prot_P-littoralis_Contig9.97.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig9.97.2
Unique Nameprot_P-littoralis_Contig9.97.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length97
Homology
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: D7FKG9_ECTSI (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG9_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.550e-39
Identity = 69/85 (81.18%), Postives = 71/85 (83.53%), Query Frame = 0
Query:   25 GNLKGYDHTINLVLEGCKERIYSQARGVEQ-------------VQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 96
            GNLKGYDHTINLVLEGCKERIYSQ+RGVEQ             VQLGLYICRGDNIAVIGE DEVEDASKDLSRI+AEPLKPVTH
Sbjct:   35 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVVQVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 119          
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: A0A835ZJ72_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ72_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.010e-37
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 96
            MA +L ELQGK VS+IT DGR I+GN +G+DHTIN++L+ C ER+YS    VE V LGLYI RGDNIAVIGE DE  D  +DLS ++A P+KP+ H
Sbjct:    1 MATTLSELQGKPVSIITNDGRNIVGNFRGHDHTINVILDSCHERVYSTTAAVEVVPLGLYIVRGDNIAVIGELDEAADTERDLSSLRAVPIKPLAH 96          
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: A0A8B7Z2R1_ACAPL (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Asteroidea TaxID=7588 RepID=A0A8B7Z2R1_ACAPL)

HSP 1 Score: 124 bits (311), Expect = 4.090e-35
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 96
            MA+ L+      VSVIT DGRQI+G LKG+D TINL+L+   ER+Y+ A GVEQV LGLYI RGDNIA+IGE DE  D++ DLS +KAEPL PV H
Sbjct:    1 MASGLESYINHTVSVITNDGRQIVGTLKGFDQTINLILDESHERVYNSASGVEQVVLGLYIIRGDNIAIIGEIDEETDSALDLSNVKAEPLNPVVH 96          
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: A0A5S6R3V4_TRIMR (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R3V4_TRIMR)

HSP 1 Score: 124 bits (311), Expect = 4.210e-35
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPV 94
            MAA + + + KLVSVITGDGR ILGNLKG+D TINLVL+   ER+YS+ +G+E+VQLGLYI RGDN+A+IGE DE  D   DL+  +A+PL P+
Sbjct:    1 MAAGIDQYKDKLVSVITGDGRHILGNLKGFDQTINLVLDEACERVYSKEQGIEEVQLGLYIIRGDNVAIIGEMDEEMDRRLDLTNTRADPLMPI 94          
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: A0A7I8VGN1_9ANNE (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VGN1_9ANNE)

HSP 1 Score: 123 bits (308), Expect = 1.170e-34
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 96
            M+ SL  L G++VSV+T DGR I+G LKGYD TIN++LE   ER++S   GVEQV LGLYI RGDN+AVIGE DE  D S DLS+I A+PL P++H
Sbjct:    1 MSGSLDTLVGRVVSVLTNDGRLIVGMLKGYDQTINIILEDSHERVFSATSGVEQVALGLYIVRGDNVAVIGEIDEEHDKSIDLSKICADPLNPISH 96          
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: UPI0006B0C9FC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0C9FC)

HSP 1 Score: 122 bits (305), Expect = 3.350e-34
Identity = 61/96 (63.54%), Postives = 70/96 (72.92%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 96
            MAASL+      VSVIT DGR I+G LKG+D TINL+L+   ER+YS + GVEQV LGLYI RGDN+AVIGE D+  D   DLS IKAEPL PV H
Sbjct:    1 MAASLESYVNHTVSVITADGRNIVGTLKGFDQTINLILDESHERVYSSSHGVEQVVLGLYIIRGDNVAVIGELDDDLDERLDLSSIKAEPLNPVVH 96          
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: A0A6P6YHQ5_DERPT (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Pyroglyphidae TaxID=6952 RepID=A0A6P6YHQ5_DERPT)

HSP 1 Score: 120 bits (301), Expect = 1.360e-33
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 96
            MA +L+   G+ VSVIT DGRQI+G LKG+D TIN+++E C ER+YS + GVEQV LGLYI RGDN+AV+GE DE  D   + S I+AEPL PV H
Sbjct:    1 MANNLESYVGRTVSVITVDGRQIVGTLKGFDQTINIIMEECHERVYSVSAGVEQVFLGLYIIRGDNVAVVGEIDEELDKKVNYSIIRAEPLNPVVH 96          
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: H2XL05_CIOIN (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=H2XL05_CIOIN)

HSP 1 Score: 120 bits (301), Expect = 1.360e-33
Identity = 53/96 (55.21%), Postives = 73/96 (76.04%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 96
            MA++L+ L  ++VS++T DGR I+G LKG+D T+NL+L+   ER++S + GVEQV LGLYI RGDN+AV+GE D+  DA+ DL  +KA PL PV H
Sbjct:    1 MASALEPLVNRIVSIVTADGRMIVGTLKGFDQTVNLILDESHERVFSSSHGVEQVMLGLYIIRGDNVAVVGEVDDTTDAALDLENMKAAPLNPVLH 96          
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: UPI0014259F6A (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259F6A)

HSP 1 Score: 120 bits (301), Expect = 1.360e-33
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 96
            MA +++      VSVIT DGR I+G LKG+D T+NL+L+   ER++S A+GVEQV LGLYI RGDNIAVIGE D+  D+S D+S I+AEPL PV H
Sbjct:    1 MATAIESYVNHTVSVITNDGRVIVGTLKGFDQTVNLILDESHERVFSSAQGVEQVLLGLYIIRGDNIAVIGEIDDETDSSMDMSNIRAEPLNPVVH 96          
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: W7TRW1_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRW1_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.950e-33
Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 96
            MAA+L++L+ +++ VIT DGR I+G LKG+D T N++L+ C ER++S   GVEQV LGLYI RGDNIAV+GE DE  DA+ DLS +K + LKPV H
Sbjct:   25 MAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKG9_ECTSI1.550e-3981.18U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=E... [more]
A0A835ZJ72_9STRA3.010e-3761.46U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=T... [more]
A0A8B7Z2R1_ACAPL4.090e-3562.50U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=A... [more]
A0A5S6R3V4_TRIMR4.210e-3561.70U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=T... [more]
A0A7I8VGN1_9ANNE1.170e-3461.46U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=D... [more]
UPI0006B0C9FC3.350e-3463.54U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=L... [more]
A0A6P6YHQ5_DERPT1.360e-3360.42U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=P... [more]
H2XL05_CIOIN1.360e-3355.21U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=C... [more]
UPI0014259F6A1.360e-3359.38U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=A... [more]
W7TRW1_9STRA1.950e-3358.33U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=M... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 3..72
e-value: 4.1E-17
score: 72.8
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 4..71
e-value: 1.0E-17
score: 63.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..96
e-value: 5.5E-24
score: 85.8
NoneNo IPR availablePANTHERPTHR15588:SF9U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8coord: 1..96
IPR044642U6 snRNA-associated Sm-like protein Lsm1/8PANTHERPTHR15588LSM1coord: 1..96
IPR034103Sm-like protein Lsm8CDDcd01727LSm8coord: 2..92
e-value: 7.69786E-43
score: 132.65
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig9contigP-littoralis_Contig9:383595..396378 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig9.97.2mRNA_P-littoralis_Contig9.97.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig9 383491..397052 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig9.97.2 ID=prot_P-littoralis_Contig9.97.2|Name=mRNA_P-littoralis_Contig9.97.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQAR
GVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044642PTHR15588
IPR034103Lsm8
IPR010920LSM_dom_sf