mRNA_P-littoralis_Contig899.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig899.21.1
Unique NamemRNA_P-littoralis_Contig899.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig899.21.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 8.830e-10
Identity = 34/62 (54.84%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:  217 GIEGSNSNGAVCCPLGCNQCGGSNCPWSGSAAGLTRRQCCINGVLRSGGAGDCGVTMTAPYI 402
            G+EG + NG VCCPL CNQCGG+ C  SGSAAGL    CC  G+  SG    C  T  AP I
Sbjct:  548 GLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAY--CDDTNEAPCI 607
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BLAST of mRNA_P-littoralis_Contig899.21.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.540e-8
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:  217 GIEGSNSNGAVCCPLGCNQCGGSNCPWSGSAAGLTRRQCCINGVLRSGGAGDCGVTMTAPYI 402
            G++G + NG VCCP+ CNQCGGS C  +G AAGL    CC +GV  SG    C  T  AP I
Sbjct:  530 GVQGIDGNGIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRY--CDDTDEAPCI 589
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BLAST of mRNA_P-littoralis_Contig899.21.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.100e-8
Identity = 31/60 (51.67%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:  217 GIEGSNSNGAVCCPLGCNQCGGSNCPWSGSAAGLTRRQCCINGVLRSGGAGDCGVTMTAP 396
            GIEG + NGAVCCPLGC QCGG+ C  +G+A GL    CC   +  SG    C  T  AP
Sbjct:   85 GIEGIDGNGAVCCPLGCGQCGGTGCTSAGAANGLDSGSCCGGSIKSSGNY--CDDTGEAP 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig899.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQV4_ECTSI8.830e-1054.84Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
D7FUJ9_ECTSI2.540e-851.61Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
A0A6H5K5M2_9PHAE4.100e-851.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig899contigP-littoralis_Contig899:68410..75393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size530
Hectar predicted targeting categoryother localisation
Exons3
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791786.5311599-UTR-P-littoralis_Contig899:68409..684851680791786.5311599-UTR-P-littoralis_Contig899:68409..68485Pylaiella littoralis U1_48UTRP-littoralis_Contig899 68410..68485 +
1680791786.575036-UTR-P-littoralis_Contig899:75215..753931680791786.575036-UTR-P-littoralis_Contig899:75215..75393Pylaiella littoralis U1_48UTRP-littoralis_Contig899 75216..75393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791786.5439556-CDS-P-littoralis_Contig899:68485..685091680791786.5439556-CDS-P-littoralis_Contig899:68485..68509Pylaiella littoralis U1_48CDSP-littoralis_Contig899 68486..68509 +
1680791786.5540838-CDS-P-littoralis_Contig899:74427..745141680791786.5540838-CDS-P-littoralis_Contig899:74427..74514Pylaiella littoralis U1_48CDSP-littoralis_Contig899 74428..74514 +
1680791786.5641222-CDS-P-littoralis_Contig899:75050..752151680791786.5641222-CDS-P-littoralis_Contig899:75050..75215Pylaiella littoralis U1_48CDSP-littoralis_Contig899 75051..75215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig899.21.1prot_P-littoralis_Contig899.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig899 68486..75215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig899.21.1

>prot_P-littoralis_Contig899.21.1 ID=prot_P-littoralis_Contig899.21.1|Name=mRNA_P-littoralis_Contig899.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
METLEKKKLPLLPPSVQLPLQFPLRLLLSLPLPRPSKVPRALAWASPESK
DRTVMAPFAARLGATNAVAAIALGPGVPQVSQGGNAVSMGC*
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mRNA from alignment at P-littoralis_Contig899:68410..75393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig899.21.1 ID=mRNA_P-littoralis_Contig899.21.1|Name=mRNA_P-littoralis_Contig899.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6984bp|location=Sequence derived from alignment at P-littoralis_Contig899:68410..75393+ (Pylaiella littoralis U1_48)
GATTACCAGGGAATAATAGAGCTGGGATGACGGTTGCCGGGGGAATCAAG
AGGGGCAGTATCGGTGAAGAGGAAACATGGAAACGTTGGAAAAGAAGAAA
GTAGGTCGGGTAATGCAAGAAACCGTCGCTGTGAGTCTCAAATATGCGTT
TCGAGGCCTGCACATGCGTTTCACTCCTGTCGCGCCTTGACTCTAACCCA
CTCAACAAAACGCTAACCCTTATAATTTCGTTTCGACGATTGTTTGTTCT
TTTCACTTCTCCCCCGGGTGTTCATATTCTTCTTCAAATGCCGCAACAAC
TGGCCCGGCGCCGGACCTTCCCCTACCGAAACCTTGTTCGATGCTTCTAG
TCGGTGCTCCACTGCCTCAAGCAGAGAAGCTATGATGAGTCTTGTTTAAC
ACGTTTTATTAGGACACAGAAACAGAAAGAAAGAGGAGTGAGCTAGGCTC
CAAGAATCACACATCCCAAAACTAGCCCAAGCTCACTGTAAATGCGGTGC
AACACCAACCACAAAGGGAAGCACCTCATTGGTCCAAACATGAAACCGTC
AAAGCAGATCCAAATATATTCGTCCTCCGACAAGAACACCTTGGACGACG
AACACCCTCCCTGGTTCTTCACGCAAGTGGAAAACCATCAATTTTGGGGA
TATGCTTCCCCTGGATGATACTAAAACGCCAAGGCGGTGCAAGGGGAAAA
CTGGACCCGCCGATCAAAAACCCCAAGTCTAAAAATCCGACAAATAAAAA
CCGTCGCTATCCCGGAGGATTCCAACGGCCGCACTCCCAAGGCGAGCAGG
TCAAGCTAAAACTGAAAAATAAACGCCAGCACGCTGGATTACTCACCCTG
CGCCTATTTGCTTCGGGAGACGTGCGTAACATTTACCCGCTTGAAACTAC
TGGCCCGGTGCTTGAATGCAGTACCCTATTCCAAAATGTTCATCAAACAC
TTACGGTGGTTCTGGAAGGCAACCCTTGCAAGAGCCTTTGTAAGGATATC
TGCGTGCTGATCATCTGACTTTACGTACTCTACGCTGATTTTACGCATCC
TGAATAAATCGCGGATGAAGTGGAAACGCACGTCGATGTGCTTGCTCCTG
GCGGAGCTCAGAGGGTTCTCAATCAACGCCTTTGCCCCCTGGTTGTCCTC
AAGGACTTTGATACTCGCCCCACACGTCTCGGGCGCAATGAAAGACAAAA
CGGCATTGACAAAAAGAGCCTCCTTGACCCCGTCCCCAGCTGCAATGTAC
TCTGCCTCGGAGGTCGACAACGACACGACGTGCTGCGTCTTGCTCGCGTG
GCTCACAACAGTGCCTCCCAAAGTTACTGCCACCCCCGATACCGAACGTC
TGTCATTCGCTTTACTGGCATAGTCGGAATCTGCGTACACCTCTAGACCA
AGACCCGACCCCCGTACGTAGGTAATACCGAGACTCCTTGTCCCGTTCAA
GTAAGCAAGGATTTTTCTGATCGACTTCCAAAGCCTTGCAGTCGGTGAGT
GAGCATACCGTGCTACCGCTCGTACAGCATTGGTTATGTCAGGCCTAGTC
ATCGTGGAGAGCCAAAGTAAGCTTCCGACGGGCTCTCTAACAGGCCAATC
CCCTCCCAACTCATCTTCTCGTTTGGGTCCTAGGTCATCGCCgGGGGAAG
CGGGGATGTCTGAAATTGATTCTACATCGAACCTGGTCATGAGACTCTCA
ACGTATGCCTCCTGTGATAATTTTATAGTACCTAACTCCATGTCTCGCTC
GATACCGCACCCATCGTACCAGGTGCACTCCCCCAGGTTTTTGGTGGGAA
ATTTCTTGTTGAGGGATACCAACAGCTCATCACAGTCGTTCTTTGATCCT
CCTACCAACAGGTCGTCCACGTACACTCCCACAATCATGACTACCACACC
ATCGATAATCTTGCGGAAAACACAAGGGTCAGCCTTGCACTGCTCGAAAC
CTTCTGCTATCAGAGTGTCTGCACACAAGTGACCCCACTTTCGGCCACTC
TGTTTGAGGCCGTAAATTGCCCTCTCTACTTGTGCTGTCTTCTTTGATTT
TTCCCCACAACCGTCGGGGAGCTTTAGGTATACTTCCTCGTCTAGCGATG
CCCTGATGTAGGCTTGCGCCACGTCAAAATGGTAAAGGGAAAGTCCCCGC
TCGTTTGCTACCGCTAGCACAAGTTTAATGGACGCTGCCGACGGGCAGGG
GGATGATGAGTGGGTGTAGTCCACGTTACGGATTTGTGTGAACCCTCGCG
CTACCAACCGCGCTTTCAGCTTCGTGATTCTACCCTCCTTATCTGTCTTG
TAGTCGAAACACCATTTTGATCCTACGGGCTTTCGCCCCTGCGGTATGCT
GTCTACCATTCTGAAGGTGCCTGTTTTCATGTGACCCTCGAACTCTATCT
GCATGGCCTGTTCCCAACCCTCTCGGTACATCGACAGCTCTACTTCAGCA
ACGTTACGTGGTAAAGATTCGACTTCATTGGGTTTCTTCCCGATCGGCAA
CGGGAAACTCAGCTCAGGGGGGTCTTCGGTCGCCATTGCGACAGGGCAGT
CCTCGCCTTGCTCCGTCACGTGCTGCTCCTCCCCCTCCCAGCTCTCCTCC
GGTATCATACAGCGGACGCGCTCAGTGTGTTGGCCGAACCCTCCCCCTTT
TCGCTCCGGGTGGTATTTGGCTGCCATTTCAAGCGGGTAGTCCGGCCCGC
TCTCCATCACGCACCAGGTGTCCATCCAATTGTCGAGGCGCGCCTCCTCC
TCCTCCAGGCGCTCCTCCAGCATCAACCAGCGGATACGCTCAGCGGCTTC
CTCCGCGTCATCCGAGCTCGTCCGGTTTGCCTCCCACTCGATCGCACACG
ATAGCAGAGCGTCCGCGGTCTCCGGGCGCAGTTCGTATTGCGATCGTGCC
TCGGACCGCGTGCGCCCGCCCTGGATGGCAGGTATCTTTCCGAAGAATGT
CTGACGATGGGCCTCTCCGCCCGCGAGTACTGGGACGTCGCTGCTGCTGA
TGCTGCTACTGCTGCCATTGCTGTTGCTGCTGCTGCTGCTGCTGCTGTTG
CTGCTGCTGCAGCTGTTGGAGCTGCTGCTGTTGTTGCGGCCACCGCTGCC
GCTTCCGCTGCCGCTACTGCTGCAGCCGCAGCTGCTGCTGTTCTCGGCCC
TCCCCGAGAAGGCCGATGGTGCCGGTGGGGTGCTGTCCGTGTCCCCACCG
GCCCCGCTAATGTTGCTGTCAACTGTTGCCGCCGGCGCTGCACGCCCTGC
GGGTGGCATAAGGAACCCAGCCTCTGTCACGTCGAGGCCGGACTCGCTGC
TCAAGTCGTCCACCCTCCCTCCGCCTTGACTTGACGCGCCCTCCCCGCTT
TCACCCTCCCCCGCTGCGGGCTCCCCCTCTTCGATGATAGGGGGCAGTGG
TGCTCTGGTGTGAGTCGACCTCGCGATGGGCTTCCGTAGCCCTTTTGCCA
GTGAACACCCCCGGCACTCGTGGAGCTCCCCGCTATGGGCGAGGCCTTGC
TGCTCTGCCGTCTTCTTCAGCAGTACCTCGTGAGTGTGGCCAAACGTACA
GTGGAGAACGTTGATGTCTGCGGGGGTGGTGGGGGCTTTGGCCCTACCAG
GCGCGATGATGGCACAAGCAGTGTCTACCGAACTACCTGTCGCCTCGGGG
CGGTACCCGAACTGGCGATAAAGCTTGCCGACCAGGGGGAAAAATACAGT
TTCTCCCCCGTCAAGCTTGAGAGTGATTCCGTCTTTGTCACCCGTGTAGG
TGTGGCCTTTTAGAGCCATGAACGGGAGGGATATTAGGTGGTAGTGCAAG
AGGGGGGCGTGGGCTACCTCGTGTAGTTCAACTCTAACCCACCCGTTGTC
GGTACGGAGATTTACCGTGAGGTCACCGTACCCTACGATAGAAATCTCCC
CCCCTCCTGCGAGACCCAAAGGTCGACTACTCTCTCGGTAGTTAGTAAGA
CCGTCGGCGTCCGGCGTCATGTTACATGTTGCCGCGCTATCAGCGATGAA
CGACACGACCTGCTTGCCCAGCGCCCCACCCCCAACATCACTACCGTTCA
TCACACTGTACTTGCCTGAATTATCCGCTGCCGCGAACGCCAGGGCATCG
ACGGCGGTGTCTTCATCAGATTCTGCACCCTCCACCACCAGCACTGCCTG
TTCGGAGATGCAGTCATCCGTCTTGTGGCCGAAGCCGCTGCACTTGGTGC
ACATGACGAGGAAGTCGCTCGGCTTGGTGGTGCAGGTCACCCGGTGATGG
CCCTGGTGGTTGCAGCGCCAGCACCGAGAGGGAGGGCGAAAGCTTCTACT
GCTACCACCGCTGCCGCTGGTGCCCTCACCTCCGCCAGGAGTACCGCCGC
TGCCGCCGCTACTACTACCTCTACCCCCACCGGAGTTGCCGCTGTTACTG
TTACTGCCGCCGCCGCTGCTGCTGCCGCCGCCGCCACCACTACCGCCGCC
GTGACTGCGATCACCGCTGCTGCGGCTACGGTTTTGGCCCCTGCCGCGGC
CGCCCCCACGTCCCCGTAGCGAACCGCCTCGCCCGCCTTTTTCACTCGAA
TAGAATGCCTGCTCGGGCGGCCGGGACGACCGCTGCGACCCGCTCTTCTG
GGGGATGTTGGAATATCTCGTTCCAACCCTCCGAATGATCTCCTCCCTGG
TTCGATCCTTCATGGACTGCAGGGTCTCCTTCGTGTGGGCATACTCGTCA
GGCAAGGCGGAGACGAAGCGAGCGTGTACCATGGGTTCAGGAACTCGTGG
TAGGCCTTTCTCCTGCATCCTGTTGTTGAGGTCTTCTAGCTCATGGAATG
CAGCAACCGGGTTCCCGTGAGCTGGTATTTTGAATTGGTGGAACTTTTCG
TACAGCCTCTGCGTGGCTATCTCACTCTCTGGGTCGTAGAACTGCTCGAG
GTAGTTGAACGCTTCTCTTGGTGACTTGCATCTCTGAAGTACCGCCCTGT
CTTCCTCCTTTTTCAGCGATTCGTCCAGAAAAGTCCATGCAAGACGGGCC
TCTCTTATCTCTCCCGCCGTGAAACCCTCTCTCAACAGGTCATCCTTGCG
TTTGGCCGGGTCTCCTACTGGAACCGCACGCGTCCCCTCTCCCACGAAGT
GCTGTGATATATCTAAGTGATTCGCCTTGAGGAGGAATTCATGCTTGAAT
AGTGGAAAGTCTCCCTTCTCAGCTCTCAGTACAGGTGGGTTCACTCGATG
TTGCTTGTCATGGCTACTCCTACTCTCAAAAGCTGCGGCTATACCTGTGG
GATATGAATCCCCCGCTTCGCCGCGTCGCTCCACCGTGTTGGTGATTGGG
CCCACGCCAGCGGGAACCGCCGGCCTCCTGCCCGAATCTTCAGCAGTTTG
TGACTCCTGGGACCACTCGCTCCCCTGGTATGCCCCAACTCCGCCTGTTG
TTCTTGCGGCTGCAGTAGCACTTTGACCAGTGCCCGCTGCTGCCTCCTCC
AGCGGCGCCCTCCTGGCGCCGCTGCTGTTGTCGTCGGCGACTCTCCCGCC
GGAGCCGCCTGACTCCTCTCCTTGTTGACCTCCCCCTCCTAGATTGGCCA
TCATCAGCTTCATCATCTCTTTTAGCTGCTGAATATCACTCTGTGTGTCT
GCAACTCTCAGTCGCAGTTCCTGTATTCCGTCGCTGTCGGGGTTTGCTCC
TTCTGAGCCGCCCCTGGCAGCGTCACTACCCGGCATGTTGACCGAAGCTC
CTTCGAAGGAAAACACTAGTGTGTTCGATGCTTCTAGTCGGTGCTCCACT
GCCTCAAGCAGAGAAGCTATGATGAGTCTTGTTTAACACGTTTTATTAGG
ACACAGAAACAGAAAGAAAGAGGAGTGAGCTAGGCTCCAAGAATCACACA
TCCCAAAACTAGCCCAAGCTCACTGTAAATGCGGTGCAACACCAACCACA
AAGGGAAGCACCTCATTGGTCCAAACATGAAACCGTCAAAGCAGATCCAA
ATATATTCGTCCTCCGACAAGAACACCTTGGACGACGAACAAACCTTCCA
CTCTATCGCCAACTCAAGCTCCCACTCCTGCCCCCATCAGTCCAGCTCCC
ACTCCAGTTCCCACTCCGGCTCCTACTCTCGCTCCCACTCCCGCGCCCAT
CGAAGGTGACGTTGCATCTATTTCCCATTTCTGATCCATTTACGCGTGCA
TGCCATATATACACTGCTGCGGCTTTCGAACGCGACGGCTGTGATGGCAT
AACAATCGAGCTGTGCGTTACATGGCGTGCTCTGACCGAGTGGTGGCATG
TATCCCCGCCCACGCTTTTGTTGCAAGTGCCCGTATTGAGCCGTCCTGGG
AGCAAAGAGGGTAACCAATGGCGGCTTGCAGTTGCGGGGCCGCCTAACCG
GACAAAACGTTTCGTGATCAGTCGCCTGTTTGCTGTTGGGGTCGGTAGCG
CCGGCCATCGTTTTCTGCGCTGCGCGAATATTCGTTAGCATCGGCAATGA
TAGTTGCTACACCTGTCCTGTGCTTAGCTATGTGCTCTATCCCGCTGAGG
CTCGCTTTGTTCGAATGACTCCAATACTAAACTGCACAAATGCGATCGAT
CCACTGCACTGACCTCTTGCAACACGGTCCCTTTGGTTTGTACGCCCGTC
ACTTCCAACGTGCCGATTGTGTACGACCTTCGTACATGTAGGTTCCACGT
GCTTTGGCCTGGGCATCCCCGGAATCGAAGGATCGAACAGTAATGGCGCC
GTTTGCTGCCCGCTTGGGTGCAACCAATGCGGTGGCAGCAATTGCCCTTG
GTCCGGGAGTGCCGCAGGTCTCACAAGGAGGCAATGCTGTATCAATGGGG
TGCTGAGATCGGGTGGGGCTGGAGACTGCGGCGTCACAATGACAGCCCCT
TACATTGGATCCTGGCTTGGATTCCAGCACCTTCCCGACTCGAACGAAGC
TGTTACGTGGCTTCGTGCGGGGTGCGCCGGGCTTGGTGTTGAGTGCGCCG
GGCTTGGTAGTGGGTGCGCCGGGCTTGGTAGGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig899:68410..75393+

>mRNA_P-littoralis_Contig899.21.1 ID=mRNA_P-littoralis_Contig899.21.1|Name=mRNA_P-littoralis_Contig899.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig899:68410..75393+ (Pylaiella littoralis U1_48)
ATGGAAACGTTGGAAAAGAAGAAACTCCCACTCCTGCCCCCATCAGTCCA
GCTCCCACTCCAGTTCCCACTCCGGCTCCTACTCTCGCTCCCACTCCCGC
GCCCATCGAAGGTTCCACGTGCTTTGGCCTGGGCATCCCCGGAATCGAAG
GATCGAACAGTAATGGCGCCGTTTGCTGCCCGCTTGGGTGCAACCAATGC
GGTGGCAGCAATTGCCCTTGGTCCGGGAGTGCCGCAGGTCTCACAAGGAG
GCAATGCTGTATCAATGGGGTGCTGA
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