mRNA_P-littoralis_Contig1209.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1209.26.1
Unique NamemRNA_P-littoralis_Contig1209.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1209.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1209contigP-littoralis_Contig1209:33770..34352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size583
Hectar predicted targeting categorysignal anchor
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.866724-CDS-P-littoralis_Contig1209:33769..341171680789517.866724-CDS-P-littoralis_Contig1209:33769..34117Pylaiella littoralis U1_48CDSP-littoralis_Contig1209 33770..34117 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.8787682-UTR-P-littoralis_Contig1209:34117..343521680789517.8787682-UTR-P-littoralis_Contig1209:34117..34352Pylaiella littoralis U1_48UTRP-littoralis_Contig1209 34118..34352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1209.26.1prot_P-littoralis_Contig1209.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1209 33770..34117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1209.26.1

>prot_P-littoralis_Contig1209.26.1 ID=prot_P-littoralis_Contig1209.26.1|Name=mRNA_P-littoralis_Contig1209.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MGLRLLFCCWRCLVRERSFLQRRPSPPWSTGACAKKDKHLLGVDEMKSTH
AKDPALTLAYLMSGIMCLGIFVPLFDHQPQERHHAVKSDWISLGIHPMTY
TQLHEIDPTFRQFDF*
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mRNA from alignment at P-littoralis_Contig1209:33770..34352-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1209.26.1 ID=mRNA_P-littoralis_Contig1209.26.1|Name=mRNA_P-littoralis_Contig1209.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=583bp|location=Sequence derived from alignment at P-littoralis_Contig1209:33770..34352- (Pylaiella littoralis U1_48)
AAGTAATTGATCGTGGTGGCAGATATAACAGAGGACAAGGTGCCCCCCCC
GCCCCCCAACTTGTGAGAATTTTTTGTATTTTGCCTCAAGGAAAAGGGAC
GAGAACCTCCGTTGTGGATTGCCCAAATATAAAAAAAACGAAGTTGTCGA
TAATGGGGCATAAACTGTCCTCCTGTAGTACGCAGTGTCCCCCCCTGCCC
CGCCCTTTGGATTCCCGAAGATTTGTTTTTGCGTCATGGGGTTGCGGTTG
CTTTTCTGTTGTTGGAGGTGTCTTGTGAGAGAGCGAAGTTTCTTACAACG
TCGACCTAGCCCGCCTTGGTCGACGGGTGCATGTGCAAAGAAAGATAAAC
ATCTGCTGGGTGTAGATGAAATGAAAAGTACACACGCTAAAGATCCGGCC
TTAACCTTGGCATATTTGATGAGTGGTATAATGTGCTTGGGTATATTTGT
GCCGTTGTTTGACCACCAACCGCAAGAGCGACACCACGCCGTAAAGTCGG
ATTGGATATCGTTAGGAATCCATCCCATGACTTACACGCAGTTGCACGAA
ATTGATCCAACGTTCCGGCAGTTTGACTTCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1209:33770..34352-

>mRNA_P-littoralis_Contig1209.26.1 ID=mRNA_P-littoralis_Contig1209.26.1|Name=mRNA_P-littoralis_Contig1209.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig1209:33770..34352- (Pylaiella littoralis U1_48)
ATGGGGTTGCGGTTGCTTTTCTGTTGTTGGAGGTGTCTTGTGAGAGAGCG
AAGTTTCTTACAACGTCGACCTAGCCCGCCTTGGTCGACGGGTGCATGTG
CAAAGAAAGATAAACATCTGCTGGGTGTAGATGAAATGAAAAGTACACAC
GCTAAAGATCCGGCCTTAACCTTGGCATATTTGATGAGTGGTATAATGTG
CTTGGGTATATTTGTGCCGTTGTTTGACCACCAACCGCAAGAGCGACACC
ACGCCGTAAAGTCGGATTGGATATCGTTAGGAATCCATCCCATGACTTAC
ACGCAGTTGCACGAAATTGATCCAACGTTCCGGCAGTTTGACTTCTAA
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