mRNA_P-littoralis_Contig90.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.25.1
Unique NamemRNA_P-littoralis_Contig90.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.25.1 vs. uniprot
Match: A0A6H5K792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K792_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.680e-47
Identity = 136/241 (56.43%), Postives = 157/241 (65.15%), Query Frame = 1 
Query:   94 EGVLLIKRLQPLAVVKICLRRLGLAHTGAEGETEVQVQGSAQLQKLVRQVVDHKRVATVLKELQERVTMRRRDKLAESEGRPLQGQGRSGRAARRKGKG-KRASAETDGRQQXXXXXXXXXXXXXXXXXXXXXXXXXXGSAGSAFVSLSGEPPSNDEKGSASRCVQQKNYYNKSVANAMSNAQPERRRPNGGSRSAPAXXXXXXXXXXXXXXSD-------REKSEPGWAGADRVAGWGRG 792
            E VLLIK LQPL+VVKICLRRLGLAHTG +GE EV+V+G A+LQ+LV +VV+HKRVA V++ELQERVTMRRR+KLAESEGR L GQGR   A  ++GKG K+  A+   RQ                            +AGSAFVSLSGE PS+D     S     +NYYNK +ANA +N     RRPNG   S   XXXXXXXXXXXXXX         R  +EPGWAGADR AGWGRG
Sbjct:  138 EEVLLIKSLQPLSVVKICLRRLGLAHTGVQGEAEVEVEGGAELQRLVGKVVEHKRVAVVMEELQERVTMRRREKLAESEGRSLPGQGRG--ATGKQGKGNKKTPAKIHERQGGARKSGVARAAAAAAT-----------TAGSAFVSLSGESPSDDHDAGPSSTS--RNYYNKDIANAHANPALVGRRPNGQPSSXXXXXXXXXXXXXXXXXXXXXXXXKARSSTEPGWAGADRAAGWGRG 363
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BLAST of mRNA_P-littoralis_Contig90.25.1 vs. uniprot
Match: D8LIN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN2_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.690e-35
Identity = 99/156 (63.46%), Postives = 115/156 (73.72%), Query Frame = 1 
Query:   94 EGVLLIKRLQPLAVVKICLRRLGLAHTGAEGETEVQVQGSAQLQKLVRQVVDHKRVATVLKELQERVTMRRRDKLAESEGRPLQGQGRSGRAARRKGKG-KRASAETDGRQQXXXXXXXXXXXXXXXXXXXXXXXXXXGSAGSAFVSLSGEPPSND 558
            E VLLIK LQPL+VVKICLRRLGLAHTG +GE EV+V+G A+LQ+LV QVVDH+RVA V+ ELQERVTMRRR+KLAESEGR L GQG++  A R++GKG K+  A+ DGRQ           XXXXXXXXXX            FVSLSGE PS+D
Sbjct:   35 EEVLLIKSLQPLSVVKICLRRLGLAHTGVQGEAEVEVEGGAELQRLVGQVVDHRRVAVVMDELQERVTMRRREKLAESEGRSLPGQGKA--ARRKEGKGNKKNPADIDGRQGGARKNGAARAXXXXXXXXXX------------FVSLSGESPSDD 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K792_9PHAE2.680e-4756.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIN2_ECTSI1.690e-3563.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:119842..123503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size824
Hectar predicted targeting categoryother localisation
Exons5
Cds size822
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791802.5966666-CDS-P-littoralis_Contig90:119841..1200701680791802.5966666-CDS-P-littoralis_Contig90:119841..120070Pylaiella littoralis U1_48CDSP-littoralis_Contig90 119842..120070 -
1680791802.608542-CDS-P-littoralis_Contig90:121084..1212541680791802.608542-CDS-P-littoralis_Contig90:121084..121254Pylaiella littoralis U1_48CDSP-littoralis_Contig90 121085..121254 -
1680791802.6242518-CDS-P-littoralis_Contig90:121448..1215811680791802.6242518-CDS-P-littoralis_Contig90:121448..121581Pylaiella littoralis U1_48CDSP-littoralis_Contig90 121449..121581 -
1680791802.6374643-CDS-P-littoralis_Contig90:122704..1228801680791802.6374643-CDS-P-littoralis_Contig90:122704..122880Pylaiella littoralis U1_48CDSP-littoralis_Contig90 122705..122880 -
1680791802.6526535-CDS-P-littoralis_Contig90:123389..1235031680791802.6526535-CDS-P-littoralis_Contig90:123389..123503Pylaiella littoralis U1_48CDSP-littoralis_Contig90 123390..123503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.25.1prot_P-littoralis_Contig90.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 119842..123503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.25.1

>prot_P-littoralis_Contig90.25.1 ID=prot_P-littoralis_Contig90.25.1|Name=mRNA_P-littoralis_Contig90.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
ERQGQREGETPPSSLVAGDSTAAAAAATGPAEGVLLIKRLQPLAVVKICL
RRLGLAHTGAEGETEVQVQGSAQLQKLVRQVVDHKRVATVLKELQERVTM
RRRDKLAESEGRPLQGQGRSGRAARRKGKGKRASAETDGRQQEGGGGGGG
GGGGKKKTDSARRQHAAAGSAGSAFVSLSGEPPSNDEKGSASRCVQQKNY
YNKSVANAMSNAQPERRRPNGGSRSAPAAPAAKAPKSKNSSSSDREKSEP
GWAGADRVAGWGRGGGRSKNGGRG
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mRNA from alignment at P-littoralis_Contig90:119842..123503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.25.1 ID=mRNA_P-littoralis_Contig90.25.1|Name=mRNA_P-littoralis_Contig90.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3662bp|location=Sequence derived from alignment at P-littoralis_Contig90:119842..123503- (Pylaiella littoralis U1_48)
GAGAGGCAGGGGCAGAGGGAGGGGGAGACACCCCCGTCCTCCCTTGTTGC
TGGTGATTCTACTGCGGCAGCGGCGGCGGCGACAGGGCCCGCTGAGGGGG
TGCTGTTGATCAAGGTCAGTTGAAGGTTGCGCGTGATCGCCACCTTATTG
TGCATCGCTCACATGGATGGAAAACTCTGCCGACACGTATGTACCAAAAC
AGGAAAGAAGGAAGGACGTAAGGTAGGAAATATAGGAATAAATTAAAGAA
GGACATGAAGGGAGGAAGGAAGCAAAGGAAGGAAGGAAGGACGGAAGCAA
GGGAGGGAGGGAGAGAGGGAGGGCAAGAGGAGCATACTGCTGGTAGGTGG
CAGCATGGGCGCGGAAAATGCGATGGTACCCCCACGCACTCCACACTCAT
ACCCACCCCCGTGCCTTCCACGAGACCCGCCAAAAACCTCATGGTGCCTC
GCAATTGGTGCAAGAAACTTTTGCATGCCTGGTTAGTGGAAACCCAGTTA
TAATCCTTTTTTCCCGGTATGTGGTCAAACGGTGTCATGGTTCAAGCCAA
GCAGCAAAGAAGCACACCTTCTCACCCCACGCTCCCCTTCCACCCGCCTT
CAACAAACGTTTGACGTGCGCAGAGGTTGCAACCGCTGGCGGTGGTGAAA
ATATGCCTCCGTCGGCTGGGTTTGGCGCACACCGGGGCCGAAGGCGAGAC
GGAGGTGCAGGTGCAAGGGAGCGCCCAGCTTCAGAAGCTGGTCCGACAGG
TGGTGGACCACAAGCGCGTCGCCACCGTCTTGAAAGAATTGCAAGAGAGG
TGAGGCGACGGCAGGCGAGCGCATAGGGGGGGAGCGGGCGGGCGGGGGGG
GGGGGGGCAGGGGCGTGCTCGTTATTTGGCCGTTGACCACGGACCCCCTT
TTGAGACGGAGCACTGCTGTTCCTACTCCTGACAGGGCCTGGCGGGGGGG
CAGGGTGTTCATATCACAATACCAATAGATCGCTGCTGGTGGTCGTTGCA
CGTAAGCCTATGATGGGGATTTCGAAGACATTCAAAGTGCGACTGCCGGT
TGGGCTGGAGGCGGCCAGCCGCTTTTTATTTACGACGGTGATGGTCAGAG
TGGTGGTCTCGTCATCAGTCGGCGTTTTTTTGTCGCCTCTGCCCGCCCCT
TGCCTTCGAACCGTGTGCTTCTGCTAAAAGTTCGCGGAAGGGTCATGTGA
TTTCATCTTTACATTTTTTTGCTACTGTTGTGCAATGCAACAGTTAGTGA
AACAAAAGCTTTTGGTGTGACGTTCCTTCTGTGTGACCCCCGCTGGTTCG
CCCACCTCATACCGGTAGTTCTAGACTGTTTTCCGGAATAAATGGGATGC
AACGACACACAATGTGCGACAACGGTGCGCACGGGGGTGATGATTTTTGT
TGTACTACACCGAGGAGGCGCAATAGTCTTGGAGGAGGCGCTCTCGAGGA
AGCGTGCAGCGGGCGGAACAGCGCATGATTTTGTCGTACGGTAACAACCC
AAGTACATTCTGTTCTTTGCCTTTTCTCGGAGAGTTTGTGGAAGAAAGAT
CTTGCACTTTTTTGTGGCTTACCATTTCTTAGAGAGCTTGTAAAACAAAG
ACCTTGCATTTTGCTCTGACTTGCCTCCTCTTGGAGAGTTTGTAATGATG
AAGACCTTGCGTTTTTCGCGTTTTTTGTTTTCGTGTCTGGTGTTCTGCTG
TTTGCTAATCGGAGCGATGGCGAGGAGAAAGAAAAAGCTGGCGGAACGTG
AAAGTGCGAGGGAATCTGTTGTGTGTTTGCGTCGTGTTGTGTTTCGTGTT
TTGCCCTTTGCTGGTCAGAGTGACAACAAGAAGGAGAACATTTACTGGTG
AACAGCGGGAAATAAAAAACGCAAGGACTCTGCTTGCGTTGTGTTTCGTG
TTCTTGTGCTCTTGGTGACCAGAGTGACGATGAGGAGGAGAGACAAGCTA
GCGGAGTCGGAAGGACGGCCCTTGCAAGGCCAAGGCCGGAGTGGCCGAGC
CGCGAGGAGGAAGGGGAAGGGCAAGAGGGCGTCCGCGGAAACAGACGGGC
GACAGGTGAGGAACACAGAGAAGGGGCGGGGGAGGGGGCGGGGGAGGTTC
GGAGAGACAGCAAACAGCAACAACAACAACAACATTCTACGCCAGTATCA
TATGCGTCGCTCGTCGGCTGGGCGTTTTTTTTTGCCTTATTCATTATCGT
GGCTCCTGTTCCGTTGGTCTACCGCATGCACGCGCCGCGTACGCGGCAGC
AGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCAAGAAGAAGACA
GACTCTGCGCGCCGACAGCACGCCGCTGCGGGCTCCGCTGGCTCCGCGTT
CGTGTCGCTTTCGGGGGAACCTCCAAGCAATGACGAGAAGGGCAGCGCTA
GCAGGTGTGTACAGCAAAAGTGTGTCTTCTGTCTGTCTGTCTTTGCCTGT
CTGTTTGTCTGTTTGTCTGTCTGTTTTGTGTGTGTCTGTGTGTGTCCCGT
TATCCTATCTATTTTGGACGCCAGTTTACACCTTTCAGTTTACGCCGGGG
GCACCAGCCGGGGTTGGACACACAATACAAGTTGACGACTCGTCTTATAG
TACTTAGGTCGCAAAGGATACCATGGGAACCCCTGAAATGGTTTTTATAT
GAGCTTGATTATTACTCCACAGCAGACAGAGAAACAATAGATGGGTTGGG
TGCTGTCTGTTTCGCAAAGGGTGACTGGTCGGCGTTGGGGCAAGGAAAAA
ACGACACTCCACTGGCTCCCGAAGTGCGGCTGATGGACAGGCAGAGGCAG
CAGCAGTATTGTTTGCTCACACGCATGATTTATCATATATGTGAGAACGT
TTGCGGACTGAGTTCGTGTGCGAGCCAATTCGTCCTCGCCCACCCCAATG
GTTGAAGCCGTAGGAAATACATCTGTTTATCTCGTCGAGGGGTTTGGAAA
TCAAGGTATGCGAAGTATGTATTGTTTGATGTCGGCGCGCGCCCTCCTTT
TTGCGGCGCAGCATGCAGTTCCAGCTCCCGAAATGCCTCCTTTTTTTTTA
ACCCGCGTTAAGGGCACGTTGTCCAGACTTATACTGCTGAGGTACTTGAT
TCTGCTGACCGTCGCCAGCGCTGATGGGTGTGGTGCGCCGAGTACTCTTT
ATCTGCGTATCATGTTTCACGTAGAGGTGGATCCCCGTGCGAACCTGTAC
CCAATCGGGCACGACCGCCTAAGAAAAGTGTCGTGTTTTTACAAATGCGC
TACGAAATACTTAAGTATACCTTAAGCGACAGAAAAATATGTTGAACATA
CCAGGTAGGTAGTTTTTGTTTTTGTAGCTGTTGGCGGGTTGGTACACAAC
CTAACGTGCGCAACACCCCGGTCCCCCAAATCACCCTCACCCACCCTGCC
CCCCCCCCGAACACTGCCTTGGTTTTTTCACAGAAACTACTACAACAAAA
GCGTCGCGAACGCCATGTCCAACGCACAGCCCGAAAGGCGGAGACCAAAC
GGAGGATCACGATCAGCACCAGCAGCACCAGCAGCGAAAGCACCCAAGAG
CAAGAACAGCAGTAGCAGCGACAGGGAGAAGAGCGAGCCCGGGTGGGCCG
GAGCCGATCGCGTCGCAGGCTGGGGTCGAGGCGGAGGGCGTTCCAAAAAC
GGAGGCAGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:119842..123503-

>mRNA_P-littoralis_Contig90.25.1 ID=mRNA_P-littoralis_Contig90.25.1|Name=mRNA_P-littoralis_Contig90.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig90:119842..123503- (Pylaiella littoralis U1_48)
GAGAGGCAGGGGCAGAGGGAGGGGGAGACACCCCCGTCCTCCCTTGTTGC
TGGTGATTCTACTGCGGCAGCGGCGGCGGCGACAGGGCCCGCTGAGGGGG
TGCTGTTGATCAAGAGGTTGCAACCGCTGGCGGTGGTGAAAATATGCCTC
CGTCGGCTGGGTTTGGCGCACACCGGGGCCGAAGGCGAGACGGAGGTGCA
GGTGCAAGGGAGCGCCCAGCTTCAGAAGCTGGTCCGACAGGTGGTGGACC
ACAAGCGCGTCGCCACCGTCTTGAAAGAATTGCAAGAGAGAGTGACGATG
AGGAGGAGAGACAAGCTAGCGGAGTCGGAAGGACGGCCCTTGCAAGGCCA
AGGCCGGAGTGGCCGAGCCGCGAGGAGGAAGGGGAAGGGCAAGAGGGCGT
CCGCGGAAACAGACGGGCGACAGCAGGAGGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGCAAGAAGAAGACAGACTCTGCGCGCCGACAGCACGCCGC
TGCGGGCTCCGCTGGCTCCGCGTTCGTGTCGCTTTCGGGGGAACCTCCAA
GCAATGACGAGAAGGGCAGCGCTAGCAGGTGTGTACAGCAAAAAAACTAC
TACAACAAAAGCGTCGCGAACGCCATGTCCAACGCACAGCCCGAAAGGCG
GAGACCAAACGGAGGATCACGATCAGCACCAGCAGCACCAGCAGCGAAAG
CACCCAAGAGCAAGAACAGCAGTAGCAGCGACAGGGAGAAGAGCGAGCCC
GGGTGGGCCGGAGCCGATCGCGTCGCAGGCTGGGGTCGAGGCGGAGGGCG
TTCCAAAAACGGAGGCAGGGGG
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