mRNA_P-littoralis_Contig894.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig894.37.1
Unique NamemRNA_P-littoralis_Contig894.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig894.37.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 7.920e-42
Identity = 65/73 (89.04%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 NKGYLKDPQVDGCCRMLLRREPKVTIWPGGVETVKCKCSDVPGRGQCTNCICRKKGSICSELCKCKRACCVED 219
            NKGYLKDP+VDGCC+MLLRREPKVTIWPGGVETVKC+CSDVPGRGQCT+C+C++KGSICSELCKCKRACCVE+
Sbjct:  752 NKGYLKDPEVDGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKGSICSELCKCKRACCVEE 824
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BLAST of mRNA_P-littoralis_Contig894.37.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 8.260e-42
Identity = 65/73 (89.04%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 NKGYLKDPQVDGCCRMLLRREPKVTIWPGGVETVKCKCSDVPGRGQCTNCICRKKGSICSELCKCKRACCVED 219
            NKGYLKDP+VDGCC+MLLRREPKVTIWPGGVETVKC+CSDVPGRGQCT+C+C++KGSICSELCKCKRACCVE+
Sbjct: 1246 NKGYLKDPEVDGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKGSICSELCKCKRACCVEE 1318
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BLAST of mRNA_P-littoralis_Contig894.37.1 vs. uniprot
Match: A0A6H5L1Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.000e-21
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    7 GYLKDPQVDGCCRMLLRREPKVTIWPGGVETVKCKCSDVPGR--GQCTNCICRKKGS-ICSELCKCKRAC 207
            GY+++ +V+G C ML+RR PKVTIWPGG ETV+CKCS    +  G+CT+C+C  KGS  CSELCKCK  C
Sbjct:   36 GYIENTEVEGGCMMLMRRFPKVTIWPGGFETVRCKCSSGKRKRGGRCTSCVCITKGSGQCSELCKCKLTC 105
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BLAST of mRNA_P-littoralis_Contig894.37.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.120e-17
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:   10 YLKDPQVDGCCRMLLRREPKVTIWPGGVETVKCKCSDVPGR--GQCTNCICRKKG-SICSELCKCKRAC 207
            Y++  +V+G C ML+RR PKVTIWPGG ETVKC CS    +  G CT+C+C  KG   CSELCKCK  C
Sbjct:  493 YIEKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSSAKRKRGGHCTSCVCITKGFGHCSELCKCKLKC 561
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BLAST of mRNA_P-littoralis_Contig894.37.1 vs. uniprot
Match: A0A6H5JV03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV03_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 5.000e-11
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 3 
Query:   66 EGNYLAGRSRDGEM*MFGCAGTGSMYELHLPKERVNLFRAMQM 194
            EG YLAGR RDG++ MFGCAG GSMY++ L  ERVNL RA+QM
Sbjct:  420 EGYYLAGRGRDGQVYMFGCAGKGSMYDMRLHPERVNLLRAVQM 462
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig894.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JBA3_9PHAE7.920e-4289.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE8.260e-4289.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Q2_9PHAE2.000e-2160.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ3_9PHAE3.120e-1757.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV03_9PHAE5.000e-1169.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig894contigP-littoralis_Contig894:97545..97763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size219
Hectar predicted targeting categoryother localisation
Exons1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791783.7501783-CDS-P-littoralis_Contig894:97544..977631680791783.7501783-CDS-P-littoralis_Contig894:97544..97763Pylaiella littoralis U1_48CDSP-littoralis_Contig894 97545..97763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig894.37.1prot_P-littoralis_Contig894.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig894 97545..97763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig894.37.1

>prot_P-littoralis_Contig894.37.1 ID=prot_P-littoralis_Contig894.37.1|Name=mRNA_P-littoralis_Contig894.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
NKGYLKDPQVDGCCRMLLRREPKVTIWPGGVETVKCKCSDVPGRGQCTNC
ICRKKGSICSELCKCKRACCVED
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mRNA from alignment at P-littoralis_Contig894:97545..97763-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig894.37.1 ID=mRNA_P-littoralis_Contig894.37.1|Name=mRNA_P-littoralis_Contig894.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig894:97545..97763- (Pylaiella littoralis U1_48)
AACAAGGGGTATTTGAAGGATCCACAAGTTGACGGGTGTTGTAGGATGCT
GTTGCGCAGAGAACCGAAGGTAACTATCTGGCCGGGCGGAGTCGAGACGG
TGAAATGTAAATGTTCGGATGTGCCGGGACGGGGTCAATGTACGAATTGC
ATCTGCCGAAAGAAAGGGTCAATTTGTTCAGAGCTATGCAAATGTAAACG
CGCTTGCTGCGTAGAAGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig894:97545..97763-

>mRNA_P-littoralis_Contig894.37.1 ID=mRNA_P-littoralis_Contig894.37.1|Name=mRNA_P-littoralis_Contig894.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig894:97545..97763- (Pylaiella littoralis U1_48)
AACAAGGGGTATTTGAAGGATCCACAAGTTGACGGGTGTTGTAGGATGCT
GTTGCGCAGAGAACCGAAGGTAACTATCTGGCCGGGCGGAGTCGAGACGG
TGAAATGTAAATGTTCGGATGTGCCGGGACGGGGTCAATGTACGAATTGC
ATCTGCCGAAAGAAAGGGTCAATTTGTTCAGAGCTATGCAAATGTAAACG
CGCTTGCTGCGTAGAAGAT
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