mRNA_P-littoralis_Contig894.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig894.20.1
Unique NamemRNA_P-littoralis_Contig894.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.220e-31
Identity = 60/102 (58.82%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   10 CSDGTPGVDGNGVVCCSSGCTQCGGPKCSTS-SLPHFDGSDCCGGTIKESGVYCDESHEAPCIIRNPPPDD----QKCSDGTPGVDGNGVVCCSSGCTQCGG 300
            CS+G  G+DGNGVVCC  GC QCGG  C+TS +    DGS CCGG+IK SG YCDE+++APCII + P       + CS+G  G+DGNGVVCC  GC QCGG
Sbjct:  270 CSNGLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTPSETCSNGVEGIDGNGVVCCPLGCGQCGG 371          
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.820e-29
Identity = 60/110 (54.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    4 EKCSDGTPGVDGNGVVCCSSGCTQCGGPKCSTSSLPHFDGSD-CCGGTIKESGVYCDESHEAPCIIRNPPPDD----------QKCSDGTPGVDGNGVVCCSSGCTQCGG 300
            + CSDGT G+DGNGVVCC  GC QC G  C T+   +  GS+ CCGG +K  G+YCD+++EAPCII + P  D          Q CSDGT G+DGNGVVCC  GC QC G
Sbjct:  336 QTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSESADETQTCSDGTEGIDGNGVVCCPIGCGQCAG 445          
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.230e-27
Identity = 56/100 (56.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    4 EKCSDGTPGVDGNGVVCCSSGCTQCGGPKCSTSSLPHFDGSD-CCGGTIKESGVYCDESHEAPCIIRNPPPDDQKCSDGTPGVDGNGVVCCSSGCTQCGG 300
            E CS+G  G++GNGVVCC   C QCGG  C+ S      GS+ CCGG IK SG YCD+++EAPCII + P   + CS+G  G+DGNGVVCC   C QCGG
Sbjct:  470 ETCSNGLEGIEGNGVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSRPTTVETCSNGLEGIDGNGVVCCPLECNQCGG 569          
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.210e-27
Identity = 55/103 (53.40%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   13 SDGTPGVDGNGVVCCSSGCTQCGGPKCSTSSLPH-FDGSDCCGGTIKESGVYCDESHEAPCIIRNPPPDDQK------CSDGTPGVDGNGVVCCSSGCTQCGG 300
            SDG  G+DGNGVVCC  GC QC G  CST+   +      CCGG IK+SG YCD++  APCI  + P D         CSDG  G+DGNG VCC  GC QCGG
Sbjct:    4 SDGIEGIDGNGVVCCPLGCGQCVGTGCSTAGAANGLSSGSCCGGEIKDSGNYCDDTGVAPCIYGSAPEDXXXXXXXXTCSDGIEGIDGNGAVCCPLGCGQCGG 106          
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.310e-25
Identity = 56/109 (51.38%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   10 CSDGTPGVDGNGVVCCSSGCTQCGGPKCSTSSLPH-FDGSDCCGGTIKESGVYCDESHEAPCIIRNPPPDDQK-----------CSDGTPGVDGNGVVCCSSGCTQCGG 300
            CSDG  G+DGNGVVCC  GC QC G  CST+   +    S CCGG IK SG YCD++  APCI  + P  D             C+DG  G+DGNGVVCC  GC QC G
Sbjct:  535 CSDGIEGIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDADXXXXXXXXXXVGTCNDGIEGIDGNGVVCCPLGCGQCAG 643          
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 9.900e-25
Identity = 56/109 (51.38%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   10 CSDGTPGVDGNGVVCCSSGCTQCGGPKCSTSSLPH-FDGSDCCGGTIKESGVYCDESHEAPCIIRNPPPDDQK-----------CSDGTPGVDGNGVVCCSSGCTQCGG 300
            CSDG  G+DGNGVVCC  GC QC G  CS +   +    S CCGG IK SG YCD++  APCI  + P  D             CSDG  G+DGNGVVCC  GC QC G
Sbjct:  470 CSDGIEGIDGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDTDXXXXXXXXXXIGTCSDGIEGIDGNGVVCCPLGCGQCAG 578          
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.690e-24
Identity = 59/115 (51.30%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   10 CSDGTPGVDGNGVVCCSSGCTQCGGPKCSTSSLPH-FDGSDCCGGTIKESGVYCDESHEAPCIIRNPPP--DDQK---------------CSDGTPGVDGNGVVCCSSGCTQCGG 300
            CSDGT G+DGNGVVCC  GC QC G  CST+   +    S CCGG IK SG YCD++  APCI  + P   DD                 CSDG  G+DGNGVVCC  GC QC G
Sbjct:  270 CSDGTEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDAGDDXXXXXXXXXXXXXXVGTCSDGIEGLDGNGVVCCPLGCGQCAG 384          
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.620e-16
Identity = 41/70 (58.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 EKCSDGTPGVDGNGVVCCSSGCTQCGGPKCSTS-SLPHFDGSDCCGGTIKESGVYCDESHEAPCIIRNPP 210
            E CS+G  G+DGNGVVCC   C QCGG  C TS S     G  CCGG IK S  YCDE++EAPCII + P
Sbjct:  446 ETCSNGLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYCDETNEAPCIIGSRP 515          
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.930e-9
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   10 CSDGTPGVDG-NGVVCCSSGCTQCGGPKCSTSSLPHFDGSDCCGGTIKESGVYCDESHEAPCII 198
            CS+G PG++  +G  CC + C  C G  C      + DG  CCG  I+E+GV CD+S EAPCII
Sbjct: 3079 CSNGVPGIESASGDYCCPATCRACDGDNC------YLDGLFCCGDDIEETGVLCDDSEEAPCII 3136          
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Match: A0A835YVQ8_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVQ8_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.530e-5
Identity = 39/94 (41.49%), Postives = 47/94 (50.00%), Query Frame = 1
Query:   40 NGVVCCSSGCTQ-CGGPKCSTSSLPHFDGSDCCGGTIKESGVYCDESHEAPCIIR----NPPPD---DQKCSDGTPGVDGNGVVCCSSGCTQCG 297
            N V C +  C   CGG  C    LP    ++CCGGTIK SGV C +S  APC+I       PP+   D  C DG   +     +CC  GCT CG
Sbjct:  709 NSVCCPTKLCNGVCGGTGCQN--LPGGS-ANCCGGTIKLSGVVCTKS-TAPCVIAPVVPTQPPNPAGDPYCVDGD--LAATNDICCDPGCTLCG 796          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig894.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JC43_9PHAE3.220e-3158.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G651_ECTSI1.820e-2954.55Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
D7FQV4_ECTSI1.230e-2756.00Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5K5M2_9PHAE6.210e-2753.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8H5_9PHAE5.310e-2551.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT7_9PHAE9.900e-2551.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIS5_ECTSI1.690e-2451.30FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FIC5_ECTSI1.620e-1658.57Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FJ68_ECTSI4.930e-946.88WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YVQ8_9STRA7.530e-541.49GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig894contigP-littoralis_Contig894:64832..66025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQV4
PFAMsGlyco_hydro_88
Model size300
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.02e-28
EggNOG OGs2CYCX@1|root,2S3MN@2759|Eukaryota
DescriptionGlycosyl Hydrolase Family 88
Cds size300
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791783.620583-CDS-P-littoralis_Contig894:64831..649141680791783.620583-CDS-P-littoralis_Contig894:64831..64914Pylaiella littoralis U1_48CDSP-littoralis_Contig894 64832..64914 -
1680791783.6351864-CDS-P-littoralis_Contig894:65808..660251680791783.6351864-CDS-P-littoralis_Contig894:65808..66025Pylaiella littoralis U1_48CDSP-littoralis_Contig894 65809..66025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig894.20.1prot_P-littoralis_Contig894.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig894 64832..66025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig894.20.1

>prot_P-littoralis_Contig894.20.1 ID=prot_P-littoralis_Contig894.20.1|Name=mRNA_P-littoralis_Contig894.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
DEKCSDGTPGVDGNGVVCCSSGCTQCGGPKCSTSSLPHFDGSDCCGGTIK
ESGVYCDESHEAPCIIRNPPPDDQKCSDGTPGVDGNGVVCCSSGCTQCGG
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mRNA from alignment at P-littoralis_Contig894:64832..66025-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig894.20.1 ID=mRNA_P-littoralis_Contig894.20.1|Name=mRNA_P-littoralis_Contig894.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1194bp|location=Sequence derived from alignment at P-littoralis_Contig894:64832..66025- (Pylaiella littoralis U1_48)
GACGAGAAGTGCAGTGATGGCACTCCGGGAGTCGACGGTAACGGCGTCGT CTGCTGCTCCAGCGGCTGCACCCAGTGCGGTGGGCCAAAGTGCAGCACGT CTTCGCTCCCTCATTTTGATGGCAGCGACTGCTGTGGCGGCACCATCAAA GAGAGCGGCGTGTACTGCGATGAGTCCCACGAAGCCCCCTGCATCATCCG TAACCCTCCCCCCGACGGTGAGCAATTGAAAGTGTTGATGCGTACATATT TCTACACGACGCTAGCCAACACATACCAACCTACGCGTGTATAATGATGC CACAGTTTTATGCCGTCGAAACGGGTGACACAAAAACGATGCCAACAGCA GACCGCCCCCCTTCCGTGCTGTTGAAAATTTGCCACGTCGCTGTACTACT ACTGTATTGTATTTCAACCAGCGATCGGCGATCGGCGACAGAACGCCTGC TGCTGTTCCTGCAAAATCTTGAAGTCGCCCCCTGCCCTCCGCTCCAGTTT ACGGATGGCCAACAGGGATCAGCCACACATGAAAAATGATCGTTTCAAGA TTCGCGCTCATTTTGTAAACTGATGATACCTGATATGGTTTGTAATAGCA ACTTGTTTTTCCTCCTACCTCCTCCTGCATGGGGTTCGGAAACACCTTCT TCCTCGAGTTCATAGCGCTACGGAGAAGGGGATCTAGGCGCCGTTTTACT TAAAAAAATAACCCTGTGAATTTCGTTTACGAGATAGCGGGCGAAGGTCA AGCCCGTTTAGCCTCCAGGGGATCAAACCCGAAAACACTTTAAGTCGACT CAGAGCGCTGGCGAAGGGGGGGCACTCTCGGAGATGCTCATGAAAAAAAG GAAGAACCTTCAAGCATTTCGTTCCATGCTACTGTAAAGGGGGCAAGTGT CGCGCGACGGTTTTCGTTCTTTCGGAGGAAACCTCCGTCTCCCTGACGTG GTACTCGTAATGCAGTCTACTCTGCTGTAGTCCTTGATCAGACACTAACA TCATGACGAAGACGCCTCACGCCCGCTAGGTAATTGTGAACGTCTTGGGC CCACCCGCGCAATATGTGTGAAGCGTTTGACATAGTACCTGTATCCTCTA CGACCGTACAGATCAGAAATGCAGTGATGGCACTCCGGGAGTCGACGGTA ACGGCGTCGTCTGCTGCTCCAGCGGCTGCACCCAGTGCGGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig894:64832..66025-

>mRNA_P-littoralis_Contig894.20.1 ID=mRNA_P-littoralis_Contig894.20.1|Name=mRNA_P-littoralis_Contig894.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig894:64832..66025- (Pylaiella littoralis U1_48)
GACGAGAAGTGCAGTGATGGCACTCCGGGAGTCGACGGTAACGGCGTCGT
CTGCTGCTCCAGCGGCTGCACCCAGTGCGGTGGGCCAAAGTGCAGCACGT
CTTCGCTCCCTCATTTTGATGGCAGCGACTGCTGTGGCGGCACCATCAAA
GAGAGCGGCGTGTACTGCGATGAGTCCCACGAAGCCCCCTGCATCATCCG
TAACCCTCCCCCCGACGATCAGAAATGCAGTGATGGCACTCCGGGAGTCG
ACGGTAACGGCGTCGTCTGCTGCTCCAGCGGCTGCACCCAGTGCGGTGGG
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