGTCTACCCTCTACGA
TATCATAAAGGTGGAGGAAAGTCACCGGGCGCAGCCACGCCAAAGCCTCC
GGGGACAAAGGGTGCCCCCGCAGCGTTGGCGACGGACGAGAGCGGTATTG
TACTAGACAGGCTGGGGAAGGAGATCGTTACCCTACTCCAAGCAGGTACG
TTTGAAGTGTGGATGTGCGCATCTCACCGCGCTTTCGTTGTGGAGGAGAT
ATTTCGCACCGTGTAACATGCGTTGCGACAGAGTGAGATCGTCTTATCTC
TCAATACCGGCGTATGTGTGAGTTGTCTGCGTAAAATACCTGCTGGCGAC
CGTCACTTTTGTCCCCGTCGTGGAAACCTAGAAACAGGCATAGCTTGGCA
GCAGCGCCCAGCATTTTGTGCCAATGCACGTAGGCAGAACGCGAGTCTAC
GCGTGACTACTCACTTGGGATGTTGTTCGGATAATACGCATCCCTTTGTT
TACTGCACGTCTCCGCTCCGGTCCCTCCTCCGCCCCCACCCCGGCTCCAT
TTCGCCCCCGCCCCCGCCTCCGTGCGACGCTCTCCCGCCTCCTTCCAGGG
GGCGCCAAAAAAAAGGCGGTCAGGCGACGCCTTAGGCTTGGAATCAACGA
GGTGACCAGGTTCCTCGAGGCCATCGCCGCCGCCGCCGCGGCCACTGTCC
CTGAACCCTCCTCCTTCTCGTCGTGTGGAGGTGCTCCACCGAGAGGCAAG
GACGGCGAAAGCTCGAAGAACAAAACAGCCCGCCAGGGAGAAGGAGGAGG
TGACGGAGACAGGCCAGGAGCGGCGGGAGGGAAACGCCCCGCTTGTTCTC
CCCACCCCACCTCCTCCCCTGTCCCGCCGGCTGCTGCCATTGTGCTCATC
TGCAGGGACGTGCGGCCTGCCAGGCTTGTTGAACACGTTCATGCGCTGGT
GGCGCTCACTGGTGAGCTGGGCTTGGGTTCGCTTGGTCGAAAATCGTGGT
CTGACTTGCTTTTTTCTGCACAACACTCTTTCGTCGTTAGTGGCACTACT
GGCGCAAGCACGACCTTTTTTTTCGTTTTGCGCAAGCGAAGCAAGCTCAG
CAAACACGCAGCACGTAAGCTCAACGGACACTTGCTTTCTCTCCGTTGTT
CTGTTCGTCTCGTTGCCGGGTATCAGCCTCTGTCTCTGTCGCTCTCTGCG
TCGGATCTTTCTCCTCTCTATCTGCAGTAGTAAATGTTTGCCATCTTGCA
GCTCTTCACCGCGTGGTATTCTTTCGCCCGTGCCCCCCTCTGTCCTCGCT
GTGTGCTTTCTGCCTGCGCCTGCCCTGACCATGCATGCATGCATAAATGC
ATGCACTCCTAACCATCCATCCTGCTATATCTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTTCTATTCACCCTTCCATCCAGGAACTCCTCACTTGATTTT
GTCCCAATCCAGCAGCAGTCTCGGGGAAATGTTTGGCTGCAAAACGATGG
CAGCTATGGCCGTTTGCCCGGCCCGATCCCCGCCGCCACTGCCACAGGCG
CTTTCTCGCCCTCCACATTCGGCGGCCGACCCAGGCGGTACAGAGGATAT
CATCGCACAGCAGCCAACCAGCAGTGGCCAAGACGGCAGCAGGAGCGGCG
GCAGCGGCAGCGGCGGCGGCGAGGGTGGTGGAGTCGGGGCGCGCAGCGGT
GGCGGCGGCAGTAGTGCTATGCTTAGTGCTACGAGGGAAAGGGTTGATGG
GGGTGGCGAGGAAGAGGGACGGAGTGCGGAGGCGGAATCGCCGGGAGCGA
CGGCGGCGGTGGTGGGTGGTGACGGTGGGGGAGATGTCGGAGAGGAACAG
GAGAGGGGCGGGGAGGGCACAGAGGCGGGAGATACTGAAGTGGCTGTGCG
GATGACGAAGGACGGGAGGAAGGAGGGAGAGGAGGAAGGGGCGGGGAGGG
GGGAGTTGGTTGGGGGCGGTAGCGGGGGAGGAAGTGTAGCGCCGGACGAT
CGGGATCGGGTTGCTGTTGACGAAGACGTGGATTCATTTATCGAGTTTCT
CCGAAGGAAAGTTCGGGTCCGTTCCTCGACCACGACCACCTAGGAGCTGC
GCCGATGCACGTGCATATTTTTTAAGCAGAGAGAGATCGAAACGGTTCCC
CCGCAGTTTTGCTTTCAGTGGTTTGCATTTTTTTTGTCGTGCCTGCCCGA
GCCTTTGGATCATGATTTTTTGCCTTTTGGAATCACTTGGCGACCCGCGA
TATCGGTCGTCACTAAGATTCTGCGATGCGGATCGCGAGTGCTCCTGTTT
CAGTCTCTGTGTTTGAATGAATGACCTGCCCATTTCGTTTTATTTTGTTT
GATATGTTGAGACGTATCGGGGCGATAGAAGACGTGCATGGATGAGAAAT
AGTGAATGAAAAAAAAGGACGAAAAAGAGACGGTTTGGGAAAAAAGAAAA
AAGAGCTTTCCCAGCAGTGGTTTTTTCTGCGAGTAAAGAAATCGACAATA
TAGTTTTTGGTACATACAAATTCGCTCCCCTTAAAGCGGCAACCCGCGGA
AGCTCGTTACGGCAGGTAGTACAGCAGTGGAGCATTAAATAACTGATGGC
ACGCCGTCTGGTTTAGCCAGCGTGCATGTCCCTACTACTTCGAAGTAGGA
TTTTTGCTTGAAATCAGAGGGGCGCATAAAAAGACCGCAGCATGAAAAAG
TGGCGTGCGTGGGTTGCTGTACACACGAAACATACACAAAAAATGTAGCG
AGGGTGCTACTACTGCTGCTGTGAGTCTGCATACCCTCTGCTGCATGTTT
TTCTCGCAGAAACAGGGTCACCAGGGTGAGGAGCACGGCATCGAGATAGA
TCGAGCTTGCACCTGATGCTCTTCAACGGCGCCATTGAATAGCATAAAAA
TCGGTAGGCATGCCTAGTTCACATACGTGCATGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:125844..129829+

>mRNA_P-littoralis_Contig90.27.1 ID=mRNA_P-littoralis_Contig90.27.1|Name=mRNA_P-littoralis_Contig90.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1098bp|location=Sequence derived from alignment at P-littoralis_Contig90:125844..129829+ (Pylaiella littoralis U1_48)
ATGTCGGCTAGCTCGGGTGGCCGCACGAAGAAGCAAGGGCGTTCGATGAC
CTTGGCACTGGGAGGGAGCCCCCTTGTAGGCCGCCACATCAAACGTGGAG
GAAAGTCACCGGGCGCAGCCACGCCAAAGCCTCCGGGGACAAAGGGTGCC
CCCGCAGCGTTGGCGACGGACGAGAGCGGTATTGTACTAGACAGGCTGGG
GAAGGAGATCGTTACCCTACTCCAAGCAGGGGGCGCCAAAAAAAAGGCGG
TCAGGCGACGCCTTAGGCTTGGAATCAACGAGGTGACCAGGTTCCTCGAG
GCCATCGCCGCCGCCGCCGCGGCCACTGTCCCTGAACCCTCCTCCTTCTC
GTCGTGTGGAGGTGCTCCACCGAGAGGCAAGGACGGCGAAAGCTCGAAGA
ACAAAACAGCCCGCCAGGGAGAAGGAGGAGGTGACGGAGACAGGCCAGGA
GCGGCGGGAGGGAAACGCCCCGCTTGTTCTCCCCACCCCACCTCCTCCCC
TGTCCCGCCGGCTGCTGCCATTGTGCTCATCTGCAGGGACGTGCGGCCTG
CCAGGCTTGTTGAACACGTTCATGCGCTGGTGGCGCTCACTGGAACTCCT
CACTTGATTTTGTCCCAATCCAGCAGCAGTCTCGGGGAAATGTTTGGCTG
CAAAACGATGGCAGCTATGGCCGTTTGCCCGGCCCGATCCCCGCCGCCAC
TGCCACAGGCGCTTTCTCGCCCTCCACATTCGGCGGCCGACCCAGGCGGT
ACAGAGGATATCATCGCACAGCAGCCAACCAGCAGTGGCCAAGACGGCAG
CAGGAGCGGCGGCAGCGGCAGCGGCGGCGGCGAGGGTGGTGGAGTCGGGG
CGCGCAGCGGTGGCGGCGGCAGTAGTGCTATGCTTAGTGCTACGAGGGAA
AGGGTTGATGGGGGTGGCGAGGAAGAGGGACGGAAGGAGGAAGGGGCGGG
GAGGGGGGAGTTGGTTGGGGGCGGTAGCGGGGGAGGAAGTGTAGCGCCGG
ACGATCGGGATCGGGTTGCTGTTGACGAAGACGTGGATTCATTTATCGAG
TTTCTCCGAAGGAAAGTTCGGGTCCGTTCCTCGACCACGACCACCTAG
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