|
|
Homology
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: D7FKG9_ECTSI (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG9_ECTSI) HSP 1 Score: 135 bits (340), Expect = 1.010e-35 Identity = 69/85 (81.18%), Postives = 71/85 (83.53%), Query Frame = 3
Query: 177 GNLKGYDHTINLVLEGCKERIYSQARGVEQ-------------VQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 392
GNLKGYDHTINLVLEGCKERIYSQ+RGVEQ VQLGLYICRGDNIAVIGE DEVEDASKDLSRI+AEPLKPVTH
Sbjct: 35 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVVQVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 119
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: A0A835ZJ72_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ72_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.650e-33 Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 3
Query: 105 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 392
MA +L ELQGK VS+IT DGR I+GN +G+DHTIN++L+ C ER+YS VE V LGLYI RGDNIAVIGE DE D +DLS ++A P+KP+ H
Sbjct: 1 MATTLSELQGKPVSIITNDGRNIVGNFRGHDHTINVILDSCHERVYSTTAAVEVVPLGLYIVRGDNIAVIGELDEAADTERDLSSLRAVPIKPLAH 96
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: A0A8B7Z2R1_ACAPL (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Asteroidea TaxID=7588 RepID=A0A8B7Z2R1_ACAPL) HSP 1 Score: 123 bits (309), Expect = 1.910e-31 Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 3
Query: 105 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 392
MA+ L+ VSVIT DGRQI+G LKG+D TINL+L+ ER+Y+ A GVEQV LGLYI RGDNIA+IGE DE D++ DLS +KAEPL PV H
Sbjct: 1 MASGLESYINHTVSVITNDGRQIVGTLKGFDQTINLILDESHERVYNSASGVEQVVLGLYIIRGDNIAIIGEIDEETDSALDLSNVKAEPLNPVVH 96
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: A0A5S6R3V4_TRIMR (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R3V4_TRIMR) HSP 1 Score: 123 bits (309), Expect = 1.960e-31 Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 3
Query: 105 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPV 386
MAA + + + KLVSVITGDGR ILGNLKG+D TINLVL+ ER+YS+ +G+E+VQLGLYI RGDN+A+IGE DE D DL+ +A+PL P+
Sbjct: 1 MAAGIDQYKDKLVSVITGDGRHILGNLKGFDQTINLVLDEACERVYSKEQGIEEVQLGLYIIRGDNVAIIGEMDEEMDRRLDLTNTRADPLMPI 94
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: A0A7I8VGN1_9ANNE (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VGN1_9ANNE) HSP 1 Score: 122 bits (306), Expect = 5.270e-31 Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 3
Query: 105 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 392
M+ SL L G++VSV+T DGR I+G LKGYD TIN++LE ER++S GVEQV LGLYI RGDN+AVIGE DE D S DLS+I A+PL P++H
Sbjct: 1 MSGSLDTLVGRVVSVLTNDGRLIVGMLKGYDQTINIILEDSHERVFSATSGVEQVALGLYIVRGDNVAVIGEIDEEHDKSIDLSKICADPLNPISH 96
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: UPI0006B0C9FC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0C9FC) HSP 1 Score: 121 bits (303), Expect = 1.450e-30 Identity = 61/96 (63.54%), Postives = 70/96 (72.92%), Query Frame = 3
Query: 105 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 392
MAASL+ VSVIT DGR I+G LKG+D TINL+L+ ER+YS + GVEQV LGLYI RGDN+AVIGE D+ D DLS IKAEPL PV H
Sbjct: 1 MAASLESYVNHTVSVITADGRNIVGTLKGFDQTINLILDESHERVYSSSHGVEQVVLGLYIIRGDNVAVIGELDDDLDERLDLSSIKAEPLNPVVH 96
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: W7TRW1_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRW1_9STRA) HSP 1 Score: 120 bits (302), Expect = 4.150e-30 Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 3
Query: 102 LMAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 392
+MAA+L++L+ +++ VIT DGR I+G LKG+D T N++L+ C ER++S GVEQV LGLYI RGDNIAV+GE DE DA+ DLS +K + LKPV H
Sbjct: 24 IMAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: A0A6P6YHQ5_DERPT (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Pyroglyphidae TaxID=6952 RepID=A0A6P6YHQ5_DERPT) HSP 1 Score: 119 bits (299), Expect = 5.620e-30 Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = 3
Query: 105 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 392
MA +L+ G+ VSVIT DGRQI+G LKG+D TIN+++E C ER+YS + GVEQV LGLYI RGDN+AV+GE DE D + S I+AEPL PV H
Sbjct: 1 MANNLESYVGRTVSVITVDGRQIVGTLKGFDQTINIIMEECHERVYSVSAGVEQVFLGLYIIRGDNVAVVGEIDEELDKKVNYSIIRAEPLNPVVH 96
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: H2XL05_CIOIN (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=H2XL05_CIOIN) HSP 1 Score: 119 bits (299), Expect = 5.620e-30 Identity = 53/96 (55.21%), Postives = 73/96 (76.04%), Query Frame = 3
Query: 105 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 392
MA++L+ L ++VS++T DGR I+G LKG+D T+NL+L+ ER++S + GVEQV LGLYI RGDN+AV+GE D+ DA+ DL +KA PL PV H
Sbjct: 1 MASALEPLVNRIVSIVTADGRMIVGTLKGFDQTVNLILDESHERVFSSSHGVEQVMLGLYIIRGDNVAVVGEVDDTTDAALDLENMKAAPLNPVLH 96
BLAST of mRNA_P-littoralis_Contig9.97.2 vs. uniprot
Match: UPI0014259F6A (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259F6A) HSP 1 Score: 119 bits (299), Expect = 5.620e-30 Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 3
Query: 105 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH 392
MA +++ VSVIT DGR I+G LKG+D T+NL+L+ ER++S A+GVEQV LGLYI RGDNIAVIGE D+ D+S D+S I+AEPL PV H
Sbjct: 1 MATAIESYVNHTVSVITNDGRVIVGTLKGFDQTVNLILDESHERVFSSAQGVEQVLLGLYIIRGDNIAVIGEIDDETDSSMDMSNIRAEPLNPVVH 96
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D7FKG9 |
| Preferred name | LSM8 |
| PFAMs | LSM |
| Model size | 1069 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K12627 |
| KEGG Pathway | ko03018,ko03040,map03018,map03040 |
| KEGG Module | M00354,M00396 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005688,GO:0005689,GO:0005697,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008213,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0018130,GO:0019438,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030620,GO:0031974,GO:0031981,GO:0032259,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034708,GO:0034709,GO:0034719,GO:0036211,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0070034,GO:0071004,GO:0071005,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:0120115,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1990234,GO:1990904 |
| Exons | 5 |
| Evalue | 2.54e-40 |
| EggNOG OGs | KOG1784@1|root,KOG1784@2759|Eukaryota |
| Ec32 ortholog description | similar to U6 snRNA-associated Sm-like protein LSm8 isoform 2 |
| Ec32 ortholog | Ec-12_002120.1 |
| Description | mRNA splicing, via spliceosome |
| Cds size | 291 |
| COG category | J |
| BRITE | ko00000,ko00001,ko00002,ko03019,ko03041 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791791.1587448-UTR-P-littoralis_Contig9:383490..383594 | 1680791791.1587448-UTR-P-littoralis_Contig9:383490..383594 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig9 383491..383594 + |
| 1680791791.2438943-UTR-P-littoralis_Contig9:396378..397052 | 1680791791.2438943-UTR-P-littoralis_Contig9:396378..397052 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig9 396379..397052 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791791.1745079-CDS-P-littoralis_Contig9:383594..383625 | 1680791791.1745079-CDS-P-littoralis_Contig9:383594..383625 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig9 383595..383625 + |
| 1680791791.1901019-CDS-P-littoralis_Contig9:384009..384050 | 1680791791.1901019-CDS-P-littoralis_Contig9:384009..384050 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig9 384010..384050 + |
| 1680791791.2037525-CDS-P-littoralis_Contig9:395188..395278 | 1680791791.2037525-CDS-P-littoralis_Contig9:395188..395278 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig9 395189..395278 + |
| 1680791791.2162645-CDS-P-littoralis_Contig9:395713..395751 | 1680791791.2162645-CDS-P-littoralis_Contig9:395713..395751 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig9 395714..395751 + |
| 1680791791.2309291-CDS-P-littoralis_Contig9:396287..396378 | 1680791791.2309291-CDS-P-littoralis_Contig9:396287..396378 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig9 396288..396378 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig9.97.2 >prot_P-littoralis_Contig9.97.2 ID=prot_P-littoralis_Contig9.97.2|Name=mRNA_P-littoralis_Contig9.97.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQAR GVEQVQLGLYICRGDNIAVIGEFDEVEDASKDLSRIKAEPLKPVTH* back to topmRNA from alignment at P-littoralis_Contig9:383491..397052+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig9.97.2 ID=mRNA_P-littoralis_Contig9.97.2|Name=mRNA_P-littoralis_Contig9.97.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=13562bp|location=Sequence derived from alignment at P-littoralis_Contig9:383491..397052+ (Pylaiella littoralis U1_48) TGTAACTCGATGCGTGACGTGTGCGAAGGGCATAACACAAAGTATCGACT
GATTCCGGGATTCAGGAGGCTCGCACTTGAAATTTTACTCTTCAGCGCGA
TCTAATGGCAGCATCTCTTCAGGAGCTGCAGGGCAGTGAGTCTGGCGTAT
CGTATCTTACGTTCTGTCAGATAAGCAACTAATCGATGTACTTCGAAGTA
CTTCGTATGTTCCAGTGCAACAGCAGCAGGTGTTGCATGTTGTGTTGTTG
TCGTCGTGCCATGTACTAAACGCCGCAAAGCTTACACGGATTATTGCTTG
TCAATCGAACGCCATTTTTTGCCACTCAATCACTTCTTATCTGTGGTACT
TCGGACTTCGAAGTTGATTTCGCACTGCAGTATTTATTTGCTTTCTTATC
GAGCTTCCCTTCCTCTCTGTCTTGCTCATGTCTGGGGCTTTTGGCCTGTT
CGTCGCCTCTCTCCGCTTGAATACATGGATGCCGGTTCACCGTCAAATCT
CCGTGGCGATGCGCCAAAGAACTTGTGTCTGTCATTACAGGAGATGGCCG
ACAAATTTTGGTGAGATGCCTGAGATGCCTGGCGCGATAACCTCGTTGTT
CATCTCTTATACCTTGTAGAAGAACATCATCACACGGTCGAAATTCAAAA
ATGTATCTTTAGGCCACACATATCTCGCATGTCTCATAAACCGAAAACTG
AAAGGCGGGCGTTTTGAGGCCGACTCCTAGGCCCACTTTCATGGTAGATG
GACACTTGGAATTTCTGGATTACTCGAGTTGGAAAAACATTTTCCAAGCC
TGAATTTCCAACTCGGAATATGAGGCGGGGGCAAACTTACGGGAAAATTA
CTGCTGCTCGTGGTGCAGAGCGGCAAGCGTGATCGTCAGCACGTCCAGGG
TTGCATGTAGCTTGAGTACCTGCACCTGCTCGTGTGTTTGTGTGCTCGTA
TGTGTGTATTTGTGCTTGGCGTGGGCTGTGAACCACTTGCGGCGTAACCT
CGTGGCTGCGAGCGCGACGGATTCCAACTTGGAATCAAACGTCTTTCGGG
TTAGAATCCATCGACGGATTCCAATCGACTCCAGTAGAATCCGGAGACTT
GGAAAACGTTTCTAGATTTCCGATTCCAAGCGAAAACAACCCCCGTGTGT
TGTGTGTGTGTGTTGTCATCCCTTTCATGGGACGCCACTCTGCACCTTTC
GGGTAGGTCGACGCTCCAACTGGGGTCACACAGGGGGAAGTCAACACAGG
AGTTTATATATATATTTTCTCCACTTCCCTCTGCGGTGCTTGCCTTGTTT
TGGTTGAGCTTTTATCGCGAGAAAGGGGACAGCGATCCCTTTCCCTCGTC
GATGGTACGATCGAATTTTGTTTACTCACGAATTAATCGCTTTCCACTTT
CACGCGCATTGTGAGAAGAAAACCCAGGTCGTGTTACTGCACTGGGATTC
GAACTCACGCGTGAATGTCAGAAGGTCAGGTGGGTTACCAACTGAACCAC
CGGGCCGACCAAAAGTAATTTTTCAAGCCTAGTAATTTTCCAAGCCTGAT
TTTCCATATTGGAATATCAGGCTGGGAATTTCCAACTTGGAATATCAGGC
TGGGGCCAACTCATGGGAAATCGGAGAAGATGGACAACGATTGGAAATCA
AATGGGGTTGTCGCATGGACGGCAGGCGGTTTGGGCTAATTTTGAGAAAT
AGCGATCATGGCGCAGAGCGGCAAGCATGATCGTCAGCACGGCCATGATC
GCACATAGCTTGGGTACCTACACCTTGCTCGTCTGTTTGTGTGCTTTTGT
GTGTATTTGTGCTTGGTGCGGCCTGTAAACCACTGCGGCGTAACCTCTTG
GCCGCGCGCGCGATGAATTCAACTTGGGGTCCGAGGTATTTTGGGTCGGA
GTCCGTCGATGAATTCCAAGCGACTCGATCGGAATCCAGAGATTAAATAC
TTTTCGATTCCAAACGAAAACAACCCCCGTAAGGCTACTTCTTGCAGATC
GGAATCCCCTCACCAGAATTGGCATTTTTTATCTTGGGCATCTGGAGGCG
ATCCTACAGATCAGAAAACCCTTCTTTATCTGAAATTTACTTCAAAGTAA
TAACTTTTTCCGATCGACCGAATCGATGAGGAAAAAAAAAATCTGATCGA
TTCGGTCGATCAGAAAACGTTTATTGGAAAAGTTTGGGCATTCCCTCACC
AGAGCCTTTCACGAAGAGTCGGGTGTTGAAAAAACAATTTTGCAAGCCCA
TCGATGCCTCGCAGCCTGACATGACCAACGGAGAAGAGGTACTAGACACA
CAACTCACGGGCTATGGCTTTGCTGTTGCCGTGGGTCCATTCGATCCAGA
GCGATGGACGAAACATAAAAGTGTGGGATGGCGGAATTCTTCAACGCAGG
AGCCGCAGCAGCAGCAGGAAGCAGCAAGCAAGGTTTTTCGTATTTTGCGC
CGGTACACCAGTTTGGCTGTTCATCCATCATTCTCAAACCAATTGAGCCA
CAGCAGTACCAAAGTCATCGCCCGTGAGCGGTGTGTCTGGTCCTTTTCCT
CCGCTGATCATCTGAGGCCGGAAGTCATCAATAGTAAACAACAGAAGCGT
TGCAGAAATCGACGAGTTGTGAATTTTTTTGAGAAAGAAAGGCCGTTAAT
GCAGCGAGTCCAGCAGACAGACAGACAGACAGTGATTTCTTCTTTTTTAT
TCACAAGTGGCCGATTTCTGCAACGCTTCTATTGCTAGCCTGTTGATGCC
TTGCGGCCTCAGATGACCACCGGAGGAGAAGGACCAGACACAGCTCACGG
GCGATGGCTTTGGTACCGTAATCCACACAAGATAACACACCCCCATAAGA
TACCACACCCCCCACACAATACGACACCCCGGTGATAACTTTGGCTTCAT
TTTTCAGACCAGCGATTTATCACCCGGGCTACACAAGATAACACACCCCG
GTGATAACACCGCATACATTCACGGAGCCTCTCCTTCTATCACCCGGGGT
GATACAGCATCTGGCCCTGGGCACGTTTCGCAGTGTAGGTTTGTGGTTCG
TGGTGTTAGATGTTTGGTGGTGGTGGCTGTACTTAACTCTCTTTTGGTCG
TGCCCACTAGCAAGGTATGCAGCAGCCTGGTACTTTTTTGTGAGGGAGCA
GGACGGATGGCGCACTCTGTGGCAACCGCCTCGCATCATATCGGGCGAGG
TACCCTCGATTTAAATCACCATATTCGATGCTTCATCAGCAGAGCAGCCG
TGTTTTGTGGGAAAATTTCTTCGGCGTTGGGGGGGTTGAGTCATCGCCGA
GGTCATGTGGTCAGGATTTTCGTCACCTCCGTTGAACAGTGCAGCGGCAA
GTGTCGTACAGGCATTGCTATCACCCCCCCGCAATACGACACCCCTTCAA
TGTGCGGCAGCAGCGGTTCAACTCTACAAGCGGTGTTATCACACCCCCTT
TTTATCACACCCCCAAACACACCCGGTGGGTGTTCGGACGTGTTATCACA
CCCCCTTTGTATCACACCCCCTGATTTATCACACCCCCTGGGAGGCCCCT
GCGAGCTGCGCTTTTATCACCGGGGCTACACAAGATACCACACCCCCCAC
ACAATACCATACCGGTGATAAAAAAATTTAAAGCCCGAAATGTTTTCACC
GGGGTGTGTTATCTTGTGTGGATTACGGTATTGCTGTGGCTCAATTGGTT
CGAGAGTGATGGATGAAAAACCAAACTGGTGTACCGGCGCAAAATACCTT
GCTGCTTCCTGCTGCTACCGCGGGCTTTCTTGTCTTTTCCTTTTCCATTT
TTTTCACACGTCATCGATGCCTGCAAGTTTTTTTTTGTGAGCCTGTTTAT
GCCTCGCGGCTTCAAACAACGATCGGAGGAGCACGACCATACACACAGCT
CACGGGGCATGGCTTTGTCATTGCTGTGACTTTATTCCTTCGAGAGTGAT
AAAAAAATACGCTGCCGCCTGCTGACGAAATTATGTCAACCGTCTGCCCG
TCTGTCAAACATCTAACAGCTGCAGAAGGGAGACGTATTTCCGGAAGAAA
CTCGTATAAAAAAAGTTGAATCACCCATGAAAAAAAAAATCACCTGCGGT
TCCATATAGGAAGCGGTGCTTCCAAAAAGCCTGTTGGAATTGTTCTTAAT
GAATAAGACAGATTCTGATCAAGGCGTTTCCGATCTACAAGAAGTAGCCT
TAGGCGGTTTCTTGTAGGGCCGGATTTTTTTTCATTTTTTGATAGAATCT
GAACGAACTTTTTCCGGCCAACGGCTGCCCATCCGCTGTTCTTATAGGTG
ATAGGTGTTCGGATTTTCGGTGATCCTTTTTTCAAGTAGTCGGTTGAAGA
GTCGGCTCCAGAGTATATACAGTATCTGCATCGAAGGACCGCATGATGGT
GTTTTTTGCGCTGAAACCCGTCTGCATCGCCGCTCGTAACTTTCGAACGA
ATGAAGACACAGCAATGACGAAGGCATCTTCCGTCAGCTGTGTATATGAT
CCCCCTCGTGTCGTGATCGCTTGGGTTTGGGTTACATCCGTACATTCGCA
ACGTAGGTTTGCTCATGGCCAACTCATGCGAAACAAATTGAGAAAGATGT
ATCAGCCGGTCTTCTGTACAGCAGCATTATTATATACTGCTGTATGTGTG
GTAGTTGTACAGCAGTAGAGAAAGGAGATGACAGCTCGGGTTCTTTTTAT
AACACAACAACAGGCCACAGCCACGAGCGATGACCATTTTGCGAACATGC
CAGTGTGATCCTCACCCAAACGATTACCACACGAGGGGAGCCATACGCAC
AGCTCACGGGAGATGGGTTTGTCATCGCTGTGGCTTCATTGGGGAGTTAC
GAGCGAAGACGCAAACTGTGGTCTCACTCAGAGGAAGCTTTGATACTCCT
CCTCCTGCTGCTGCTGTGCTGATGATGCTCCTGCTACATACGGTTGGTTT
TGGTTGCTGATGAACACGATGGAATGGATGATGACACGGCAAGCGTACAC
AGAAAGGTGGTGGACACATGTATGGACAGCAGCAAGCAGTAGTAGCAGCA
GCAGGAGCAGCAGCTGCAACAACCCAGAAAGCAGTAGCAGCAGCTCTCCT
CCTCTTATGGTCTGTGGTGATTAATATCGTTTGTTTTGTCCACACACAAA
GAGAGAGACAACTTCACACCTTTTTTTTTAATATATTTTCCGATCATATT
TTCCGACCTGATCCAGCGTTCGGAAAATGTCCGATTTTCCGGCTGAAATC
CGATTAAAGCTGTTGGGAAAATTTTGTTCGGAAAATGTTGTTCGGAAAAA
GGGTGTTTTCCGAGCCTGTAAGAAGCCTGATTTCAAAACAAATTCGGAAT
CTATCAAAAAATGATTAAAAAATCCGGGCCACAAGAAACCGCCTAAGACA
AGACTATTTTCCAATCTTGAAATTCGCATTCCAATTCCTCATGTGAAACC
CTTGGATTCCAATTTTATGCTCTATCTAGAAGAGCGGGCCCAATATGAGT
GGGTCTGAACATTGGTCCGAGATCGCGCATCCTATGTGAACAGAAACAGC
CTTTTTTCTACAACGATTCTTAGAATAGCTTTTTTCGGTAGCCCCAAACG
ATCAGAAAAAATATTTTATTTTCGCCCTGCACCTATCGGAAACCTGTTTT
TTGGGGTCAAGGGGTTCGATCACCACGTCAGATTCATCCTTGCATGTTGA
GATGACCGGAAAAATTTATTTCGGCAGCCCATTGATTCGTCGCGGTCTCT
GATGACCGCCGCAAAAGAAGGACCATGTACACAGCTCGCGAGGCATGGCT
TCAGCAGTGCTGTGTGGCTTCATTCTTGCGAGAGTGGCGAACGAAAAAAG
AGCGAACCGGCTACGGCAGTACAAAATAAATGTCAAACGTCAACCATCAA
TCCGCCCGAGCGGAACAGTAGATACTTTTTTTTCGAAATATTTCATCAAA
CGAACCGCCCCAGGCAACTCGCACGTCAATCTTGGTGAGGCTATCAAACG
CAGAGTGTAGGTTGCACGCGTCTACACAATTCGAGTGCCCGTGATGGAGA
GTAAGGTACGTACACTCACACACATACATACGTGTACTTGGTGACCTGGC
CACAAAGGGTAAGAAACACGAAGTAGTCTACATTGATAGGTTCTTCGAAG
TAAATATCTTAGCGGAATTAAAGCATTGCTGCTCTGCTGTTGTATGCAGG
GACTCAAAATCTACTTCAGTCGCATAACCAGAAAAATCAAAGAAAAATAT
AGAATTGTAAACACTCAACACATGATGTAACGTGTGTCACACAAGACGAC
CACCAAATTGTCTCGTTTAGCCTGATACCCTCAAGGGAGCTGCAACGGTA
CATTGTCTGATGAGTCATGGAAACAATGGTAGATGTACGTCATTCTTTTG
TGTTCGCTGCAATATCTACTCCAGACCCTCGTCTCGAGAGAGGCGAACAC
ATTGATGTGTTTGTAAGTTAAAAAAATATATATATATATATAGCTATTAT
ACGCATTATGAATTCTCCCATATCGCAGCATTCCGATCGCTGAGAGGCCT
CCATTCCATTTTCACTTGAAATTAGACTAGGGCGGGACCACGTGTGCTTT
CCGCTGGGACGCTCAGGCGAGCTCAATGTCTGCATCCCATTTTTCGCGAG
CTTCCAAATTTTCGCAGAAGTCGTGGTTCATGCGACTCAATTCGCAGTTC
ACCATGACAGCATGCCTCAGCCTGCCTCAATAATGCCCATCACGGCACAG
CCACCTACCTCCCTTCACAGCAAGAACCTCCTTTCACAGCAAGCATAGAT
ATGCAGCAGCGGTAACACCCTTCACAGGAGTCAGATACGAGCTCGATGTC
TGCACCCCATTTTTTACTTGATCAAAGCTCGCTGCAATTTCACCCACATA
TATATTTCACGAGCTTCCAAATTTTCGCAGAAGAAGTCGTGGTTCATGCG
ACCCAACTCACAGCTCACCATGACAGCGTCCCTCAGCCTTCCTCAATAAT
GCCTATCACGGCACAGCCACCTACCTCCCTTCACAGCAAGAACCTCCTTT
CACAGCAAGCATAGAGATACAGCAGCGGTATGCCCTTCACAGGAGTCAGA
TACGAGCTCAATCAATGTCTGCATCTCATTTTTTACTTATCAAAGAACAC
TGCAATTTCACCCATATTTCGCGAGCTTCCAAATTTTCGCAGATGAAGTC
GTGGTTCATGTGACCCGACTCACAGCTCACCATTGTTATTAGATATTTAC
AGTGTATCCCTCACAGCAGATAGAGATATCCCCGGCATCCACAGCAAGGA
TATATACAGGGCAGTACGCCCTACACAGCAGTATGCCTTTCACGGCAGCG
TCACAGCATATAGAAAGAGCACACGACATTGGGTCAGAGTTGGTGTACCG
GTAGTCCTCTATATTGAATCTCACCTCAAACACATGAATCACGCGCAAAA
CAAATTCCAAGCGCACGATATTTTCCAAGCAGGTTCCGTGCGACCAGACC
TGACGACCTCTCTTCTATTTATTTCAAGCTGGGCAACAGGCCACATAATC
CACCCCCGACATGTCACGAAGAATCAAAACCATATTACTACCCCTTACAC
GTAACAATATACGTGTATACCCCCTACCAGTTAGTCATGCGAAAGCCAAA
ATGATACCCCTCACCCGTAATTAGGTATGCGAAAGCCATATTTTGATACC
CCTCACCCGTGAAAAATACCAGGGTATGACATACGTGTATACCTCTCCTG
CACGTCAGGAACAATACGAGTCGTTCCATATTGTTCATATTCATGCGTCG
TATACATCAAACAGTTTCTTCAGGACTATACTATCCACGTGAGACCGCAC
GTTTATGTTACAGCAGCCAAATATTTTTCTTAATCTTTCCGTACCCCCCC
CAAAGATTTGGGCTCTGCATTTCCAAAATTAACTTTTGTCTGTCCGTGCT
GCTTCTCGACCAGGAGTCTACTACCGCCCGCTGTACGAGTATATACTCCG
GAGTATTGTATATCTTGATGTTGTAGAACTGTGGGGAGGGTAGCATGAAT
GAGTGGCCCATCTCATCGCACTGTGGTGACTAGCCACCCATTATTACACA
ACAAATGGCGAACGTGGTGCGCCCATCCAGGGCTCGGCACAACCCTACGT
ACATTGCCTTGCCAAACTGGCCGCTGGACGGTAGCCAGCCGTCGTTCTTC
AGGCGTGAAAAAAAAAAACATTTGACCACAGTGTAGAAGCTGGAGATGTT
AAACAGCCTTCTGGAGGCCCACAGAACAAAAAAGACAACTTTTCGACAGA
CATCCGACCACACAACACTCGATTTCTCGCTCCATCGAGCACAGATCAAC
CTCAAAATTAGAAGGGTGGGATCTCCACTAACTGCTTACCGCAGCAGAGC
GTTGGGTTGGCGGTGGGGTCATTCAACCAGCAAGGAGTAGCAGCGCTCGA
GGGCGTGAGCTTCGAAAAAAAACAGAATCTGTCTTTTTTTTTCTCTCTTG
AAAATAGAAGGCTTCGTCTGCTGCCTTGAAAATCATGTTCCGACTAGATG
TTCGATACACAACGAACGCTGCTACTGATTGAATGATCCCACCGCCAAAC
CAAAGCCATATCGGCCGTACATAGTGAGTAGAGCTCCACCCTTCCAGGTT
TCGGCGTGATATGTGCTCTGTGGAGCGAGAAAGCGAGTGTGGTGTGCTCG
GGTGTCTGTTGAAAAGCTGTATTTTTTGGTTCAGTTCAGTGGGCCTCAAA
AATGCTGCTTGACATCCCCAGCTTCAATCCTGTGGTCAAATGTTTTTTTT
GCACACCTCAAGAACGATCGCCACCGGCCAGTGGCCAGGTTGGCAAGGCA
ATGCACGAAGGGTTGCTCCGAGCCCTTGATGAGCGTGCTACGTTCTGTAT
ATTTCTTGTGTTGTCGATGATTGTGTCTCCAGCAGCATGTATGTGTGGTG
TCTGCATGTGTGCGGAGCGGCACAATCGACCTCCCCCCCTCCAAACAAGT
TTTCGAGGAGGTGTGGCTCGCCTAAAAGTTCTGTCCAACTTTCCCAAATA
CCCAGCCTCGCGATCTCGATATCTCGATCCAAAAGGTTTCAAGATTCCAA
GGCAACTTTTCGCCCCCGTGCCATGTGTACATGGAGAAAGTTTTCTTGGA
TCACCCTCACCCCCCCACCAAAACTCAACATTAAGAAAAATATTTGGCTT
CCACAACGTGCGGTCTGTGAGGAGTAGTAGGATATTGCCGGTGTTTCCGC
GTCTTTCCGATTCATCTTTCTTTCGTTCGTGTCTTCCAACGGCGTCGCTG
TTCTCGAATGTTTCAATAGGATCGTGTGCATTGCCTTCCCTCTGGTGCGG
CCTCCATATTTACAACAGTTCGGCCAGGTGTTGGCCGCTTTGCCCTTTTG
TGTCTGCTTCTCTTCTTGCATTATTATTTGTTGCGTGATTCTTGGTGTAA
CGAGCCTTCGTTCTTCCGTGCCTACCAACCGGCGGTGTGACTGGCCTCCG
GGCTTCTGATTTTGATAAAGCTTGTGCTTTGCCTCCTTCCTGGTTTGGCC
ACGTTGTTGGCTTTTCAGATTTTTTTGTTTTGCTCCTGGATCTCTGTCGT
TGCTCGCACGGTGTGTGCATGTCACACAGTACAGGTGGCCACGGACACGT
TATGGCAGCTTATCATTTTTCACAACGCACAGAGGTTGTGAAGGGTTGTG
GGGTGATTGTGGGAGGACGGAATCGACCTGAAACCTTTTTTTCTGTGCTG
CCAGCCCGCCCTGTTGGTTGCATCAAAAATATAAGTACTAATATTGTTGG
GTTCAAAGAAAAAATGTAGGGTTCAGGTCGATTCCGTCCTCCCATAACCA
CCCCCAACCTTCCACAACCTTCCCAGGTTGGGCCATATGCATAACCTGCG
ACAACGTGTTCCAGTGGCCACCTGTGCATGATAAGGCAAAAACCCCCCAT
GATGTGGGGCTGTCCAATTTATTTACGTTTTGCTTTTTTTTCCCCTATTT
TTTCGCGTCGTCCGCAGTGTGCGCACTTGCTGCACACAGTTTGGCCTGCG
ATATATTTTGCTACCAGGCCTCTGTCGTTGCTCGCACGGCATGCGCCATC
TTGGAAACCCCTATATGGATATGGTCGCGAATAAATATTTCATCTTCATC
TTCGTATTCGCGAGACTTTTCATTCTTCCCTCCTTCGTGTCCGAACCACT
TGGTTGATATGACCAGGCCCGTCCCCCCCCTGCACTTACGGGTACATGTT
TGGCGCAACCATTTGTGCATGTCGGTCGCGGCCGCGCTTGCTTCTGCAAA
TACTATCACACCCTCCCACTAAGTCTTGGATTCGGTCATGATCGTGGCGG
CGTCAGCCGCCGAAAGACCTTGTACATATACATATTCTAAACTGCCTGCT
GCTTGGTTTTGACACATAAGATCGGGAGCTTCAAAATTGTACCAGTCTGG
CCGGGAATATAGCTGGGATTTGGACAAAAACGTGAATATCTTGGGGTAGA
GTACGAATTTTTTAGTACGGATTTTTGCATTGTGTTCACGATGACCTGGC
CATAAAAACTGTGAAACGAGTTCCCGAATGACGAAATAAAACTTTTCGTA
TCCTATCACGAAGGAAGGTCACTTGGAGATCTTCCTGGGAATTATCCCGG
TCGAGGTGGTTAAAACATTTTATTGTTTCTCATTTTTTTACATCGGATTT
GGGACTCTCTCCCGGTTCCAAAAAGCCAATAAAAAAGTGGTCATGAGAGA
ACTCCAACCACCACCAGCCTTCTTCAATTATCGATATTTTTCGATATTTT
GAGTCTAGCGCAAGTTGTAGATCGCCAAGTGACTTTGTAGAGCGCGGGGA
ACGCCCGTCCTGTTCTCGCGATCGCGCTCGTAAAAAAACATGATCGAAAA
AAATGTTTTTGTTTTCGAAAAAAAAACTGAGTTCGGGTTTCGAAAACAAG
AATAATTTTTTCGATCATTTTTTTTTACGAGTGCAATCGCGAGAACAAGA
CGGGCGTTCCCCGCGCTCTAAAAAGTCACTTGGCGATCTACAACTTGCGC
TAGCCCCAAAATATCGAAAAATATCGATAATTGAAGAAGGCTGGTGGTTG
TTGGAGTTCTTTCGTGACCACTTTTTTTATTGGCTTTTTGGAACCGGGAG
AGTCCCAAATCCGATTTAAAAAAACGAGAAACAATAAATGTTTTAACCAC
CTCGACCGGGGAAATTCCCATGAAGATCTCCAAGTGACCTTCCTTCGTGA
TAGGATACGAAACCTTTTATTTCGTCATTCGGGAACTCGTTTCACAGTTT
TTATGGCCAGGTCATCGTGAACACAGTGCAAAAATCCGTATTGAAAAAAT
AGTACTCCACCCCAAGATATTCACGTTTTTGTCCAAATCCCAGCTATATT
CCCGGCCAGACTGGTATGTTAGAAACGTTTTTATTCAAAGGTCTGAAAAA
AAATATGGTGTTTCCATCACCCAAGATGTGATCTTACTTTTTGATTTTGG
GCGTGTACTGCTGTTCGTATGTACATAAATACATTCGAGTACAAACGCAG
CGGTAAAGCGCAGCAGGAGGCCAGCAGGTTGTTAACTCTGCTGTAGACTA
GGGGTTCAGCAGCAGCGGTAGCAGCGAATGCCCAAGGACTTGTCGATGTG
CTCGGCGCACTCAAAGGCGTCGATATCCGTTCTTCTTGCAACACGCAGGG
AAATCTGAAGGGATATGATCACACCATCAACCTTGTCCTGGAAGGATGCA
AGGAGAGGATCTACTCTCAAGCACGAGGGGTTGAGCAGGCGAGACAGGCA
ACGTAGTGCAGCAGTGTGAAAAAGTCGTATGCTTCTATCGCTTACGACGC
CATCGGTTCCAATTTGTGTGGTTTGATGCCTTCGAACAGCGATGCGTACC
AGGAATCATCGAAGACGATGCAGCAGTAGCAGCGAGAACATCCAGAGACT
TGAGCTGCTTCGATGAGCGAACCGCATTATTTTTTTTCAGTTTTTTTCCG
CATTTCAAGTTATGGCGACGACATGCACGATTGAATAACTTGCCAAACCG
GGTAGCTGGGGCAAATCCCGCTTCGAAGTTCTCGAAGTAGGTTCTAGGCG
ATGCACACCTCAGCATGTCGCCGATAGGGAACTGAGTCTTTTGAATCCCG
TCCTCTTATCGATCGACCCTCTCTTGTCTTTCCCTTCGCTCCTTCGGTCT
GTGTTTCTGCTTTGGACCCGTAGGTGCAACTGGGTCTGTACATTTGCAGG
GGAGACAACATGTGAGAACTGCTTTTTCAGAAAGCGGCTAGCTCTGATAA
CCCAGGATGACGTTGGCGGAATCCAAATATTTTCCCATGCGTCAACTGAC
TGCATGAAAGCGTTTGCGAGGAAACGCTCTTCAGATTACGCGCCCAGGCA
GTTGTACAGCTCAAGTTTGTCCCGGCTCGTGAATGTCAATGGGGTTCGCA
CACATACATCGGTGGCCCAATTTTACAGACCGAAGGGAAGTCGCGCGTGA
TGTAGCACAAGACGTGTTGCCCGGAGCATATTTCGGGCATTCTGGCTGAC
GCAAAGCTCCGCCAGCGTGACCTATCCATAAATATAAAGCTCTACCAGCA
TGACCTCTTCCCACGTTTTCCCGTAGATCATCCGGTGCCACCCGTCGTTT
ACCATTGCGTTGGTTGTGCGGGATTCGTTGCTTTGACATTGCTTGTCAAC
ACGGCGACAACGCGTTTTCTTCCTTTTGCTTCACAAGAAAAAATTACACG
GGTTACCACCCCACATTTGCCCCGCTTGCCCCCCTCCCTGTGCGCAGCGC
TGTCATCGGCGAATTTGACGAGGTGGAGGACGCAAGCAAGGATCTCAGTA
GAATTAAGGCAGAACCACTAAAACCAGTCACACACTGAGAGGAAGGCACG
GCAAGATACGTCAGCCTCGGAGCCCCCCTTACCGCTCTTCGGAAGGCATG
CTTAGTTTGTGAGCCTTCGATATCCTCGAGGACAGCTGCACGCCGCCGGA
TATAACGCACGTGCGTGTTTCGGCGGAAGGGGGAGCTTAGCGGGGCGGAT
GGACACCCATCGTAGGAGGCAGGTGGCAGAACCAGCGGCTCTTGGGAAAT
ATTTTTTGAACAGCACTTGGTCGCAGTTTCTGGATGTGACTTGCATGCAT
GTGTACGTGTTGCGCAGACCGCAAGTGCTTATCGTTTTCAAGCGCTGTGT
CTTTTACTGGGCTGCCTCGTACTGAAACGCGACTCTCCAGCGGCCGATGT
GCCACCAACACAAGGATGCTACCGGCATGTTGGGCTGTGGTGCTGCAACT
CTTTTTGTGTTAGTACTTAGCTAAAGCATTCTCTGCGACTTGCAGGTACC
TAGAAATGGTGATTGAATATCTCGAACTACGGATGATAGACGTACCGACC
AACATACGTTGCAGCATCTGAAGCGTTATTAACTTTTTTGAACCACTTAT
TTTCATGTACACGAACGCAAAAGGCGCTACAACCACATGGACGCCTTCAA
CGCCCTTGCACACACTCATCACTTGACCGGTAAACATTCATCTGAACAAC
GCCCCCCTCTAG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig9:383491..397052+ >mRNA_P-littoralis_Contig9.97.2 ID=mRNA_P-littoralis_Contig9.97.2|Name=mRNA_P-littoralis_Contig9.97.2|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig9:383491..397052+ (Pylaiella littoralis U1_48) ATGGCAGCATCTCTTCAGGAGCTGCAGGGCAAACTTGTGTCTGTCATTAC AGGAGATGGCCGACAAATTTTGGGAAATCTGAAGGGATATGATCACACCA TCAACCTTGTCCTGGAAGGATGCAAGGAGAGGATCTACTCTCAAGCACGA GGGGTTGAGCAGGTGCAACTGGGTCTGTACATTTGCAGGGGAGACAACAT CGCTGTCATCGGCGAATTTGACGAGGTGGAGGACGCAAGCAAGGATCTCA GTAGAATTAAGGCAGAACCACTAAAACCAGTCACACACTGA back to top
|