mRNA_P-littoralis_Contig899.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig899.1.1
Unique NamemRNA_P-littoralis_Contig899.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Match: UPI001D2F14B2 (hypothetical protein n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001D2F14B2)

HSP 1 Score: 71.6 bits (174), Expect = 2.010e-14
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 GMAEVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIHLF 159
            G  EV  P+  ID+LT N++IEVKH ++W  A+GQ+++Y YHYP+  KRIHLF
Sbjct:   76 GQTEVRVPSGRIDILTSNQIIEVKHIKKWNAALGQVITYGYHYPNHQKRIHLF 128
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BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Match: K9VSH3_9CYAN (Uncharacterized protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=K9VSH3_9CYAN)

HSP 1 Score: 72.8 bits (177), Expect = 3.540e-14
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 GMAEVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIHLF 159
            G  EVL PA SIDLLT +++IEVKH + WKTAIGQ++ Y  +YPS  KRIHLF
Sbjct:  168 GETEVLTPAGSIDLLTTSQLIEVKHIKNWKTAIGQVLVYSAYYPSHEKRIHLF 220
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BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.140e-11
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 GMAEVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIHLF 159
            G  E   PA SID+ TR+EVIE+KH++ WK+ +GQ+ +Y  H+PS  +R+HLF
Sbjct:  677 GQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKQRLHLF 729
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BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Match: UPI00036DC0B9 (hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI00036DC0B9)

HSP 1 Score: 62.8 bits (151), Expect = 2.010e-10
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 GMAEVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIHLF 159
            G  EV  PA  IDLLT  ++IEVK  + WK AIGQ+ +Y  +YPS  KRIHLF
Sbjct:  166 GETEVFTPAGLIDLLTAEQLIEVKEVKRWKCAIGQVETYGDYYPSHQKRIHLF 218
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BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Match: UPI001E5765A7 (hypothetical protein n=1 Tax=Nostoc sp. CHAB 5834 TaxID=2780403 RepID=UPI001E5765A7)

HSP 1 Score: 59.7 bits (143), Expect = 1.410e-9
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 GMAEVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIHLF 159
            G  EV+     IDLLT N+VIEVK   +WK A+GQ++SY   +P   KRIHLF
Sbjct:  101 GQTEVVTAVGRIDLLTENQVIEVKACPDWKAALGQVLSYSAFFPEHQKRIHLF 153
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BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Match: L7RE44_9VIRU (KilA N-domain protein n=1 Tax=Acanthamoeba polyphaga moumouvirus TaxID=1269028 RepID=L7RE44_9VIRU)

HSP 1 Score: 59.3 bits (142), Expect = 3.780e-9
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 GMAEVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIHLF 159
            G  EV      IDLLT+N ++E+K Y  WK A+GQI++Y   YP + KRI+LF
Sbjct:  163 GTTEVPTSCGKIDLLTKNYIVEIKTYNNWKAALGQILAYSDQYPDKNKRIYLF 215
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BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.620e-9
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 GMAEVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIHLF 159
            G  E   P   ID+L+  EVIEVK+Y++W+ A+GQ+++Y  +YP   KR+HLF
Sbjct:  219 GETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLF 271
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BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Match: A0A1Z4KCX8_9CYAN (DNA-damage-inducible protein n=1 Tax=Calothrix brevissima NIES-22 TaxID=1973478 RepID=A0A1Z4KCX8_9CYAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.320e-8
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    1 GMAEVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIHLF 159
            G  EV  PA  IDLLT  ++IEVK    WK A+GQ+  Y  +YP   KRIHLF
Sbjct:  122 GTREVQTPAGFIDLLTDEQIIEVKKVNSWKAAVGQVEIYRDYYPFHEKRIHLF 174
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BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Match: UPI000B9C091D (hypothetical protein n=1 Tax=Hydrocoleum sp. CS-953 TaxID=1671698 RepID=UPI000B9C091D)

HSP 1 Score: 53.9 bits (128), Expect = 3.630e-8
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   10 EVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIHLF 159
            EV  P   ID+LT ++VIEVK+ R++K AIGQ++SY ++YP   + I+LF
Sbjct:   11 EVPTPTGKIDILTSSKVIEVKNVRQYKYAIGQVLSYSHYYPKHERCIYLF 60
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BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Match: A0A835YNY8_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.070e-8
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 GMAEVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIHLF 159
            G  EV   A   D++T  EVIE+KH+R WK A+GQ+++Y      ++KRIHLF
Sbjct:   69 GNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLF 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig899.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D2F14B22.010e-1454.72hypothetical protein n=1 Tax=Waterburya agarophyto... [more]
K9VSH3_9CYAN3.540e-1464.15Uncharacterized protein n=2 Tax=Oscillatoriales Ta... [more]
D7G3S0_ECTSI3.140e-1150.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00036DC0B92.010e-1056.60hypothetical protein n=1 Tax=Oscillatoria sp. PCC ... [more]
UPI001E5765A71.410e-952.83hypothetical protein n=1 Tax=Nostoc sp. CHAB 5834 ... [more]
L7RE44_9VIRU3.780e-949.06KilA N-domain protein n=1 Tax=Acanthamoeba polypha... [more]
A0A6H5L807_9PHAE8.620e-947.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z4KCX8_9CYAN1.320e-852.83DNA-damage-inducible protein n=1 Tax=Calothrix bre... [more]
UPI000B9C091D3.630e-850.00hypothetical protein n=1 Tax=Hydrocoleum sp. CS-95... [more]
A0A835YNY8_9STRA4.070e-847.17FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig899contigP-littoralis_Contig899:16919..17077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog56107.Cylst_5207
Model size159
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.14e-09
EggNOG OGs2EUDG@1|root,30I2H@2|Bacteria,1GKHJ@1117|Cyanobacteria,1HQ93@1161|Nostocales
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791786.7568526-UTR-P-littoralis_Contig899:16918..169211680791786.7568526-UTR-P-littoralis_Contig899:16918..16921Pylaiella littoralis U1_48UTRP-littoralis_Contig899 16919..16921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791786.7708657-CDS-P-littoralis_Contig899:16921..170771680791786.7708657-CDS-P-littoralis_Contig899:16921..17077Pylaiella littoralis U1_48CDSP-littoralis_Contig899 16922..17077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig899.1.1prot_P-littoralis_Contig899.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig899 16922..17077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig899.1.1

>prot_P-littoralis_Contig899.1.1 ID=prot_P-littoralis_Contig899.1.1|Name=mRNA_P-littoralis_Contig899.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MAEVLCPASSIDLLTRNEVIEVKHYREWKTAIGQIMSYWYHYPSRTKRIH
LF
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mRNA from alignment at P-littoralis_Contig899:16919..17077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig899.1.1 ID=mRNA_P-littoralis_Contig899.1.1|Name=mRNA_P-littoralis_Contig899.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig899:16919..17077+ (Pylaiella littoralis U1_48)
GGGATGGCAGAAGTGCTCTGTCCGGCAAGCTCGATCGATCTGCTCACGAG
AAACGAGGTCATCGAAGTGAAACACTACCGAGAGTGGAAAACCGCTATAG
GCCAAATTATGTCATATTGGTACCACTACCCTTCTCGAACAAAACGAATC
CATTTATTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig899:16919..17077+

>mRNA_P-littoralis_Contig899.1.1 ID=mRNA_P-littoralis_Contig899.1.1|Name=mRNA_P-littoralis_Contig899.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig899:16919..17077+ (Pylaiella littoralis U1_48)
ATGGCAGAAGTGCTCTGTCCGGCAAGCTCGATCGATCTGCTCACGAGAAA
CGAGGTCATCGAAGTGAAACACTACCGAGAGTGGAAAACCGCTATAGGCC
AAATTATGTCATATTGGTACCACTACCCTTCTCGAACAAAACGAATCCAT
TTATTC
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