mRNA_P-littoralis_Contig897.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig897.10.1
Unique NamemRNA_P-littoralis_Contig897.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig897.10.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.340e-6
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:  154 SMLLASKDHPHGCQLCVCDVGGYPSIGIPTDEKDDRGYTVWENNHGVFSHCAGARS 321
            S+L A    P  CQLC+  VGG PS+G+ + EK+ +G   W N H  ++ C GA++
Sbjct:   70 SILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRDEWLNIHACWTICCGAKT 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig897.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXZ5_9PHAE3.340e-641.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig897contigP-littoralis_Contig897:26841..27375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size322
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.68e-09
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791784.7870889-CDS-P-littoralis_Contig897:26840..268901680791784.7870889-CDS-P-littoralis_Contig897:26840..26890Pylaiella littoralis U1_48CDSP-littoralis_Contig897 26841..26890 -
1680791784.7983887-CDS-P-littoralis_Contig897:27104..273751680791784.7983887-CDS-P-littoralis_Contig897:27104..27375Pylaiella littoralis U1_48CDSP-littoralis_Contig897 27105..27375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig897.10.1prot_P-littoralis_Contig897.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig897 26841..27375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig897.10.1

>prot_P-littoralis_Contig897.10.1 ID=prot_P-littoralis_Contig897.10.1|Name=mRNA_P-littoralis_Contig897.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MRCPSIACAFCDRASFMTLTDVVIFASVPPPFNIFSTSLFFSCLAHFKFT
LSMLLASKDHPHGCQLCVCDVGGYPSIGIPTDEKDDRGYTVWENNHGVFS
HCAGARS
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mRNA from alignment at P-littoralis_Contig897:26841..27375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig897.10.1 ID=mRNA_P-littoralis_Contig897.10.1|Name=mRNA_P-littoralis_Contig897.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=535bp|location=Sequence derived from alignment at P-littoralis_Contig897:26841..27375- (Pylaiella littoralis U1_48)
ATGAGGTGTCCGTCGATTGCATGTGCTTTCTGTGACCGTGCCTCTTTCAT
GACCCTCACGGATGTTGTGATTTTTGCATCTGTTCCTCCCCCTTTCAACA
TTTTCAGCACTTCGCTTTTTTTTTCATGTCTCGCACATTTCAAGTTCACG
CTGTCCATGCTGCTCGCCAGCAAGGATCACCCGCACGGCTGCCAGCTGTG
CGTGTGTGACGTCGGGGGCTACCCTTCCATTGGTATCCCCACAGACGAGA
AGGACGACCGTGGCTACACCGGTGAGAGGTTGTTTCGTCCCGTTTTTCCA
TCGAGGTCACGCTGTACTGCCACCAGCACCTTTCCCATGAATCTGTTGCT
TTTTTTTTTCATGCCTCGCACAATTTTTCAAGGTCACGCTGTACCGCCAC
CAGCACCTTTCCCATGAATCTGTTGCTTTTTTTTTCATGCTGCTTTTCTC
GTGTTTGTCCCGTTCGGTACACATATTTTTGGCAGTGTGGGAGAACAACC
ACGGCGTCTTCTCGCACTGCGCAGGAGCCAGGAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig897:26841..27375-

>mRNA_P-littoralis_Contig897.10.1 ID=mRNA_P-littoralis_Contig897.10.1|Name=mRNA_P-littoralis_Contig897.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig897:26841..27375- (Pylaiella littoralis U1_48)
ATGAGGTGTCCGTCGATTGCATGTGCTTTCTGTGACCGTGCCTCTTTCAT
GACCCTCACGGATGTTGTGATTTTTGCATCTGTTCCTCCCCCTTTCAACA
TTTTCAGCACTTCGCTTTTTTTTTCATGTCTCGCACATTTCAAGTTCACG
CTGTCCATGCTGCTCGCCAGCAAGGATCACCCGCACGGCTGCCAGCTGTG
CGTGTGTGACGTCGGGGGCTACCCTTCCATTGGTATCCCCACAGACGAGA
AGGACGACCGTGGCTACACCGTGTGGGAGAACAACCACGGCGTCTTCTCG
CACTGCGCAGGAGCCAGGAGC
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