mRNA_P-littoralis_Contig90.151.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.151.1
Unique NamemRNA_P-littoralis_Contig90.151.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:584645..585774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size525
Hectar predicted targeting categoryother localisation
Exons2
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791801.3006938-CDS-P-littoralis_Contig90:584644..5847241680791801.3006938-CDS-P-littoralis_Contig90:584644..584724Pylaiella littoralis U1_48CDSP-littoralis_Contig90 584645..584724 -
1680791801.3129315-CDS-P-littoralis_Contig90:585331..5857581680791801.3129315-CDS-P-littoralis_Contig90:585331..585758Pylaiella littoralis U1_48CDSP-littoralis_Contig90 585332..585758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791801.3298297-UTR-P-littoralis_Contig90:585758..5857741680791801.3298297-UTR-P-littoralis_Contig90:585758..585774Pylaiella littoralis U1_48UTRP-littoralis_Contig90 585759..585774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.151.1prot_P-littoralis_Contig90.151.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 584645..585758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.151.1

>prot_P-littoralis_Contig90.151.1 ID=prot_P-littoralis_Contig90.151.1|Name=mRNA_P-littoralis_Contig90.151.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
MADPTGGGAAQPVSQPTEPSSRLIIGGVPVQVVGAGKGRSKQTSAIWKHV
VEFTPATASGKNIKCMVKHKLPAVNNVPAREVTCGFLMKYVRADASKGIS
SGGTNGMWKHFRDKHKHIREEEMPKSSHSTEGKKRKASLLAGVQQAQASA
GKGPMDKHMITSLGKAQQE
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mRNA from alignment at P-littoralis_Contig90:584645..585774-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.151.1 ID=mRNA_P-littoralis_Contig90.151.1|Name=mRNA_P-littoralis_Contig90.151.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1130bp|location=Sequence derived from alignment at P-littoralis_Contig90:584645..585774- (Pylaiella littoralis U1_48)
CACGAACACACACTCTATGGCGGACCCTACCGGCGGCGGCGCTGCCCAGC
CTGTGTCACAGCCAACAGAGCCATCCAGTCGGTTGATAATTGGCGGTGTT
CCCGTACAAGTGGTCGGTGCTGGGAAAGGGAGAAGCAAGCAGACCTCTGC
GATTTGGAAGCATGTCGTAGAGTTCACGCCAGCCACGGCAAGTGGCAAGA
ACATCAAGTGCATGGTCAAACACAAGCTTCCCGCGGTGAACAACGTTCCA
GCACGCGAAGTGACGTGCGGCTTCTTGATGAAGTACGTCCGAGCTGACGC
CAGCAAAGGGATCTCCAGCGGAGGGACGAACGGCATGTGGAAGCACTTCC
GCGACAAGCACAAACACATCCGCGAGGAAGAGATGCCAAAGAGCTCGCAC
AGCACCGAAGGGAAAAAGAGGAAGGCGAGCCTCCTTGCCGGAGGTAAGAG
TGCGAAGAGTGAGGGGCTACTGCAGTATCGCCTGCGTTAGCAGTGGTTGG
GTGTGATTTGTGTGGTGCTTTAGTTTGATGTGTACCACATGCGTCGCACA
CGCTGTGCGCTGTTTTGTTTTTTTTTGTAGACTTTGGACTTTTCAAACTT
TTGACCGATCATACGGAAGACAACACCCCCAAAAGACATTTGTTTTTTTT
AAACTCACTTGCTTGTTGCTCTCAAAACACCGATCTTGGACGTTTTTGAG
TTAGAGTCTGGACTATGCGTACACAACAACCTCCTGGAACACCCTAACGC
TGTTTCACATTTTAGATTTTAGCGTTTTTTGGTTGAACGCAGATATATAG
ATAAACTTAAATATTTTTATATTTTTACTGTTTATTTTGTACCGGTTTTG
TATTTTGTTTCCCACGGTAGTTATGTGTTGCGGCCTGTGCATTTTTTATC
ATTTTTTAACACTTCATTGCTACCTGTACTTGTATCACTTTTCATTTTGT
GTTAAATTCAAGCCCGTGCTGACCACACACCGTGTTGGTTCTCTCTCGCT
CTCTTGTCTCTTTCAACCCTTTCCCCGCCTCCCTGTCTTGTGTGGATCAG
TCCAGCAAGCACAAGCGAGCGCAGGCAAAGGGCCGATGGACAAACACATG
ATCACTTCGCTTGGCAAGGCCCAACAAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:584645..585774-

>mRNA_P-littoralis_Contig90.151.1 ID=mRNA_P-littoralis_Contig90.151.1|Name=mRNA_P-littoralis_Contig90.151.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig90:584645..585774- (Pylaiella littoralis U1_48)
ATGGCGGACCCTACCGGCGGCGGCGCTGCCCAGCCTGTGTCACAGCCAAC
AGAGCCATCCAGTCGGTTGATAATTGGCGGTGTTCCCGTACAAGTGGTCG
GTGCTGGGAAAGGGAGAAGCAAGCAGACCTCTGCGATTTGGAAGCATGTC
GTAGAGTTCACGCCAGCCACGGCAAGTGGCAAGAACATCAAGTGCATGGT
CAAACACAAGCTTCCCGCGGTGAACAACGTTCCAGCACGCGAAGTGACGT
GCGGCTTCTTGATGAAGTACGTCCGAGCTGACGCCAGCAAAGGGATCTCC
AGCGGAGGGACGAACGGCATGTGGAAGCACTTCCGCGACAAGCACAAACA
CATCCGCGAGGAAGAGATGCCAAAGAGCTCGCACAGCACCGAAGGGAAAA
AGAGGAAGGCGAGCCTCCTTGCCGGAGTCCAGCAAGCACAAGCGAGCGCA
GGCAAAGGGCCGATGGACAAACACATGATCACTTCGCTTGGCAAGGCCCA
ACAAGAA
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