mRNA_P-littoralis_Contig899.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig899.18.1
Unique NamemRNA_P-littoralis_Contig899.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Match: UPI001F5E449C (uncharacterized protein LOC124816325 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5E449C)

HSP 1 Score: 108 bits (270), Expect = 1.920e-23
Identity = 63/164 (38.41%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   34 DAQHALWSPYKETYTLRLLIGVTPAGAICYVSDAYAGRTSDMELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPSKRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDNVGVVALICAALVNLTHEPFACLD 525
            D   + WS YK  YT++ L+G+TP GAI ++S  Y GR SD+ +V+ CGI+  L+       G   +ADRGF  I  +L     +   PPSKRT   Q T  D   T  + N+RI+V++AIG MK +RIL  +     L     +  +CA L N    P  C+D
Sbjct:  121 DTAASCWSNYKHHYTVKYLVGITPNGAISFLSSCYGGRASDVFIVKDCGILKFLQ------PGDQVIADRGFK-IKELLAFYQCNLAIPPSKRTNL-QMTSNDVRETSKIANVRIYVEQAIGRMKNFRILKNELPVTLLPLCDNIITVCAVLTNFM--PPLCID 274          
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Match: UPI001CF569E9 (uncharacterized protein LOC114972847 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF569E9)

HSP 1 Score: 111 bits (278), Expect = 3.340e-23
Identity = 67/168 (39.88%), Postives = 95/168 (56.55%), Query Frame = 1
Query:    1 TQVSCDKVWQTDAQHALWSPYKETYTLRLLIGVTPAGAICYVSDAYAGRTSDMELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPSKRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDNVGVVALI---CAALVN 495
            T++  +K    +AQ   +S YK T TL+ L+G+TP+G++C++SD Y G  SD E+  + G ID+L+R      G   MADRGFN I  ML + G+    PP       Q TE++   TR +  LRIHV+RAI  +K + ILD  F    L   G++ +I   CA L N
Sbjct:  359 TEIYIEKPSNPEAQQLTFSTYKNTNTLKALVGITPSGSVCFISDLYGGCISDKEITSKSGFIDKLQR------GDEVMADRGFN-IQEMLASKGVKVNVPPFMNQSG-QFTEQEMLATRRIATLRIHVERAIERIKNYHILD--FIPTTLCKSGLIDMIFFVCAMLTN 516          
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Match: A0A6P4YBZ2_BRABE (uncharacterized protein LOC109471736 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YBZ2_BRABE)

HSP 1 Score: 105 bits (262), Expect = 6.170e-22
Identity = 59/166 (35.54%), Postives = 90/166 (54.22%), Query Frame = 1
Query:    1 TQVSCDKVWQTDAQHALWSPYKETYTLRLLIGVTPAGAICYVSDAYAGRTSDMELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPSKRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDNVGVVALICAALVNL 498
            T++  +     D+Q   WS YK+  TL+ LIG+TP GA+ ++S+ + GR SD  +  + G +D++E         + MADRGFN I   LL        PP  R G+ Q +  D   T+ + N+RIHV+RAI  +K +RIL  +     + +   +  ICAA+ NL
Sbjct:  166 TEIFIETPKNLDSQAVTWSDYKKHNTLKFLIGITPNGAVSFLSECWGGRASDRHITLESGFLDKVEPHD------NIMADRGFN-IQEDLLFRQASLTIPPGAR-GKSQMSRGDVERTKRIANVRIHVERAIQRVKTFRILKNELPISMIPHADELVTICAAICNL 323          
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Match: UPI001E27792D (uncharacterized protein LOC123677654 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E27792D)

HSP 1 Score: 106 bits (265), Expect = 9.040e-22
Identity = 57/171 (33.33%), Postives = 93/171 (54.39%), Query Frame = 1
Query:    1 TQVSCDKVWQTDAQHALWSPYKETYTLRLLIGVTPAGAICYVSDAYAGRTSDMELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPSKRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDNVGVVALICAALVNLTHEPF 513
            T++  +K      Q +  S YK   T R +IGVTP G +C++S+ Y GRTS+ E++   G++++LE       G   MAD+GF +I+  L +I +    PP      +Q T+ED  +TRD+ ++R+HV+R I  +K  RIL     +   D +  + ++C  L N    P+
Sbjct:  262 TEIFIEKPSDYTVQSSTCSVYKAHNTTRGIIGVTPNGFVCFISELYPGRTSEREIILNSGLLEKLE------PGDSVMADKGF-TISKELADIDVDLNIPPFSYGNNQQFTDEDETLTRDIASVRVHVERIIRNVKLNRILRCSIPNTMADQLNQIWVVCCHLTNFRKNPW 425          
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Match: UPI001F5EE731 (uncharacterized protein LOC124806268 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5EE731)

HSP 1 Score: 99.8 bits (247), Expect = 2.780e-21
Identity = 61/164 (37.20%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   34 DAQHALWSPYKETYTLRLLIGVTPAGAICYVSDAYAGRTSDMELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPSKRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDNVGVVALICAALVNLTHEPFACLD 525
            D   +  S YK  YT++ L+G+TP GAI ++S+ Y GR SD+ +V+ CGI+  L+       G   +ADRGF +I             PPSKRT   Q T  D   T  + N+RI+V++AIG MK +RIL  +     L     +  +CA L N    P  C+D
Sbjct:   27 DTAASCCSNYKHHYTVKYLVGITPNGAIFFLSNCYGGRASDVFIVKDCGILKFLQ------PGDQVIADRGFLAI-------------PPSKRTNL-QMTSNDVRETSKIANVRIYVEQAIGRMKNFRILKNELPVTLLPLCDNIITVCAVLTNFM--PHLCID 168          
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Match: UPI001E27819F (uncharacterized protein LOC123681358 n=3 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E27819F)

HSP 1 Score: 102 bits (255), Expect = 3.170e-21
Identity = 56/170 (32.94%), Postives = 94/170 (55.29%), Query Frame = 1
Query:    1 TQVSCDKVWQTDAQHALWSPYKETYTLRLLIGVTPAGAICYVSDAYAGRTSDMELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPSKRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDNVGVVALICAALVNLTHEP 510
            T++  +K      Q + +S YK   T R +IG+TP G +C++S+ Y GRTS+ME++   G++++LE       G   MAD+GF +I+  L +I +    PP      +Q T+ D  +TRD++ +R+HV+R I  +K  RIL     +   D +  + ++C  L N   +P
Sbjct:  123 TEIFIEKPSDYTVQSSTYSVYKAHNTARGIIGITPNGFVCFISELYPGRTSEMEIILNSGLLEKLE------PGDSVMADKGF-TISKELADIDVDLNIPPFSYGNNQQFTDADETLTRDIS-VRVHVERIIRNVKLNRILCCSIPNTMADQLNQIWVVCCHLTNFRKKP 284          
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Match: A0A2B4RDF2_STYPI (Uncharacterized protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RDF2_STYPI)

HSP 1 Score: 104 bits (260), Expect = 4.670e-21
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 1
Query:    1 TQVSCDKVWQTDAQHALWSPYKETYTLRLLIGVTPAGAICYVSDAYAGRTSDMELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPSKRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDNVGVVALICAALVN 495
            T+   +K    DAQ A +S YK T T++ L+G+TP+G +C+VS+ + G TSD+E+  Q G + +L+R      G   MAD+GFN     L ++G+  V P   +  ++ ST+E     + + +LR+HV+R +  +K W I D K           + ++ AAL N
Sbjct:  280 TEFQMEKPSSLDAQSACYSSYKSTNTMKALLGITPSGVVCFVSELFPGSTSDLEITMQSGFLGKLKR------GDEVMADKGFN-CQDELASVGVVLVKPNFLKDKKQFSTKETEH-NKTIASLRVHVERLMERIKNWHIFDRKIPISMSPVASDILIVVAALSN 436          
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Match: A0A2B4S6L7_STYPI (Uncharacterized protein n=3 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S6L7_STYPI)

HSP 1 Score: 104 bits (260), Expect = 5.350e-21
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 1
Query:    1 TQVSCDKVWQTDAQHALWSPYKETYTLRLLIGVTPAGAICYVSDAYAGRTSDMELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPSKRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDNVGVVALICAALVN 495
            T+   +K    DAQ A +S YK T T++ L+G+TP+G +C+VS+ + G TSD+E+  Q G + +L+R      G   MAD+GFN     L ++G+  V P   +  ++ ST+E     + + +LR+HV+R +  +K W I D K           + ++ AAL N
Sbjct:  297 TEFQMEKPSSLDAQSACYSSYKSTNTMKALLGITPSGVVCFVSELFPGSTSDLEITMQSGFLGKLKR------GDEVMADKGFN-CQDELASVGVVLVKPNFLKDKKQFSTKETEH-NKTIASLRVHVERLMERIKNWHIFDRKIPISMSPVASDILIVVAALSN 453          
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Match: UPI00077ACDDF (uncharacterized protein LOC107345859 n=2 Tax=Acropora TaxID=6127 RepID=UPI00077ACDDF)

HSP 1 Score: 100 bits (249), Expect = 7.330e-21
Identity = 55/166 (33.13%), Postives = 90/166 (54.22%), Query Frame = 1
Query:    1 TQVSCDKVWQTDAQHALWSPYKETYTLRLLIGVTPAGAICYVSDAYAGRTSDMELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPSKRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDNVGVVALICAALVNL 498
            T++  +       + A WS YK   T ++L+ +TP GA  +VS A+ GRTSD+ + R+    D  E           MADRGF     ++L     ++ PP +R G+EQ ++ +   T+   NLRI+V++AI  +K +R++  +     L+N+  + L+CAAL NL
Sbjct:   73 TEIFIETPSNPTVRAATWSDYKHHNTAKVLVSITPNGAFNFVSKAWRGRTSDVNVTREPSFYDMCEPHD------EVMADRGFTIAEDLILRRCKLHI-PPGRR-GKEQFSKAEVNKTKKTANLRIYVEQAIRRLKTFRLIKNELPISLLNNIDAIVLVCAALCNL 230          
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Match: A0A147BPM8_IXORI (Putative is4eu-1 dr (Fragment) n=2 Tax=Ixodes TaxID=6944 RepID=A0A147BPM8_IXORI)

HSP 1 Score: 102 bits (254), Expect = 7.560e-21
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = 1
Query:   37 AQHALWSPYKETYTLRLLIGVTPAGAICYVSDAYAGRTSDMELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPSKRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDNVGVVALICAALVNLTHE 507
            A+   +S YK T T++ LIGVTP GA+ ++S A+AGR SD +L ++ G++D+LE       G   +ADRGF  I   +  +G   V P   R G+ Q   ++    R ++ +RIHV+RAIG +K +RIL  +     L +   + LIC+ + NL  +
Sbjct:  176 ARSQTYSHYKGTNTIKFLIGVTPCGAVSFISKAWAGRVSDKKLTQKSGLLDKLE------SGDTVLADRGF-LIREDIGRVGATLVVPAFTR-GKRQLPAQEVETARQMSKIRIHVERAIGRIKVFRILQDRLPITLLRHATNILLICSGITNLKRK 324          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig899.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F5E449C1.920e-2338.41uncharacterized protein LOC124816325 n=1 Tax=Hydra... [more]
UPI001CF569E93.340e-2339.88uncharacterized protein LOC114972847 n=1 Tax=Acrop... [more]
A0A6P4YBZ2_BRABE6.170e-2235.54uncharacterized protein LOC109471736 n=1 Tax=Branc... [more]
UPI001E27792D9.040e-2233.33uncharacterized protein LOC123677654 n=1 Tax=Harmo... [more]
UPI001F5EE7312.780e-2137.20uncharacterized protein LOC124806268 n=1 Tax=Hydra... [more]
UPI001E27819F3.170e-2132.94uncharacterized protein LOC123681358 n=3 Tax=Harmo... [more]
A0A2B4RDF2_STYPI4.670e-2133.94Uncharacterized protein n=1 Tax=Stylophora pistill... [more]
A0A2B4S6L7_STYPI5.350e-2133.94Uncharacterized protein n=3 Tax=Stylophora pistill... [more]
UPI00077ACDDF7.330e-2133.13uncharacterized protein LOC107345859 n=2 Tax=Acrop... [more]
A0A147BPM8_IXORI7.560e-2136.94Putative is4eu-1 dr (Fragment) n=2 Tax=Ixodes TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig899contigP-littoralis_Contig899:52090..53271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7668.SPU_024105-tr
PFAMsDDE_Tnp_4,HTH_Tnp_4,THAP
Model size1182
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.28e-13
EggNOG OGs2CQK3@1|root,2S458@2759|Eukaryota,3A7MN@33154|Opisthokonta,3BSRK@33208|Metazoa,3DFYF@33213|Bilateria
DescriptionDDE superfamily endonuclease
Cds size372
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791786.8054712-UTR-P-littoralis_Contig899:52089..522451680791786.8054712-UTR-P-littoralis_Contig899:52089..52245Pylaiella littoralis U1_48UTRP-littoralis_Contig899 52090..52245 +
1680791786.8347611-UTR-P-littoralis_Contig899:52617..532711680791786.8347611-UTR-P-littoralis_Contig899:52617..53271Pylaiella littoralis U1_48UTRP-littoralis_Contig899 52618..53271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791786.8174095-CDS-P-littoralis_Contig899:52245..526171680791786.8174095-CDS-P-littoralis_Contig899:52245..52617Pylaiella littoralis U1_48CDSP-littoralis_Contig899 52246..52617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig899.18.1prot_P-littoralis_Contig899.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig899 52246..52617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig899.18.1

>prot_P-littoralis_Contig899.18.1 ID=prot_P-littoralis_Contig899.18.1|Name=mRNA_P-littoralis_Contig899.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MELVRQCGIIDELEREGFGGQGMHAMADRGFNSIAPMLLNIGMHYVAPPS
KRTGEEQSTEEDAGITRDVTNLRIHVKRAIGAMKQWRILDTKFDSQQLDN
VGVVALICAALVNLTHEPFACLD*
back to top

mRNA from alignment at P-littoralis_Contig899:52090..53271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig899.18.1 ID=mRNA_P-littoralis_Contig899.18.1|Name=mRNA_P-littoralis_Contig899.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1182bp|location=Sequence derived from alignment at P-littoralis_Contig899:52090..53271+ (Pylaiella littoralis U1_48)
ACACAAGTCTCGTGTGATAAGGTCTGGCAGACGGACGCTCAGCACGCGCT GTGGTCTCCTTACAAGGAAACGTACACATTGAGACTCCTCATAGGCGTTA CCCCCGCGGGTGCCATCTGCTACGTGTCCGATGCGTATGCTGGTCGAACG AGTGACATGGAGTTAGTAAGACAGTGCGGCATCATAGATGAGTTGGAGCG CGAGGGTTTCGGAGGGCAAGGAATGCATGCCATGGCTGACCGAGGGTTTA ACTCAATAGCGCCGATGCTCCTCAACATCGGCATGCACTACGTTGCACCT CCTAGTAAACGCACGGGTGAGGAGCAGTCCACGGAGGAGGACGCCGGTAT CACTAGAGACGTGACGAACCTTCGCATCCACGTAAAACGAGCGATCGGAG CCATGAAGCAGTGGCGTATTTTGGACACGAAATTTGACTCGCAGCAGTTG GACAACGTTGGGGTAGTTGCTCTTATTTGCGCGGCGTTGGTCAATCTCAC ACATGAGCCCTTTGCGTGCCTGGATTGATGGCTTTTTCATATTTGCAAGT TCGTTGCGGGGTCCTTACCGTGTGCGCCGAAAATGTCCGTTGTGAGACTG CAACAATGGGTGAAGCTGAACTTGTTTTGCAGGGGTTCTCTTGCAGCGGT GGTGTAGATGCTGTAGTGTCCGTCATCTTGTCTGGCGGTGTGGCCGGATG GGGATTCAAACGTATAGTGGCGTAAGAGTCTTCGATGAATGAATGGAGCG GGTTACTGAGCAGAAAAGAAAAAAAAAATCAAGATGAGGCCCGTTCCAAG GGCGTAATGCTTTTATTTGTGCGTAGAATTTTTCAAAATATGAACGGCAT CCTGTGTTGAGGAAGTCAAATGACGTTTGCTAAATCCCTCTGGGTGGCCC ACTTTTTACACAGATAGGAATTGACCACGCGGCGACAAGCCCCACGTGCC CCCCAGAGCAAACAGTCATGACCCACTCACGCAAGGGCGAGGTGCAAAGG TCGCACCACTGAAGAATTGTCGACGTGGCAGGATGAAATTACCCCCGAAC ACAAAAAAAAAACCGATTTGTATGAAATTATTTTACTGTGGGCTATATGT ACCCATATATATTGTGTAAGGTCAACCGACGGAAAGCCGAAATTCGCCGT CATGAAATACCTGGATTCCTCACGTCACCGAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig899:52090..53271+

>mRNA_P-littoralis_Contig899.18.1 ID=mRNA_P-littoralis_Contig899.18.1|Name=mRNA_P-littoralis_Contig899.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig899:52090..53271+ (Pylaiella littoralis U1_48)
ATGGAGTTAGTAAGACAGTGCGGCATCATAGATGAGTTGGAGCGCGAGGG
TTTCGGAGGGCAAGGAATGCATGCCATGGCTGACCGAGGGTTTAACTCAA
TAGCGCCGATGCTCCTCAACATCGGCATGCACTACGTTGCACCTCCTAGT
AAACGCACGGGTGAGGAGCAGTCCACGGAGGAGGACGCCGGTATCACTAG
AGACGTGACGAACCTTCGCATCCACGTAAAACGAGCGATCGGAGCCATGA
AGCAGTGGCGTATTTTGGACACGAAATTTGACTCGCAGCAGTTGGACAAC
GTTGGGGTAGTTGCTCTTATTTGCGCGGCGTTGGTCAATCTCACACATGA
GCCCTTTGCGTGCCTGGATTGA
back to top