mRNA_P-littoralis_Contig9.243.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig9.243.1
Unique NamemRNA_P-littoralis_Contig9.243.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig9.243.1 vs. uniprot
Match: D7FRM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRM1_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 8.000e-46
Identity = 121/236 (51.27%), Postives = 148/236 (62.71%), Query Frame = 1 
Query:  886 KRLILPPLSSEQGLSCTGVGKKKPSLVPWRQRKFVGRNGFRGGSSTTSSKHNKTASACHESSLVKNKSSAPSLRTPETSRPSTTSSTNTACEAAPSSS-----------GVYQGPLKARLRVMEWKRRQSEELKTQQEEQATLEQKNKLEANTEAARKLAAARAEEVERRFILERESTADALRAGEAAEKWAKTSRQRQQRRAEIYAINALMRTAFEREFEAYSLERAGRTTQAAA 1560
            +R +LP LS EQ L+  GVGK K  L P  +RK      FR  S   SS   K AS+  E SL + +S+     TP+ SRPSTTS+TNTA E  PSS            G  Q  LKARLRVMEWKRR++EEL++QQEEQAT E                   AEE ERR + E  ++ADA+RA EAAE+WAK SR+R++RRAEIYAINA+MR AFE+EF+AYSLE+  R TQA+A
Sbjct:   81 RRSVLPLLSPEQELTGKGVGKLKQRLAPLHRRKSDVDGRFRRRSRNLSSAQRKPASSGQEPSLARRRST-----TPDASRPSTTSNTNTAREGVPSSRTSFSSETATDPGADQAQLKARLRVMEWKRRRAEELESQQEEQATQEHXXXXXXXXXXXXXXXXXXAEEAERRILAEHNNSADAVRASEAAERWAKASRERERRRAEIYAINAVMRAAFEKEFKAYSLEQENRVTQASA 311
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig9.243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM1_ECTSI8.000e-4651.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig9contigP-littoralis_Contig9:898207..901894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1560
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002530.1
Cds size1560
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791797.3919454-CDS-P-littoralis_Contig9:898206..8982651680791797.3919454-CDS-P-littoralis_Contig9:898206..898265Pylaiella littoralis U1_48CDSP-littoralis_Contig9 898207..898265 +
1680791797.406265-CDS-P-littoralis_Contig9:898669..8995051680791797.406265-CDS-P-littoralis_Contig9:898669..899505Pylaiella littoralis U1_48CDSP-littoralis_Contig9 898670..899505 +
1680791797.4164567-CDS-P-littoralis_Contig9:899995..9003031680791797.4164567-CDS-P-littoralis_Contig9:899995..900303Pylaiella littoralis U1_48CDSP-littoralis_Contig9 899996..900303 +
1680791797.4316974-CDS-P-littoralis_Contig9:900710..9009971680791797.4316974-CDS-P-littoralis_Contig9:900710..900997Pylaiella littoralis U1_48CDSP-littoralis_Contig9 900711..900997 +
1680791797.4449005-CDS-P-littoralis_Contig9:901824..9018941680791797.4449005-CDS-P-littoralis_Contig9:901824..901894Pylaiella littoralis U1_48CDSP-littoralis_Contig9 901825..901894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig9.243.1prot_P-littoralis_Contig9.243.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig9 898207..901894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig9.243.1

>prot_P-littoralis_Contig9.243.1 ID=prot_P-littoralis_Contig9.243.1|Name=mRNA_P-littoralis_Contig9.243.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=520bp
MTLISLRWSSASSQVCRVTDSAAAAADTSRPRLMSKTTPPASRQEKPLGM
STSRWRLAKSICVSGSKPAFSPNPPPQLQLQGGCQAHQSVDQQDSAGSRS
NDVSRGPAVVDSTTGTKARNILNVPALPLNVERQNQVSYVPSEQDATSST
VKVEATAREKKNTAEVGGNGSGGIVLRRLLTDGCSDLGQDEALPRSGSAP
SPLAMPLANFSGTDFSPSRQPADAGWALLGGRSKVDCSPFKPEESLAQAT
RSCWDERKDATGVSVDAVTPPQDGAASTGPTSKVASEAELKQPSLKRLIL
PPLSSEQGLSCTGVGKKKPSLVPWRQRKFVGRNGFRGGSSTTSSKHNKTA
SACHESSLVKNKSSAPSLRTPETSRPSTTSSTNTACEAAPSSSGVYQGPL
KARLRVMEWKRRQSEELKTQQEEQATLEQKNKLEANTEAARKLAAARAEE
VERRFILERESTADALRAGEAAEKWAKTSRQRQQRRAEIYAINALMRTAF
EREFEAYSLERAGRTTQAAA
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mRNA from alignment at P-littoralis_Contig9:898207..901894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig9.243.1 ID=mRNA_P-littoralis_Contig9.243.1|Name=mRNA_P-littoralis_Contig9.243.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3688bp|location=Sequence derived from alignment at P-littoralis_Contig9:898207..901894+ (Pylaiella littoralis U1_48)
ATGACTTTGATAAGTCTCAGGTGGTCTTCGGCTTCGAGTCAGGTGTGCCG
AGTCACCGAGTCCCCAAAGGAAGCTTGTAAAGGTACGGGTACGATATCAT
AAAACTCCGAAGGACAAGCTGAGACGCACTGCGGTGCAAACTTAAAGCAC
AGAGTTTGAGAAATCTCAGTGCTGTGCATCAAGGAGAGTTTGGAAAGGCC
AGCAGCGTAAACCATTTCCGATCCCTGGGAGTTAACATGTAAAAAGCGGG
GTTGTGACGTCTGTATGTTTTTACCCTTGGGAGAAGAGAACATACCTTGG
AGTATACGAGTATACCGTATGTACACCGCTCGCTGGAATGGTCTACTACT
GTAAAGAATTATTGTGGTTTTGCCGCCATCCGCTCCAACATTGCTACTGA
CTGCGTCTTCTTCGCCACCACCGCCGCCACCACCACCACCAGCGGCAGCG
GCAGCGGCAGCAGCTCGGCAGCAGCAGCAGCTGATACCTCGAGACCGCGA
TTAATGTCCAAGACGACCCCCCCGGCATCACGGCAGGAGAAGCCGCTAGG
TATGAGCACTAGTAGGTGGAGGTTGGCCAAGAGTATTTGCGTCTCTGGCT
CAAAGCCAGCCTTTTCACCCAATCCACCACCACAGCTGCAATTACAAGGA
GGGTGTCAAGCCCACCAGAGTGTGGACCAGCAGGACTCTGCGGGTTCGAG
GAGCAACGATGTAAGCAGAGGGCCCGCAGTGGTTGATTCTACCACCGGGA
CCAAAGCTCGGAATATCCTGAACGTCCCAGCGCTGCCGTTAAATGTTGAG
CGACAGAATCAAGTATCGTACGTGCCATCTGAGCAAGACGCGACGTCGTC
AACCGTGAAGGTGGAAGCCACCGCTCGAGAAAAAAAAAACACGGCTGAGG
TTGGCGGCAACGGTAGCGGTGGCATCGTTCTTCGTCGTTTATTGACGGAT
GGCTGCTCCGACCTTGGGCAAGATGAGGCGTTACCGAGATCTGGTTCGGC
ACCTTCTCCTTTGGCAATGCCGCTTGCAAACTTTTCTGGTACAGATTTTT
CGCCTTCACGACAACCAGCAGACGCTGGGTGGGCCCTGCTTGGTGGGCGC
AGCAAGGTTGATTGCTCCCCATTCAAACCCGAGGAGAGCCTCGCGCAAGC
GACTCGAAGTTGTTGGGACGAGAGAAAAGACGCTACAGGTGTCTCGGTTG
ACGCTGTAACTCCTCCGCAAGACGGCGCGGCATCTACCGGGCCAACGTCT
AAAGTGGCCTCGGAAGCCGAGCTGAAACAACCTTCACTGAAGCGGTTAAG
TTCGAGCAATAGTTCACGTAAGCTGTGCTTTAGTAGTACCATACTCCGGT
CTCGCGGACAATATAATGTACCCTCGATGCCCCACTGGTGGCGGTATCGC
CTCCCAGAGTGTTGGTAGCATTTCGGGGGTCAAATTGGCACTGCTTCCAA
CGAACTCAAAAGCATGTCTAAAGGCCCATTTTAAATACTTATCGCCGACC
TATCTACATGTCTCTACTTATCTACGAAGCAACAATTATTCGCGCACATG
AAGCTTACCCGAGCTTGAAGTTGACCTACCGTACTGTAGCCTGCGCCCCT
TTGCTCCTTATGCTGCGATACGCCTTAGAACCGCGCGATTGATTTTCTGT
ACAAACTGAAGGGCCGGCTTTGCAGGGAGATACAGCAAAAGTTCGTTAAC
ACCGCTCCCGTTCCTGATAGTATTGCTGACAATTACGTCATACGACAACC
AAATACGCCCATCGTTACTGTGTGTTCGCGTCGTGTCAGTTCTACCGCCA
CTCTCGTCAGAACAAGGTCTTTCTTGCACGGGTGTGGGGAAGAAAAAGCC
GAGCTTGGTACCGTGGCGCCAAAGGAAATTTGTTGGTAGGAATGGCTTTC
GTGGCGGATCTAGTACTACGAGTAGCAAGCACAACAAGACAGCCTCAGCG
TGTCACGAATCGAGCCTTGTGAAAAATAAAAGCAGTGCCCCAAGCCTCAG
GACCCCGGAGACGTCTCGACCAAGCACCACCAGCAGTACGAACACGGCAT
GTGAAGCGGCACCCAGCAGCTCAGGGGTATATCAGGGACCACTGAAGGTG
TATCACTCTCGAAAATAACTGCAACTGGTTGAAGAGACTGACGGACCTTC
ATTCTCGCGAGAATAGCCTGCTGCATTTCAGTCGCACATTCAGTAGCACA
GGCAATACTACGCCCACGTAGCAGTGTAGACAGTTTATTTTTGTTTTCTG
TATGCCCAACACCAATGCTGCTGGAGCTGTGGCAAATATCAGTCTTCTCT
TGGAGGTTAGAGGTTCGGTCAAAGGTTACAGGATCCAACAACCGAAGAGG
GTGAACCTCCCCTGCCTGGTGAAGAAGTTTTATGTCGCCGGAACTTTAAC
GAACCCGCCGCCGCATGCGACCGTTGCTGTCGCCGCGGTACCGAGGAATG
TACCGCTTTTCTTCAACAATATACCGTATTTATATCCCTGCTACCCTCAA
AAAGGCACGATTGCGGGTAATGGAGTGGAAACGAAGGCAATCAGAAGAAC
TGAAGACGCAGCAGGAAGAGCAGGCTACCTTGGAACAGAAGAATAAGCTA
GAAGCGAACACGGAGGCTGCCAGAAAATTAGCAGCCGCGAGAGCCGAAGA
GGTCGAGCGGCGATTCATCCTTGAGCGTGAGAGTACGGCGGATGCCCTTC
GAGCGGGAGAAGCCGCAGAGAAGTGGGCAAAAACGTCGCGTCAACGACAA
CAAAGGAGGGCAGAGATATATGCTATCAATGCACTCATGAGGTAGGATGA
GCAATACGCTGATTGGAGGACACGTGTTAGGCTAGGACCATGTTCAGCGT
CACAGAGGGTTGCTGAGACTTTTGCGTTCACCCCACCAGGTGTGACAGGT
ATGACTGTTTTGGGTCGGAAGTCCGTGTTTCTGAATCATTGTTGGCGGTG
GTTTTCGCAAATATTTGGCGTTGAGTCGCTGACGTTCGCCACTGCGCACG
CGAACGGGACATCGCCGTGGATGACGATTTTTGTCTTCGCGTTAATGCCT
TGTCCCGACTTCCATCCAGTATGTCCAAATTCCGTGCTGTTCAAACTAGT
AAAATAGTTTCCTTCGGTCATGCGCTATTATAGCATCATTAAAACACAGA
CGAAAAACAACAAAAGACCCCATCAAAATTTCATCGATCGCAAAGAAGAG
ATCGGCAACAAGATGAATTCCAGAATTCGTAGGCCGAAAAGAGTCAACTA
CCAAAAAATAGCGATCCCGAGGAAACTGAATACGGAAAGAAACATGCTCC
CACACACACTAACACTTTCACCTGGGAAATGCCGCAATGCAGCCGCGAAC
ACAAAGGAAGACGAAAGGGTAGAACGAAAGGACGCTTCTTCTCATTTCAC
GGTAAGATTTTCACCCACTCCAATATTAGCGTCCGCCAGGGATAATCCAA
GAACCAAACTCTGTGTTCCCGGCAAGATTCTTCCTGGTTTGTTCTGATCA
CATATTGTTGTCGGAAACATGTGGATGTATATTGTGTCGTCGTGCTGGTG
CAGCAAGTCTGAAGGTAACCACCCTGTGCCTCGCGTGTGCACTCCGCACT
GGTTGGATCGAATTCCAGGACAGCTTTTGAAAGAGAGTTTGAGGCGTACA
GCTTGGAACGAGCAGGACGTACGACACAGGCAGCAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig9:898207..901894+

>mRNA_P-littoralis_Contig9.243.1 ID=mRNA_P-littoralis_Contig9.243.1|Name=mRNA_P-littoralis_Contig9.243.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1560bp|location=Sequence derived from alignment at P-littoralis_Contig9:898207..901894+ (Pylaiella littoralis U1_48)
ATGACTTTGATAAGTCTCAGGTGGTCTTCGGCTTCGAGTCAGGTGTGCCG
AGTCACCGACTCGGCAGCAGCAGCAGCTGATACCTCGAGACCGCGATTAA
TGTCCAAGACGACCCCCCCGGCATCACGGCAGGAGAAGCCGCTAGGTATG
AGCACTAGTAGGTGGAGGTTGGCCAAGAGTATTTGCGTCTCTGGCTCAAA
GCCAGCCTTTTCACCCAATCCACCACCACAGCTGCAATTACAAGGAGGGT
GTCAAGCCCACCAGAGTGTGGACCAGCAGGACTCTGCGGGTTCGAGGAGC
AACGATGTAAGCAGAGGGCCCGCAGTGGTTGATTCTACCACCGGGACCAA
AGCTCGGAATATCCTGAACGTCCCAGCGCTGCCGTTAAATGTTGAGCGAC
AGAATCAAGTATCGTACGTGCCATCTGAGCAAGACGCGACGTCGTCAACC
GTGAAGGTGGAAGCCACCGCTCGAGAAAAAAAAAACACGGCTGAGGTTGG
CGGCAACGGTAGCGGTGGCATCGTTCTTCGTCGTTTATTGACGGATGGCT
GCTCCGACCTTGGGCAAGATGAGGCGTTACCGAGATCTGGTTCGGCACCT
TCTCCTTTGGCAATGCCGCTTGCAAACTTTTCTGGTACAGATTTTTCGCC
TTCACGACAACCAGCAGACGCTGGGTGGGCCCTGCTTGGTGGGCGCAGCA
AGGTTGATTGCTCCCCATTCAAACCCGAGGAGAGCCTCGCGCAAGCGACT
CGAAGTTGTTGGGACGAGAGAAAAGACGCTACAGGTGTCTCGGTTGACGC
TGTAACTCCTCCGCAAGACGGCGCGGCATCTACCGGGCCAACGTCTAAAG
TGGCCTCGGAAGCCGAGCTGAAACAACCTTCACTGAAGCGGTTAATTCTA
CCGCCACTCTCGTCAGAACAAGGTCTTTCTTGCACGGGTGTGGGGAAGAA
AAAGCCGAGCTTGGTACCGTGGCGCCAAAGGAAATTTGTTGGTAGGAATG
GCTTTCGTGGCGGATCTAGTACTACGAGTAGCAAGCACAACAAGACAGCC
TCAGCGTGTCACGAATCGAGCCTTGTGAAAAATAAAAGCAGTGCCCCAAG
CCTCAGGACCCCGGAGACGTCTCGACCAAGCACCACCAGCAGTACGAACA
CGGCATGTGAAGCGGCACCCAGCAGCTCAGGGGTATATCAGGGACCACTG
AAGGCACGATTGCGGGTAATGGAGTGGAAACGAAGGCAATCAGAAGAACT
GAAGACGCAGCAGGAAGAGCAGGCTACCTTGGAACAGAAGAATAAGCTAG
AAGCGAACACGGAGGCTGCCAGAAAATTAGCAGCCGCGAGAGCCGAAGAG
GTCGAGCGGCGATTCATCCTTGAGCGTGAGAGTACGGCGGATGCCCTTCG
AGCGGGAGAAGCCGCAGAGAAGTGGGCAAAAACGTCGCGTCAACGACAAC
AAAGGAGGGCAGAGATATATGCTATCAATGCACTCATGAGGACAGCTTTT
GAAAGAGAGTTTGAGGCGTACAGCTTGGAACGAGCAGGACGTACGACACA
GGCAGCAGCC
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