mRNA_P-littoralis_Contig90.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.26.1
Unique NamemRNA_P-littoralis_Contig90.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.26.1 vs. uniprot
Match: A0A6H5K792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K792_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.500e-16
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:   67 AMKRKRSGQEYDEDEKLLHQATKALTKEAKRVKTFLLQQAIRKSRAAADKKK 222
            AMKRKR+GQ YD+DEKL HQATKALTKEAKRVKTFLLQQAIR+S+AAA+K+K
Sbjct:    3 AMKRKRAGQGYDDDEKLRHQATKALTKEAKRVKTFLLQQAIRRSKAAAEKEK 54
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K792_9PHAE5.500e-1684.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:123578..125674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size381
Hectar predicted targeting categorysignal peptide
Exons2
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791801.044544-CDS-P-littoralis_Contig90:123578..1238301680791801.044544-CDS-P-littoralis_Contig90:123578..123830Pylaiella littoralis U1_48CDSP-littoralis_Contig90 123579..123830 -
1680791801.059201-CDS-P-littoralis_Contig90:125548..1256741680791801.059201-CDS-P-littoralis_Contig90:125548..125674Pylaiella littoralis U1_48CDSP-littoralis_Contig90 125549..125674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.26.1prot_P-littoralis_Contig90.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 123579..125674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.26.1

>prot_P-littoralis_Contig90.26.1 ID=prot_P-littoralis_Contig90.26.1|Name=mRNA_P-littoralis_Contig90.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
HTIPALFLAATSLLGCVRAPISAMKRKRSGQEYDEDEKLLHQATKALTKE
AKRVKTFLLQQAIRKSRAAADKKKKNNNHENKNKNCTKNCNKNGEGPLGR
LSDENITTATDTEEVPLEEEKEKGEG
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mRNA from alignment at P-littoralis_Contig90:123578..125674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.26.1 ID=mRNA_P-littoralis_Contig90.26.1|Name=mRNA_P-littoralis_Contig90.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2097bp|location=Sequence derived from alignment at P-littoralis_Contig90:123578..125674- (Pylaiella littoralis U1_48)
CATACCATCCCCGCCCTCTTTCTAGCCGCTACAAGCCTCCTCGGGTGTGT
GCGCGCGCCGATCTCCGCCATGAAGCGGAAGAGGTCTGGCCAAGAGTACG
ACGAGGATGAGAAGCTACTGCATCAGGTACGAATATGTAGGTCGATCCAT
ATTTTTCACACACACGTCCTCCGACGGCAACGCCAAACCTCAAAGTCCAA
CAATATGATACGCAGCAGCAAAGTATATCTACGCCAGCATGTTGTATCTT
TATCTAGTGACCTGGGTGCCATCGCTAGCAGAAAATCAACGAAATTCCTC
TCTTCTTCTAAACACGCTGTGTCGGGGGGTCAACCATGACCATATCACTG
ATTTGGGCTGAGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCTTGCAG
CACAACGCGCCAGATCAATATTGCCGAAGCCCCAGACAGAGAGCATGAGC
ATCGGTGTTGGTAGCAGCAGAAACTAGCAGCAGCACAAGCAGTAGCAGCA
GCAGCAGCAATACTTCAGCTGCAATGTGTGTCACCATCCGTATAGATAAC
ATGACGGGGTCCAACTTTTTCTCATTCATAACATGATACTTGTATAGCAT
ATACTCGGAGTATAATCTACCGGCGTTGTTCTGTAGGTTGCATCAGAAAG
CACACCGCGGTGACCACATTTTTGGATTAAAAGGAACGCATCACTAGTGG
TGCTGTTCTGCAAAGGTGTGCTCTCTTGTATCACCCGCGTGCAGTGCAGT
TCACAGGAGCCCAGTTACAGGGTGCGTGATGACACGGGGGGGCGATAGCA
TGGGGGGTTGGTGTATTTGGGTGGCAAATGGCACACTTCTTTCGAGTGAT
GGCAAGGGAGTGTCGTGTCTCTGCTGGCCGGCATTTGGCGGAGGAAACTG
CTCACAACCACACCATTTCAAACTTGTACAGCAGTGTGAAAAGGGGCGGT
TGTGAGCATTGCTTCGTAGATGAGAACGTAGTAACTTCTCATCATTCACA
AGGGAAACCCTTCGTTCATCTACTTGATATGATATCACAGGACAGCGACG
ATGCAGGCGATCTTTAAATAATTCACATGGCTACAGGAACACCCATGTCC
TCTCACCTTGCCTTGCACCAGCTGTGTGCGATCATCTAAAATGGGTTACA
CACCGCATGTATTGTTGTCACACGCCAGGCTTTTATCACGCGTGTGGTAT
CTGTCATCCGTGAGATAAATCGCGTATTTTCGGGGTTCGACAAAACTATC
ACATGTGTACATATGTGTTCTGCAATTTTCGCTAGGGTATGATATGTGAT
TTCTCAGTAAAGGGCACAATCTCATGCAACCTATCATGCGGCATACACGT
ACAGTAGAATAAACTCCCATGTGACCCGGTTGATGCACCGGCGTATACCG
AAAGGTGTGGACTGGCGCCCAGAATAGATGGGGCGAAACAAACACATACA
CACACACATGGCCATTCCCAACAACCCCCCGTAGAGCAGTGGGCGCCCGT
TAGGCGCATGATACCAGTGCGCGTGAAGCACCGATGGAGGCCACGCTATT
GTGTCGTTCGTTCACCTGGTGGACCGCACAACAAACGGTCAAGACCGGAT
AGCAGCCAACTGCTCCACGAAACCTCCAGACGCCTCACCCCATTAGCACT
CGCCTTCAAGGCACACGGTACATACATTTGTCTGTCTTTCCTTCACACGC
TGCTGGCTGGCTGGCTCAACTCAAACTTCTTGCGACCCCTATCCCCCCCC
TCCCCCTTCAACGCCCATCCATCCGCTCTTTTTTTTTTCATGTTGACACG
GGTGAAACGAAAAACATGTGCACAACATGCCTGAACACGGTAAGGCAACG
AAGGCCCTGACGAAGGAGGCCAAGCGCGTCAAGACCTTTCTGCTCCAGCA
AGCCATCCGCAAGAGCAGGGCCGCAGCAGACAAGAAGAAGAAGAACAACA
ACCACGAGAACAAGAACAAGAATTGCACCAAGAATTGCAACAAGAATGGG
GAGGGACCGCTGGGACGGCTCTCAGATGAGAATATCACTACTGCCACGGA
TACCGAGGAAGTACCTCTAGAGGAGGAGAAGGAGAAGGGGGAGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:123578..125674-

>mRNA_P-littoralis_Contig90.26.1 ID=mRNA_P-littoralis_Contig90.26.1|Name=mRNA_P-littoralis_Contig90.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig90:123578..125674- (Pylaiella littoralis U1_48)
CATACCATCCCCGCCCTCTTTCTAGCCGCTACAAGCCTCCTCGGGTGTGT
GCGCGCGCCGATCTCCGCCATGAAGCGGAAGAGGTCTGGCCAAGAGTACG
ACGAGGATGAGAAGCTACTGCATCAGGCAACGAAGGCCCTGACGAAGGAG
GCCAAGCGCGTCAAGACCTTTCTGCTCCAGCAAGCCATCCGCAAGAGCAG
GGCCGCAGCAGACAAGAAGAAGAAGAACAACAACCACGAGAACAAGAACA
AGAATTGCACCAAGAATTGCAACAAGAATGGGGAGGGACCGCTGGGACGG
CTCTCAGATGAGAATATCACTACTGCCACGGATACCGAGGAAGTACCTCT
AGAGGAGGAGAAGGAGAAGGGGGAGGGG
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