mRNA_P-littoralis_Contig90.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.110.1
Unique NamemRNA_P-littoralis_Contig90.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:453410..454034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size589
Hectar predicted targeting categoryother localisation
Exons2
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791801.4879234-UTR-P-littoralis_Contig90:453409..4535841680791801.4879234-UTR-P-littoralis_Contig90:453409..453584Pylaiella littoralis U1_48UTRP-littoralis_Contig90 453410..453584 +
1680791801.5059881-UTR-P-littoralis_Contig90:453620..4536391680791801.5059881-UTR-P-littoralis_Contig90:453620..453639Pylaiella littoralis U1_48UTRP-littoralis_Contig90 453621..453639 +
1680791801.5364094-UTR-P-littoralis_Contig90:453951..4540341680791801.5364094-UTR-P-littoralis_Contig90:453951..454034Pylaiella littoralis U1_48UTRP-littoralis_Contig90 453952..454034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791801.5212042-CDS-P-littoralis_Contig90:453639..4539511680791801.5212042-CDS-P-littoralis_Contig90:453639..453951Pylaiella littoralis U1_48CDSP-littoralis_Contig90 453640..453951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.110.1prot_P-littoralis_Contig90.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 453640..453951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.110.1

>prot_P-littoralis_Contig90.110.1 ID=prot_P-littoralis_Contig90.110.1|Name=mRNA_P-littoralis_Contig90.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MFVRNLEFSHMTGNRIFYDFCDDVRICSERRKNRKKNGLVHRFGPSDRIE
QKGHILVCCGFFLNLFHTVLAFKICRDSCPEVLFPSFDISQVKVQLLCAH
AFH*
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mRNA from alignment at P-littoralis_Contig90:453410..454034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.110.1 ID=mRNA_P-littoralis_Contig90.110.1|Name=mRNA_P-littoralis_Contig90.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=625bp|location=Sequence derived from alignment at P-littoralis_Contig90:453410..454034+ (Pylaiella littoralis U1_48)
CAGTTGTCCCAGCTTGTGTGCCGGCTAGAAGAGGGTTGCGAGAGGGGTTT
AGTTGGTGAGGGGAGAAGTAGAGACGAATGAGCGGCTCACAGAGGGCTTG
CTTCGGCAGGTTCTGACTCGTCTTCACACTCTCTTCGCCAATCTCCGACC
ACACCTGCTGAAAGGCGAAAGCAGAGGCGGATTCGTTTGCCGTTATTTTT
TTCTCGGGTGCGCTGTCTGTCTGCACTGGTATGTTCGTTCGGAATCTGGA
ATTTTCCCACATGACAGGAAATCGTATTTTTTACGATTTTTGTGATGACG
TGCGGATTTGTTCCGAACGAAGAAAGAATCGGAAAAAAAATGGACTTGTT
CATCGTTTCGGGCCATCGGATCGCATCGAGCAGAAAGGTCACATTTTAGT
CTGTTGTGGTTTTTTCCTCAATCTTTTTCACACGGTGCTTGCCTTCAAAA
TTTGTCGCGATAGTTGTCCAGAAGTTCTCTTTCCCTCTTTTGATATCAGT
CAAGTCAAGGTTCAACTTCTTTGTGCCCATGCCTTCCATTGAAGTGTACA
ACATAGTTGAAGCTGCTGCTGTGTGTTGTGTGTGCGGAGGTCTACGTCTC
CGCGGCTTGTCGGTTAGCAGCCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:453410..454034+

>mRNA_P-littoralis_Contig90.110.1 ID=mRNA_P-littoralis_Contig90.110.1|Name=mRNA_P-littoralis_Contig90.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig90:453410..454034+ (Pylaiella littoralis U1_48)
ATGTTCGTTCGGAATCTGGAATTTTCCCACATGACAGGAAATCGTATTTT
TTACGATTTTTGTGATGACGTGCGGATTTGTTCCGAACGAAGAAAGAATC
GGAAAAAAAATGGACTTGTTCATCGTTTCGGGCCATCGGATCGCATCGAG
CAGAAAGGTCACATTTTAGTCTGTTGTGGTTTTTTCCTCAATCTTTTTCA
CACGGTGCTTGCCTTCAAAATTTGTCGCGATAGTTGTCCAGAAGTTCTCT
TTCCCTCTTTTGATATCAGTCAAGTCAAGGTTCAACTTCTTTGTGCCCAT
GCCTTCCATTGA
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