mRNA_P-littoralis_Contig899.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig899.14.1
Unique NamemRNA_P-littoralis_Contig899.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig899.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig899contigP-littoralis_Contig899:43123..43681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size559
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791786.6637979-CDS-P-littoralis_Contig899:43122..436741680791786.6637979-CDS-P-littoralis_Contig899:43122..43674Pylaiella littoralis U1_48CDSP-littoralis_Contig899 43123..43674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791786.6785715-UTR-P-littoralis_Contig899:43674..436811680791786.6785715-UTR-P-littoralis_Contig899:43674..43681Pylaiella littoralis U1_48UTRP-littoralis_Contig899 43675..43681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig899.14.1prot_P-littoralis_Contig899.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig899 43123..43674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig899.14.1

>prot_P-littoralis_Contig899.14.1 ID=prot_P-littoralis_Contig899.14.1|Name=mRNA_P-littoralis_Contig899.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
MSAWRRRGGEKQFRCVARHIFFCSLRQAHVAGMDIWRLAITADSWVSTIF
HKRAVYTRCMWRVFCVQREESKATKVQLIDSVNLVLLCNVLHDLQHCFGG
DGVRKKKYDNGPGGQLRTGSSGMFLNLKKGGLFLTDSVLHNLINKTRKTV
GKPYTIDYIHRKYFVSPGSPSSMIGGSGCGGARG
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mRNA from alignment at P-littoralis_Contig899:43123..43681-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig899.14.1 ID=mRNA_P-littoralis_Contig899.14.1|Name=mRNA_P-littoralis_Contig899.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=559bp|location=Sequence derived from alignment at P-littoralis_Contig899:43123..43681- (Pylaiella littoralis U1_48)
CGGAAAGATGTCTGCTTGGAGGAGGAGGGGAGGTGAGAAACAGTTCCGAT
GTGTTGCACGTCACATTTTTTTTTGCTCTCTCAGACAAGCTCACGTTGCT
GGTATGGACATTTGGAGGCTTGCCATCACAGCAGATAGCTGGGTATCGAC
GATCTTTCATAAAAGAGCTGTCTACACGCGTTGTATGTGGCGCGTGTTCT
GTGTCCAGAGAGAGGAATCGAAAGCTACAAAAGTTCAGTTAATAGATTCT
GTGAATCTGGTTCTTCTGTGCAATGTCCTGCATGATTTGCAACACTGCTT
TGGCGGTGATGGCGTGCGAAAAAAAAAATATGACAACGGCCCGGGCGGGC
AGTTACGAACCGGCAGCAGCGGCATGTTCCTCAACTTGAAGAAAGGCGGG
CTTTTCCTGACAGACAGTGTTTTACATAACTTGATAAACAAAACTCGAAA
AACAGTGGGGAAACCTTACACTATAGACTATATCCATCGAAAATACTTTG
TATCCCCGGGCTCCCCCTCTTCCATGATAGGGGGCAGTGGCTGCGGGGGT
GCGAGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig899:43123..43681-

>mRNA_P-littoralis_Contig899.14.1 ID=mRNA_P-littoralis_Contig899.14.1|Name=mRNA_P-littoralis_Contig899.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig899:43123..43681- (Pylaiella littoralis U1_48)
ATGTCTGCTTGGAGGAGGAGGGGAGGTGAGAAACAGTTCCGATGTGTTGC
ACGTCACATTTTTTTTTGCTCTCTCAGACAAGCTCACGTTGCTGGTATGG
ACATTTGGAGGCTTGCCATCACAGCAGATAGCTGGGTATCGACGATCTTT
CATAAAAGAGCTGTCTACACGCGTTGTATGTGGCGCGTGTTCTGTGTCCA
GAGAGAGGAATCGAAAGCTACAAAAGTTCAGTTAATAGATTCTGTGAATC
TGGTTCTTCTGTGCAATGTCCTGCATGATTTGCAACACTGCTTTGGCGGT
GATGGCGTGCGAAAAAAAAAATATGACAACGGCCCGGGCGGGCAGTTACG
AACCGGCAGCAGCGGCATGTTCCTCAACTTGAAGAAAGGCGGGCTTTTCC
TGACAGACAGTGTTTTACATAACTTGATAAACAAAACTCGAAAAACAGTG
GGGAAACCTTACACTATAGACTATATCCATCGAAAATACTTTGTATCCCC
GGGCTCCCCCTCTTCCATGATAGGGGGCAGTGGCTGCGGGGGTGCGAGGG
GG
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