mRNA_P-littoralis_Contig1209.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1209.42.1
Unique NamemRNA_P-littoralis_Contig1209.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1209.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1209contigP-littoralis_Contig1209:52854..53690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size358
Hectar predicted targeting categorymitochondrion
Exons2
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.8241513-CDS-P-littoralis_Contig1209:52853..531811680789517.8241513-CDS-P-littoralis_Contig1209:52853..53181Pylaiella littoralis U1_48CDSP-littoralis_Contig1209 52854..53181 +
1680789517.8351493-CDS-P-littoralis_Contig1209:53662..536881680789517.8351493-CDS-P-littoralis_Contig1209:53662..53688Pylaiella littoralis U1_48CDSP-littoralis_Contig1209 53663..53688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1209.42.1prot_P-littoralis_Contig1209.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1209 52854..53688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1209.42.1

>prot_P-littoralis_Contig1209.42.1 ID=prot_P-littoralis_Contig1209.42.1|Name=mRNA_P-littoralis_Contig1209.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
RRSGATARPPTAVHLPLPAGTKRQRRLPLLAPRSRHHGSIQLAAIQVTSN
TRELQVDTLARGVLATAAGLTATVIRATSPTRYGAITPAATTAAASRAPT
RAPALLDPTGPAAARRRD
back to top

mRNA from alignment at P-littoralis_Contig1209:52854..53690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1209.42.1 ID=mRNA_P-littoralis_Contig1209.42.1|Name=mRNA_P-littoralis_Contig1209.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=837bp|location=Sequence derived from alignment at P-littoralis_Contig1209:52854..53690+ (Pylaiella littoralis U1_48)
CGTCGAAGCGGAGCAACCGCACGGCCTCCAACGGCAGTGCATCTTCCTCT
TCCGGCCGGAACAAAAAGGCAGCGAAGGCTTCCTCTTCTAGCTCCAAGAA
GCCGGCACCACGGAAGCATACAGCTCGCGGCGATACAAGTGACGAGCAAC
ACCAGGGAACTTCAGGTGGACACACTCGCTCGAGGCGTACTCGCCACCGC
CGCGGGTCTGACAGCGACGGTGATTCGAGCGACAAGTCCAACACGATACG
GAGCTATCACTCCGGCAGCGACGACGGCGGCAGCGTCTCGAGCTCCCACA
CGAGCGCCAGCTCTACTAGACCCGACAGGCAAGTGACTCCTTCGCTAGAC
ACAGTTGCCTCCGGCAACCACGTTGCACTTGCCCGCAACGGTGCCATGGT
CGTCTACGACGGCGCGCAAAATGATAGGCCTCTCTCTTCGCGTGGGGCAA
GAGATCGCCAACAGGACATTGACGCTGACAATTTTAAACAGCAAGAGAAG
CACCACATTTCGGTAACTCGTAAATACCCAAGGACCGAGTTTAGAAATGT
CGAGCAGATCCATCCCCAGCTGCCTTTCCCTGCTTCTGTGAGCGCTAACA
GTAATGCATTAGGACAATTTTTGGATACTACCAAAAAGGCAATGGCAGAT
ATTCTCAGCCAAGCTGACCCTTTGCTTCTCTTCGAGAATTCTTCTGGATG
GGTTCGGGGCTGGGAAAGACCCATCCAGAAGTGCATCACCAAAACCATCC
CGCCGCGAACTGATGAAACAGCAAATTTGACCTCTGTTGTCACCACCCTA
TTCGACCAGGTCCGGCAGCGGCTCGACGAAGGGATGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1209:52854..53690+

>mRNA_P-littoralis_Contig1209.42.1 ID=mRNA_P-littoralis_Contig1209.42.1|Name=mRNA_P-littoralis_Contig1209.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig1209:52854..53690+ (Pylaiella littoralis U1_48)
CGTCGAAGCGGAGCAACCGCACGGCCTCCAACGGCAGTGCATCTTCCTCT
TCCGGCCGGAACAAAAAGGCAGCGAAGGCTTCCTCTTCTAGCTCCAAGAA
GCCGGCACCACGGAAGCATACAGCTCGCGGCGATACAAGTGACGAGCAAC
ACCAGGGAACTTCAGGTGGACACACTCGCTCGAGGCGTACTCGCCACCGC
CGCGGGTCTGACAGCGACGGTGATTCGAGCGACAAGTCCAACACGATACG
GAGCTATCACTCCGGCAGCGACGACGGCGGCAGCGTCTCGAGCTCCCACA
CGAGCGCCAGCTCTACTAGACCCGACAGGTCCGGCAGCGGCTCGACGAAG
GGAT
back to top