mRNA_P-littoralis_Contig895.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig895.37.1
Unique NamemRNA_P-littoralis_Contig895.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig895.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig895contigP-littoralis_Contig895:101841..102443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size603
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791783.8132107-UTR-P-littoralis_Contig895:101840..1019631680791783.8132107-UTR-P-littoralis_Contig895:101840..101963Pylaiella littoralis U1_48UTRP-littoralis_Contig895 101841..101963 +
1680791783.8364701-UTR-P-littoralis_Contig895:102401..1024431680791783.8364701-UTR-P-littoralis_Contig895:102401..102443Pylaiella littoralis U1_48UTRP-littoralis_Contig895 102402..102443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791783.823885-CDS-P-littoralis_Contig895:101963..1024011680791783.823885-CDS-P-littoralis_Contig895:101963..102401Pylaiella littoralis U1_48CDSP-littoralis_Contig895 101964..102401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig895.37.1prot_P-littoralis_Contig895.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig895 101964..102401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig895.37.1

>prot_P-littoralis_Contig895.37.1 ID=prot_P-littoralis_Contig895.37.1|Name=mRNA_P-littoralis_Contig895.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
MLIFLAKQRRSRGDHTPACAAFDPSQTTACSVSVSMRPAVLWCIRLFGFM
SSSVDHQEGVENRLKICLYNRLFCVLQSRVLFSATVNVHETDTDAIIRIY
LLFEGASSYAVQSVSVSQVKPTVGRTESLRVILGNSRPCPGSGGS*
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mRNA from alignment at P-littoralis_Contig895:101841..102443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig895.37.1 ID=mRNA_P-littoralis_Contig895.37.1|Name=mRNA_P-littoralis_Contig895.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig895:101841..102443+ (Pylaiella littoralis U1_48)
GAGAATTCGTCCCGGACATTTTTGATGAAACTGCTGTGGTGTTCAACTTT
GAGTTATGATTCGTGTTCATCGCTATGATAGCCTGATATCGATTGACTGG
TATGCCTTTTGTTTTTGTGTAACATGCTCATATTTTTGGCGAAGCAGAGG
CGTTCCAGAGGCGACCATACTCCAGCATGTGCTGCTTTCGACCCCAGTCA
AACAACGGCTTGCTCCGTGTCGGTTTCTATGCGCCCGGCTGTTCTTTGGT
GCATCCGTCTTTTCGGTTTTATGTCTTCCTCGGTAGATCATCAGGAAGGC
GTTGAGAACAGGCTAAAGATATGCTTGTACAATCGCTTGTTTTGTGTACT
TCAATCACGAGTTTTGTTTTCAGCAACGGTCAATGTGCACGAAACGGACA
CGGATGCGATCATCCGCATATATTTGCTATTTGAGGGGGCTAGTTCCTAT
GCAGTACAATCAGTCTCTGTGTCCCAAGTCAAGCCTACAGTAGGCCGGAC
TGAGTCGCTGCGTGTCATACTAGGCAACAGCAGACCTTGCCCAGGCAGCG
GGGGGAGCTAATATGTAAACGCCTCCGTACGACACACAAGCTCCCTTAAT
GAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig895:101841..102443+

>mRNA_P-littoralis_Contig895.37.1 ID=mRNA_P-littoralis_Contig895.37.1|Name=mRNA_P-littoralis_Contig895.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig895:101841..102443+ (Pylaiella littoralis U1_48)
ATGCTCATATTTTTGGCGAAGCAGAGGCGTTCCAGAGGCGACCATACTCC
AGCATGTGCTGCTTTCGACCCCAGTCAAACAACGGCTTGCTCCGTGTCGG
TTTCTATGCGCCCGGCTGTTCTTTGGTGCATCCGTCTTTTCGGTTTTATG
TCTTCCTCGGTAGATCATCAGGAAGGCGTTGAGAACAGGCTAAAGATATG
CTTGTACAATCGCTTGTTTTGTGTACTTCAATCACGAGTTTTGTTTTCAG
CAACGGTCAATGTGCACGAAACGGACACGGATGCGATCATCCGCATATAT
TTGCTATTTGAGGGGGCTAGTTCCTATGCAGTACAATCAGTCTCTGTGTC
CCAAGTCAAGCCTACAGTAGGCCGGACTGAGTCGCTGCGTGTCATACTAG
GCAACAGCAGACCTTGCCCAGGCAGCGGGGGGAGCTAA
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