mRNA_P-littoralis_Contig894.13.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig894.13.1 vs. uniprot
Match: A0A6H5K213_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K213_9PHAE) HSP 1 Score: 176 bits (446), Expect = 3.090e-54 Identity = 85/132 (64.39%), Postives = 97/132 (73.48%), Query Frame = 2
Query: 38 GDSCASPKLNEIDGVAANRWGWYMEAAFTSTEQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSSSYEMDPADGYCFDDFHLHVGNEFPTNV--------AAPGQYTQAEYLDIGTFYIIVHVGETCTSC 409
G SC SP LN I+GV ANRWGWY+E+ F ST+Q FTFDMYAGAGQN L++G AGNV+V V DGSS Y + PADGYCFDD H+HVGNE PT APGQY+Q+ L +G FYIIVHVGETCT C
Sbjct: 6 GGSCLSPPLNGIEGVTANRWGWYLESTFDSTDQSFTFDMYAGAGQNDLSSGALAGNVVVNVIQDGSSDYTVHPADGYCFDDVHVHVGNELPTKTKKSVTTPTVAPGQYSQST-LGVGDFYIIVHVGETCTPC 136
BLAST of mRNA_P-littoralis_Contig894.13.1 vs. uniprot
Match: A0A285X5T6_9FLAO (Uncharacterized protein n=1 Tax=Salinimicrobium sediminis TaxID=1343891 RepID=A0A285X5T6_9FLAO) HSP 1 Score: 64.3 bits (155), Expect = 3.360e-9 Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = 2
Query: 20 GCEEVY--GDSCASPKLNEIDGVAANRWGWYME--AAFTSTEQ--VFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSSSYEMDPADGYCFDDFHLHVGNEFPTNVAAPGQYTQAEYLDIGTF------YIIVHVGETC 400
GCE Y GD +LN +D N WGW +E AA + E V+ YAGAGQN ++ G AG+V++T+ G+ ++ DG +D H++VG+++P + APGQ+ + D+ + Y+IVH E C
Sbjct: 384 GCETAYMFGDV----ELNSLD-YPGNNWGWGLEITAADIAAEADGVWEIPFYAGAGQNDISKGWEAGHVVLTLE-GGNLEVDIVLNDGVTINDTHIYVGSDWPDS-RAPGQFDLDDDDDVYSVNGWDPVYVIVHA-EVC 514
BLAST of mRNA_P-littoralis_Contig894.13.1 vs. uniprot
Match: A0A1M7D0L9_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium saccharophilum TaxID=29534 RepID=A0A1M7D0L9_9FLAO) HSP 1 Score: 58.9 bits (141), Expect = 2.120e-7 Identity = 50/152 (32.89%), Postives = 77/152 (50.66%), Query Frame = 2
Query: 5 CDTSFGCEEVYGDSCASPKLNEIDGVA-ANRWGWYMEAAFTST--EQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSS-SYEMDPAD-GYCFDDFHLHVGNEFPTNVAAPGQYTQAE-------------YLDIGTFYIIVHVGETCTS 406
CDT++ ++G+ N +G+ + +WGW F S +T+++YAGAGQN ++ G AG V TVNV GS+ S ++ G F + H+++ + PT AAPGQY Y G+F++IVH G CT+
Sbjct: 197 CDTAY----MFGN-------NTFNGLGLSEKWGW---VTFYSNVVNGSYTYNLYAGAGQNDISKGYLAGTV--TVNVQGSNISITINATHPGTVFTETHVYLSDAIPTT-AAPGQYGNQHSLNNTTSDTYNLTYSGDGSFWLIVHAG-VCTT 330
BLAST of mRNA_P-littoralis_Contig894.13.1 vs. uniprot
Match: A0A238W7I4_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium sp. ov086 TaxID=1761785 RepID=A0A238W7I4_9FLAO) HSP 1 Score: 58.9 bits (141), Expect = 2.120e-7 Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 2
Query: 5 CDTSFGCEEVYGDSCASPKLNEIDGVAANRWGWYMEAAFTSTEQ--VFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSS-SYEMDPAD-GYCFDDFHLHVGNEFPTNVAAPGQYTQAE-------------YLDIGTFYIIVHVGETCTS 406
CDT++ +YG+ N + G++ +WGW A F Q +T+++YAGAGQN ++ G AG IV V + G++ S E++ + G F + H+++ + PT AAPGQ+ Y GTF++IVH G CT+
Sbjct: 197 CDTAY----MYGNYT----FNSL-GIS-EKWGW---ATFYDNTQNGTYTYNLYAGAGQNDISKGYLAG--IVNVTIQGTNVSVEINATNPGTVFTETHVYLSDSPPTT-AAPGQFGNQHTLNNTTLDNYSLTYSGDGTFWLIVHAG-VCTT 330
BLAST of mRNA_P-littoralis_Contig894.13.1 vs. uniprot
Match: J1KVN6_9FLAO (Uncharacterized protein n=5 Tax=Flavobacterium TaxID=237 RepID=J1KVN6_9FLAO) HSP 1 Score: 58.2 bits (139), Expect = 3.960e-7 Identity = 43/147 (29.25%), Postives = 68/147 (46.26%), Query Frame = 2
Query: 5 CDTSFGCEEVYGDSCASPKLNEIDGVAANRWGWYMEAAFTSTEQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSSSYEMDPADGYCFDDFHLHVGNEFPTNVAAPGQYTQAE-------------YLDIGTFYIIVHVGETCTS 406
CDT++ ++G++ N + + +WGW + T +T+++YAGAGQN + NG AG V V + G F + H+++ + PT AAPGQY Y G+F++IVH G CT+
Sbjct: 197 CDTAY----MFGNNT----FNSLQ--LSEKWGWVTSYS-NVTNGTYTYNLYAGAGQNNINNGYLAGTVTVVIQGSNVQVTLNATHSGTVFTESHVYLSDSPPTT-AAPGQYGNQHTLNNTTTDTYNLTYSGDGSFWLIVHAG-VCTT 330
BLAST of mRNA_P-littoralis_Contig894.13.1 vs. uniprot
Match: A0A0D0LDB1_9FLAO (Uncharacterized protein n=2 Tax=Flavobacterium TaxID=237 RepID=A0A0D0LDB1_9FLAO) HSP 1 Score: 57.0 bits (136), Expect = 1.000e-6 Identity = 45/149 (30.20%), Postives = 75/149 (50.34%), Query Frame = 2
Query: 5 CDTSFGCEEVYGDSCASPKLNEIDGVAANRWGWYMEAAFTSTEQ-VFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSSSYEMDPAD-GYCFDDFHLHVGNEFPTNVAAPGQYTQAE-------------YLDIGTFYIIVHVGETCTS 406
CDT++ +YG+ N + + +WGW + +T+ ++T+++YAGAGQN + G AG V VT+ + E++ + G F + H+++ + PT AAPGQ+ Y GTF++IVH G CT+
Sbjct: 196 CDTAY----MYGNYT----FNALQ--ISEKWGW--ANYYDNTQNGIYTYNLYAGAGQNDITKGYLAGTVTVTIQ-GANIGIEINATNPGTVFTETHVYLSDSPPTT-AAPGQFGNQHTLNNTMLDNYNLTYSGDGTFWLIVHAG-VCTT 329
BLAST of mRNA_P-littoralis_Contig894.13.1 vs. uniprot
Match: A0A6V6Z5T5_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium chungangense TaxID=554283 RepID=A0A6V6Z5T5_9FLAO) HSP 1 Score: 54.3 bits (129), Expect = 8.830e-6 Identity = 43/149 (28.86%), Postives = 67/149 (44.97%), Query Frame = 2
Query: 5 CDTSFGCEEVYGDSCASPKLNEIDGVAANRWGW--YMEAAFTSTEQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSSSYEMDPADGYCFDDFHLHVGNEFPTNVAAPGQYTQAE-------------YLDIGTFYIIVHVGETCTS 406
CDT++ ++G+ N ++ + +WGW Y T +T+++YAGAGQN + G AG V + + S G F + H+++ + PT AAPGQ+ Y G F+IIVH G CT+
Sbjct: 197 CDTAY----MFGNYT----FNSLE--ISEKWGWATYYNNVMNGT---YTYNLYAGAGQNDITKGYLAGTVTIVIQGSNVSVTINATHPGTVFTETHVYLSDSPPTT-AAPGQFGNQHTLSNTTTDNYNLSYSGDGNFWIIVHAG-VCTT 330
BLAST of mRNA_P-littoralis_Contig894.13.1 vs. uniprot
Match: UPI001BBB83C1 (Uncharacterized protein n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=UPI001BBB83C1) HSP 1 Score: 53.5 bits (127), Expect = 1.370e-5 Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 2
Query: 35 YGDSCASPKLNEIDGVAANR-WGWYMEAAFTSTEQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDG--SSSYEMDPADGYCFDDFHLHVGNEFPTNVA---------APGQY 337
YGD A P + ++ NR WGW +E + +D+YAGAG N+L+NG G V V DG + +YE+D +GY + HL VGN+ V APGQ+
Sbjct: 115 YGDDYAKPNWDYVN----NRFWGWTNGPL---SEGSYEWDLYAGAGANILSNGTVIGKVYVDYE-DGCVTVTYEVD--EGYAIGEAHLWVGNDVLPKVKRGRTSVYTNAPGQF 217
BLAST of mRNA_P-littoralis_Contig894.13.1 vs. uniprot
Match: A0A1H5IQ07_9FLAO (Uncharacterized protein n=1 Tax=Salinimicrobium catena TaxID=390640 RepID=A0A1H5IQ07_9FLAO) HSP 1 Score: 52.0 bits (123), Expect = 6.410e-5 Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query: 5 CDTSFGCEEVYGDSCASPKLNEID--GVAAN-RWGWYM---EAAFTST----EQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSS-SYEMDPADGYCFDDFHLHVGNEFPTNVAAPGQYTQAEYLDIGTF------YIIVHVGETC 400
CDT++ +YGD NE+D G+ N WGW + E AF + V+ YAGAGQN ++ G AG +++T+ DG+ +++ +G ++ H++VG ++P + APGQ+ L TF +IIVH E C
Sbjct: 392 CDTAY----MYGD-------NELDDLGLYDNANWGWGLVLDEDAFDDEYYEGDGVWRLPFYAGAGQNDVSKGWEAGYIVLTL--DGNELEVDIELNEGVSLNESHIYVGADWPES-DAPGQFD----LGTDTFTVGDAPHIIVHA-EVC 521 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig894.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig894.13.1 >prot_P-littoralis_Contig894.13.1 ID=prot_P-littoralis_Contig894.13.1|Name=mRNA_P-littoralis_Contig894.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp DLRHVVRLRGGVRRLVRLSEAQRDRRRGGQPLGLVHGSGLHVHRAGVYLRback to top mRNA from alignment at P-littoralis_Contig894:54266..54712- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig894.13.1 ID=mRNA_P-littoralis_Contig894.13.1|Name=mRNA_P-littoralis_Contig894.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig894:54266..54712- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig894:54266..54712- >mRNA_P-littoralis_Contig894.13.1 ID=mRNA_P-littoralis_Contig894.13.1|Name=mRNA_P-littoralis_Contig894.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig894:54266..54712- (Pylaiella littoralis U1_48)back to top |