mRNA_P-littoralis_Contig9.117.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig9.117.1
Unique NamemRNA_P-littoralis_Contig9.117.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig9.117.1 vs. uniprot
Match: D7FKG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG2_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.470e-43
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 2 
Query:  305 MPNEYDAFFNKASRLGADATRGLTPEERAQRALEGEKLEDDIIEIATVLREKADAMVAETGAINFEVIQPMIDEIAVLKSKYKVVMGASET 577
            MPNEY+AFFNKASRLGADATR L PEERAQRA+EGEKLED+IIEIATVLREKAD MVAETGAINFE+IQPMIDEIAVLKSKYKVVMGA+ET
Sbjct:    1 MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATET 91
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BLAST of mRNA_P-littoralis_Contig9.117.1 vs. uniprot
Match: A0A835YIM3_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.010e-9
Identity = 31/65 (47.69%), Postives = 51/65 (78.46%), Query Frame = 2 
Query:  371 LTPEERAQRALEGEKLEDDIIEIATVLREKADAMVAETGAINFEVIQPMIDEIAVLKSKYKVVMG 565
            ++ EER + A+ GE+LED+I+  AT LR+ AD+MV +TGA++ + ++P+IDEI  LK++Y+ V+G
Sbjct:    1 MSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLG 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig9.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKG2_ECTSI1.470e-4391.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YIM3_9STRA3.010e-947.69Uncharacterized protein n=3 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig9contigP-littoralis_Contig9:450590..455460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1912
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002180.1
Cds size651
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791792.254238-UTR-P-littoralis_Contig9:450589..4505961680791792.254238-UTR-P-littoralis_Contig9:450589..450596Pylaiella littoralis U1_48UTRP-littoralis_Contig9 450590..450596 +
1680791792.3118858-UTR-P-littoralis_Contig9:454206..4554601680791792.3118858-UTR-P-littoralis_Contig9:454206..455460Pylaiella littoralis U1_48UTRP-littoralis_Contig9 454207..455460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791792.2784762-CDS-P-littoralis_Contig9:450596..4509951680791792.2784762-CDS-P-littoralis_Contig9:450596..450995Pylaiella littoralis U1_48CDSP-littoralis_Contig9 450597..450995 +
1680791792.288766-CDS-P-littoralis_Contig9:453028..4531741680791792.288766-CDS-P-littoralis_Contig9:453028..453174Pylaiella littoralis U1_48CDSP-littoralis_Contig9 453029..453174 +
1680791792.3014405-CDS-P-littoralis_Contig9:454100..4542061680791792.3014405-CDS-P-littoralis_Contig9:454100..454206Pylaiella littoralis U1_48CDSP-littoralis_Contig9 454101..454206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig9.117.1prot_P-littoralis_Contig9.117.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig9 450597..454206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig9.117.1

>prot_P-littoralis_Contig9.117.1 ID=prot_P-littoralis_Contig9.117.1|Name=mRNA_P-littoralis_Contig9.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=217bp
MSLSHRAGTTMLRPSMYFQTLLHVTLLSGMVHAFFRGCISFRHKTCQQYR
HHTYSSAAAAAAAATLSRRSGSSTDATTGRWISGLQLRPSVSSKHQLRLM
PNEYDAFFNKASRLGADATRGLTPEERAQRALEGEKLEDDIIEIATVLRE
KADAMVAETGAINFEVIQPMIDEIAVLKSKYKVVMGASETTSATTDGDDS
SGGAATDGDQEGSRAS*
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mRNA from alignment at P-littoralis_Contig9:450590..455460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig9.117.1 ID=mRNA_P-littoralis_Contig9.117.1|Name=mRNA_P-littoralis_Contig9.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4871bp|location=Sequence derived from alignment at P-littoralis_Contig9:450590..455460+ (Pylaiella littoralis U1_48)
GTACGTAATGTCGCTATCTCACCGTGCAGGTACAACAATGCTACGACCAT
CGATGTATTTTCAAACACTGCTCCACGTCACCCTCCTTTCTGGGATGGTT
CACGCCTTTTTTAGAGGATGTATCTCTTTCAGGCACAAGACATGTCAACA
ATATCGACATCACACCTACTCCTCTGCCGCTGCTGCTGCTGCTGCTGCTA
CATTGTCACGACGATCTGGCAGCTCTACTGACGCGACTACCGGTAGGTGG
ATTTCAGGGTTGCAACTGCGGCCATCTGTATCGTCCAAGCATCAGCTCCG
TCTCATGCCCAACGAGTACGACGCGTTCTTCAACAAGGCTTCGAGGTTGG
GGGCAGACGCGACTAGGGGTCTGACCCCGGAGGAACGCGCCCAGAGAGCG
TTGGAGGCAAGTTGAACGTGTGAAGGCGCAGATATCATAGCAGCCATCTT
TGCAACATGATGATGTCTTTCGCAGCAGCAAGCGAGCACAAGCAAGATTC
GTCGTGTATGATATAGCGCTGCCTGCCGGCTGCTGTCTTTTCAGAGGCAT
TGCGCGGAATTTGTGTTGAACACAAGGGAGTCAGTTTGCTGTGGCACAGT
CGCGCCTGGTGTTTGTGGGTCTCAAGTCTGAAGGCCCAGGGCACAAAGCC
CTCGCTGTTTTTTTTTTTTTCGTGATTATGAAACAAGTCATCTTCGTTTT
CTCCCGGTTTCCCTCGTTCATATTTACATACCTGGTACTTCAGTACAGTA
TTATACTCGTACAAACACCCCTCTTCTTCTGCTCCTGACGTCTAAGGTAC
AGTAGGTATATACGTGCGTAGCACACAGTTATTTTTTGTCTCGGCAACTC
GGACTGAAGGAGCTCCCAAACACGACGCTACAGGCCTATCAAACCAGTGT
GAAAGAGCCTTAGAGCCGCAACAAAGTTTGGAGAAAACAACGTGGTTGGG
GCGTTCTCGTGAAAAAAAATGTCGTTCCGAACTCCGCATTATTTTCGGCG
AATCTACTCCAAGAAAACCAAGATGATTAGCTCCCTCTCTAAATCCAAGA
TAAAACAGCAAGCACAGTATGACGCTCAAAATGGCCCCCACGTGCGCAAA
TTCCCGGATGCGCACCTGAAACAGGAGACATCATGTGTAGCGGCCACGCT
CCGACCTTCTGCTGGGGTTGTGATGTTGGTAGTCGTAGATATAAAGTCCA
GAAACCGTCCGCATTTCAGCCTGAATGCACCAACACGCAGGTCACCGCTA
CATTTTTTCTTCTGCTTGCTGCATGTCATGCGCGCATCCGTGAATACCGT
GAAAACTTTGGTGTTATTGTATTTTTCTCAAAACATACACGGGAAGGTCG
ATTTCTGAGAAGCAATCTCTTGAAAAATCACACAAAAAAACGCCACGCCT
GCTGGACCAGACCCGTGAGGGAAATGGTGACACCCGGATTGTAGAACCAT
TTTGGACAATCTAACCAACAATCGCTTGTTGGCACAAAATACACGCTGCT
GTATTTCGTTTTATAAAGTTTTACTGACGGGCTGGGAATTTGCAGCTGAT
CTGCATTCCAAGTGAAGCGTTGTGAATGGAAACCCCGAGGTAAGTGTTAG
CCATCCGCTGGCATGTGTGTGTGGGTGTGCCCCTGGTTTGCCCATGCAGC
AGCTTCTACTTGTTGTGCGTGCGTTTTGTCGATGTTTCCGGACGAAATGC
GCCGAACGGTTGGTCGCCTTCAATTCATAGCACCAACTCCTTTTTCCGAT
TCGCCGAATCCCAGAAATCAACCTCCCGAAAGTCTTTTTGGAGGCGAAAG
CTAGCCCCGTGGGATGCAAAAGCTAGCTCCGTACTTGTAGATGCAGTTTG
TGCCTTTGACCAATCAGAGGTAATTTTAGTTCCGATTGGCTTTCCGATCC
AGGCGTAACAGTATGTGAAATAGGCCCACACACAACGGTACGCGGCAGTT
ATCACCACCACTCAGCTGTACCATATATACTGGCACTCTCGAGTAAAGCC
GTAATCCGTTTCCTTGAAACAAACGGCGACGAAAAGACATGCACACCACG
GGGGTGATGCACCTGTCCAACAACACAATGAGTGGCAGCAACCGCTACTC
TGCACACACTCGTCACTTCACTTGAGGGCGAATGGCGAATCTTTAAAACA
ACGGGAAAAACTTGCGACATGTCAATCTACAGGACCTGAAACTTGAAATC
CTTTTGGTACCATACCATACATCATACGCCCACAGAGTCTACGGCGCGTG
TTCTGCCCCGAGGCCAAGCCACGACACACGCGCGTATCACACCGCAGGGT
CCGTCTGAAAGCATCCCGGTAGACCTTCCGCAGCTGTTTGCGGTGCCATG
CATGGACTTTTATCACACTGCATACCGCTGCGAGGCAAACCTGTTTTCTG
CGATGCACTGCTGTTGGTGCCTACCGGGTGCTGCTGCAGGGGGAGAAGCT
GGAAGACGACATAATCGAGATCGCGACCGTCTTGCGAGAAAAGGCGGACG
CAATGGTTGCGGAAACGGGCGCGATCAACTTCGAAGTTATCCAGCCGATG
ATCGACGAGATCGCCGTCCTAAAGAGCAAGTACAAGTGAGTCACATCACG
TGCTTCATACGGTAGGCAGTGTGATGTGATAGTCTTTGCACGCAGGAGAA
TGTGAATACAACAAAATATAAGATTAAGAAAGGCCAAAAAAAAAAAGTGC
GTATTACATCGCTGTATGAATTGAGCACTCTGCAGACGTTTTTTGAATGG
TCAAGACGGCTGTCAGTACGCGTGCAACACGTTTAGAGGCGTGACACCAC
CACGTCACGATATGCTAAACGCACATGCGTTGCGGTGAACACCACATTAT
CGTAGACGCCCCCCCCCCTTCCCAACGTTTGTTCATCGCGAACGATTCCG
ATTGGCCGAACGATCCCATTTTTCGCCATTGCCCCTCTTGCTTTCACGGA
ACGGCACAAATTAAAGGGTTTTCTGCTTTTTGTATGCCCTTCCCATGGCA
AGACGTCTTCCCGTCTATGCACAAGTAAGAATCAGCTGTGCATTGCGCAT
CTTCATCTTGCCGCAACTACCACAGAAGTGTCCAGTACGTGTCTGGTCCT
GTCGGCAAGCAGCTATCACCTGCTTGCAGTTCTGAACCGCAAATGGCTGC
GTGAAATTGCGGCCTTGCTTGCTGCCTTGGATGCAATACGATTGTTGTGG
TCTGGCGAGATCTTTTTTCATTATTGTCGGGGTGACGTCACGTTCGCCCC
CTTGTTGCCTCAAACCATGCTAACACCCCCACCTTATCACCCAATGAGTT
TTCACTCACCAACTGCGGCCGTGCCACCCCCGTGTTGGGGGGACACGTGA
ATCAGTAGCCGATCTATCGACCCTGCCGGGGCGGTGGGATGCCGGTACGG
TAATCACACCATGTCACGAATACGGTGTTTGGTATGTGTGAAGGTCTCTC
TTTTGACTGATCGTGTGCGAAATGAATGTCACGGCCGGCAAACGAACGAA
CACACATGCAGGGTAGTGATGGGGGCGAGCGAGACTACCAGTGCTACTAC
TGACGGTGATGATAGCAGCGGCGGCGCAGCTACGGATGGCGACCAAGAGG
GCTCGAGGGCTAGCTAATCTTTCAGAATCCGGCCGCTCCTCTCCAAGGAG
ATTGAATGCGTGCTTCTGGCAGCGCCCTTTGATTTAACTGTACCCTGGTT
TTCGTTCTTGTTGTTCTTGTTGTTGGAGCCGTAAGCATCCTATTTCGACC
AGAGGTGGACTCAGCCCGTATTTATTAGTGTTTGTAGCAGTTTAATCCAC
TTTCCCTTGGAGTATAAGGGGTGGGCGCAACCTTCGTTCGGCATTTATAG
CAGGTGCAGTTTAATCCGTTTTCTGTGAGTATTTCGCGGGAGTAGGGAGG
GGGCGGGGTATCGGTTAGAAATCACAGGAAGTGCAAGGGGACTACACCAA
CGCTATCTGTCTGCGATGTTTCTTTGCAGGGCGTACCATCTCGGTTGGGT
TGTTTTTCCTTGCAACGGTGCTTCCACTTTTGTTGCATATCATACAGCGT
GTTGGGGCATGCGGCGATGATACGGCGTGTGGACAGCAGTGTTGGCGTGG
GCATGGTGGTCTTGTTGGTCTTGTTGGTGTCAGTTGTTGTGCGTGCGGCA
CGTGCCTTTGCTCAGGAGGCTGGATCTCGAATTCAGCGGTTTCTTCGATG
TGTAGGTACGCAAGGGGGCGAAGAAACGGGCGAAGAAACAGAGAGTTTTA
CTAAAGAGGTTACTTTCTGTGCTGCGGTGTCCATTTGGAACCGCGGGACA
CCCCGGAGACTTCTAGATGCGTTCGACGTATATCTGTACCCAGCGCCCGC
GACATTGACAGCAGTACGGCGTCTTTGAGAGGAGAGGGCAGGGGGGGATA
GGCTTGCAGAGACCGGCTCGCTGCTCCAACTACCATAGAGGCAGGGTAGT
TTTTGGTCTGCGGCAAGGCAGCCATTTCGTGTTTCGCGAGATGCGTTTTT
TTACACATGCTTATATCTTCTTTCCTTAGCCTGGGGGGTAGTTTAACACC
TAACAGTAGTCGATAAAGAGAGGCATTTTTTCCGGTGAGTACGACGTGCA
AACCCGAACCAGAACCCAAATTGTGGAGACATGTTGCATATGTCGCTTCT
AATATTTGAAGCCCAAGGACGCACGCTGGAGGGCAGAAGATGCGCGCTTT
TGTCGTTGTCGCGCCTTGGGTACAGCCACAGCGCTGGCAGCGTCGGGATA
GAACCAACTCAAACACGTATGACAAGAGGTACATCAAATTGAAAGAAAAA
AACGTTTCCTCCCCGAAAAGCGACGTTACCGCCCCGGATGAAATCAATCA
CCGATTGACCACGGATTTTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig9:450590..455460+

>mRNA_P-littoralis_Contig9.117.1 ID=mRNA_P-littoralis_Contig9.117.1|Name=mRNA_P-littoralis_Contig9.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig9:450590..455460+ (Pylaiella littoralis U1_48)
ATGTCGCTATCTCACCGTGCAGGTACAACAATGCTACGACCATCGATGTA
TTTTCAAACACTGCTCCACGTCACCCTCCTTTCTGGGATGGTTCACGCCT
TTTTTAGAGGATGTATCTCTTTCAGGCACAAGACATGTCAACAATATCGA
CATCACACCTACTCCTCTGCCGCTGCTGCTGCTGCTGCTGCTACATTGTC
ACGACGATCTGGCAGCTCTACTGACGCGACTACCGGTAGGTGGATTTCAG
GGTTGCAACTGCGGCCATCTGTATCGTCCAAGCATCAGCTCCGTCTCATG
CCCAACGAGTACGACGCGTTCTTCAACAAGGCTTCGAGGTTGGGGGCAGA
CGCGACTAGGGGTCTGACCCCGGAGGAACGCGCCCAGAGAGCGTTGGAGG
GGGAGAAGCTGGAAGACGACATAATCGAGATCGCGACCGTCTTGCGAGAA
AAGGCGGACGCAATGGTTGCGGAAACGGGCGCGATCAACTTCGAAGTTAT
CCAGCCGATGATCGACGAGATCGCCGTCCTAAAGAGCAAGTACAAGGTAG
TGATGGGGGCGAGCGAGACTACCAGTGCTACTACTGACGGTGATGATAGC
AGCGGCGGCGCAGCTACGGATGGCGACCAAGAGGGCTCGAGGGCTAGCTA
A
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