mRNA_P-littoralis_Contig897.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig897.2.1
Unique NamemRNA_P-littoralis_Contig897.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig897.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig897contigP-littoralis_Contig897:5519..5712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size184
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791784.6937249-UTR-P-littoralis_Contig897:5518..55951680791784.6937249-UTR-P-littoralis_Contig897:5518..5595Pylaiella littoralis U1_48UTRP-littoralis_Contig897 5519..5595 -
1680791784.73832-UTR-P-littoralis_Contig897:5710..57121680791784.73832-UTR-P-littoralis_Contig897:5710..5712Pylaiella littoralis U1_48UTRP-littoralis_Contig897 5711..5712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791784.7130678-CDS-P-littoralis_Contig897:5595..55991680791784.7130678-CDS-P-littoralis_Contig897:5595..5599Pylaiella littoralis U1_48CDSP-littoralis_Contig897 5596..5599 -
1680791784.7270823-CDS-P-littoralis_Contig897:5609..57101680791784.7270823-CDS-P-littoralis_Contig897:5609..5710Pylaiella littoralis U1_48CDSP-littoralis_Contig897 5610..5710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig897.2.1prot_P-littoralis_Contig897.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig897 5596..5710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig897.2.1

>prot_P-littoralis_Contig897.2.1 ID=prot_P-littoralis_Contig897.2.1|Name=mRNA_P-littoralis_Contig897.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=35bp
MSIWFCFNCASFQGWCHLVHKFGMMAFMGWATRT*
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mRNA from alignment at P-littoralis_Contig897:5519..5712-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig897.2.1 ID=mRNA_P-littoralis_Contig897.2.1|Name=mRNA_P-littoralis_Contig897.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=194bp|location=Sequence derived from alignment at P-littoralis_Contig897:5519..5712- (Pylaiella littoralis U1_48)
AGATGAGTATTTGGTTTTGTTTCAATTGTGCCTCGTTCCAGGGGTGGTGC
CATCTAGTGCACAAGTTTGGCATGATGGCGTTCATGGGTTGGGCGACGCG
GACGCGGCCTCAGTTGAAATAGTATGAGACCACGCGGAGTATTGAGTCGT
TGGAACATGGTCTCAGTCGTGCGTCGTACGACATGCGGCACTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig897:5519..5712-

>mRNA_P-littoralis_Contig897.2.1 ID=mRNA_P-littoralis_Contig897.2.1|Name=mRNA_P-littoralis_Contig897.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=105bp|location=Sequence derived from alignment at P-littoralis_Contig897:5519..5712- (Pylaiella littoralis U1_48)
ATGAGTATTTGGTTTTGTTTCAATTGTGCCTCGTTCCAGGGGTGGTGCCA
TCTAGTGCACAAGTTTGGCATGATGGCGTTCATGGGTTGGGCGACGCGGA
CTTGA
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