mRNA_P-littoralis_Contig1209.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1209.2.1
Unique NamemRNA_P-littoralis_Contig1209.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1209.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1209contigP-littoralis_Contig1209:5553..6344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size241
Hectar predicted targeting categoryother localisation
Exons3
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.7344825-CDS-P-littoralis_Contig1209:5552..56251680789517.7344825-CDS-P-littoralis_Contig1209:5552..5625Pylaiella littoralis U1_48CDSP-littoralis_Contig1209 5553..5625 +
1680789517.7474542-CDS-P-littoralis_Contig1209:5882..60001680789517.7474542-CDS-P-littoralis_Contig1209:5882..6000Pylaiella littoralis U1_48CDSP-littoralis_Contig1209 5883..6000 +
1680789517.7613397-CDS-P-littoralis_Contig1209:6295..63441680789517.7613397-CDS-P-littoralis_Contig1209:6295..6344Pylaiella littoralis U1_48CDSP-littoralis_Contig1209 6296..6344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1209.2.1prot_P-littoralis_Contig1209.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1209 5553..6344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1209.2.1

>prot_P-littoralis_Contig1209.2.1 ID=prot_P-littoralis_Contig1209.2.1|Name=mRNA_P-littoralis_Contig1209.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
DPDCGREPRRPHNVREIRVSFSTPDSERGRPRHLPGSPLRVFFLSGRHQQ
LPFCLPRLLLGVPKDVNIMEAAAGEMDDRN
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mRNA from alignment at P-littoralis_Contig1209:5553..6344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1209.2.1 ID=mRNA_P-littoralis_Contig1209.2.1|Name=mRNA_P-littoralis_Contig1209.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=792bp|location=Sequence derived from alignment at P-littoralis_Contig1209:5553..6344+ (Pylaiella littoralis U1_48)
GATCCTGATTGCGGGCGGGAACCCCGTAGGCCGCACAATGTTCGAGAAAT
ACGCGTCTCTTTCAGCACACCAGGTACGAATAAAAAAGTGTTGCAGGTGT
GGGCGACGTGATTTCTCTACGAAGGGAGAGCGCAACTGTCACGCACATGA
AAACTCATATCTCATGCGAAGTTCGTCCACTAGATTTGTCCTGCGTCAAC
ACTCGAAGTACAGTCTACGTGGGGTATTCTTTTGTCGGATCCGGTTTTGG
GTGTCTCGAACATCAGGCAAACGAGATGTTTCTCTTCTGTGGTAATCCAA
TGTGTTCGCTTCCTCGGCTTTCGCTCACAGACAGCGAACGTGGACGTCCA
CGGCACCTTCCGGGAAGTCCTTTGCGAGTATTTTTCTTGAGCGGCCGTCA
TCAACAGCTGCCATTTTGTCTTCCGCGGTTGCTTCTTGGGGTTCCCAAAG
ATATTCATCAACGACAAGTGGGCAGGTATGTATGGGGAGGAAGCCGTAAG
GATTGATATGATGCAACACACGTGCAAACACAGCGCCGGTGTCGTCCATT
TTGTTAAAGATGGAGCATGGCGGGAGCTCCTGATTTCAATTCGGGGCAAT
TTCCTTTCGGTAATCCGGCGCTTTTGTTGCTTTGGCATGTTGTCCCATAA
CTATGTTCAAAGGCGTCCCTGTGCATCCCTTTTTTTGCCCCTAACTAATG
TCGTACGTTCATGCTTCGTAATTGTTTTCTGTATTTTGGCCACAGATGTC
AACATCATGGAGGCCGCCGCCGGCGAGATGGATGATAGGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1209:5553..6344+

>mRNA_P-littoralis_Contig1209.2.1 ID=mRNA_P-littoralis_Contig1209.2.1|Name=mRNA_P-littoralis_Contig1209.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig1209:5553..6344+ (Pylaiella littoralis U1_48)
GATCCTGATTGCGGGCGGGAACCCCGTAGGCCGCACAATGTTCGAGAAAT
ACGCGTCTCTTTCAGCACACCAGACAGCGAACGTGGACGTCCACGGCACC
TTCCGGGAAGTCCTTTGCGAGTATTTTTCTTGAGCGGCCGTCATCAACAG
CTGCCATTTTGTCTTCCGCGGTTGCTTCTTGGGGTTCCCAAAGATGTCAA
CATCATGGAGGCCGCCGCCGGCGAGATGGATGATAGGAAC
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