mRNA_P-littoralis_Contig894.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig894.8.1
Unique NamemRNA_P-littoralis_Contig894.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig894.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig894contigP-littoralis_Contig894:49101..49730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size630
Hectar predicted targeting categorysignal anchor
Exons1
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791783.2420654-UTR-P-littoralis_Contig894:49100..491161680791783.2420654-UTR-P-littoralis_Contig894:49100..49116Pylaiella littoralis U1_48UTRP-littoralis_Contig894 49101..49116 -
1680791783.2725692-UTR-P-littoralis_Contig894:49509..497301680791783.2725692-UTR-P-littoralis_Contig894:49509..49730Pylaiella littoralis U1_48UTRP-littoralis_Contig894 49510..49730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791783.2620947-CDS-P-littoralis_Contig894:49116..495091680791783.2620947-CDS-P-littoralis_Contig894:49116..49509Pylaiella littoralis U1_48CDSP-littoralis_Contig894 49117..49509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig894.8.1prot_P-littoralis_Contig894.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig894 49117..49509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig894.8.1

>prot_P-littoralis_Contig894.8.1 ID=prot_P-littoralis_Contig894.8.1|Name=mRNA_P-littoralis_Contig894.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MEAVEVPRWEMALLAKRGCGFRTELEVFKIWFWVSLRHGFCFPQSGFDFL
FPVSFFRFCILFVYFPVFCSGTICNAGVKSHGGGCDAMIPGRQRQLGFSR
HILRFSCVLVDVVFSPPTRRNRGETFLLSP*
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mRNA from alignment at P-littoralis_Contig894:49101..49730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig894.8.1 ID=mRNA_P-littoralis_Contig894.8.1|Name=mRNA_P-littoralis_Contig894.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig894:49101..49730- (Pylaiella littoralis U1_48)
AAAAAATGTGAATAGTTAGCCCAAGATTCGAAAATCATGTTCTCGTATTG
ATACGGATTTTTTTTTTGTCGTCATTGTGTCTCTTTTTATGCTTGTTTTA
TTTTTGCCTTCCAAGGCATTTTCGGTAACAAGTGTAAAGGAGGCTTGGTG
TCGTATTTATTTTTTGTAAAAGATGGGCTTTCTGTTGCCACTAAACAAAA
AACTATTTTGGAGTCGTAAAAATGGAAGCGGTCGAAGTGCCGCGGTGGGA
GATGGCTTTGCTTGCCAAACGGGGCTGTGGGTTTCGTACAGAGCTTGAGG
TGTTCAAAATATGGTTCTGGGTTTCGCTTCGTCATGGTTTTTGCTTTCCA
CAGTCTGGTTTCGATTTTTTGTTTCCGGTTTCGTTCTTCAGATTTTGCAT
TTTGTTTGTCTATTTCCCAGTTTTTTGTTCTGGCACTATATGCAACGCTG
GCGTCAAAAGTCATGGGGGGGGGTGTGATGCCATGATTCCAGGGCGGCAG
CGTCAGTTGGGTTTCAGCCGTCATATCCTAAGATTTTCATGTGTCTTGGT
TGATGTTGTGTTCTCGCCTCCGACTCGCAGAAACAGGGGGGAAACTTTCC
TGTTGTCTCCATGATTTACATACATAATTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig894:49101..49730-

>mRNA_P-littoralis_Contig894.8.1 ID=mRNA_P-littoralis_Contig894.8.1|Name=mRNA_P-littoralis_Contig894.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig894:49101..49730- (Pylaiella littoralis U1_48)
ATGGAAGCGGTCGAAGTGCCGCGGTGGGAGATGGCTTTGCTTGCCAAACG
GGGCTGTGGGTTTCGTACAGAGCTTGAGGTGTTCAAAATATGGTTCTGGG
TTTCGCTTCGTCATGGTTTTTGCTTTCCACAGTCTGGTTTCGATTTTTTG
TTTCCGGTTTCGTTCTTCAGATTTTGCATTTTGTTTGTCTATTTCCCAGT
TTTTTGTTCTGGCACTATATGCAACGCTGGCGTCAAAAGTCATGGGGGGG
GGTGTGATGCCATGATTCCAGGGCGGCAGCGTCAGTTGGGTTTCAGCCGT
CATATCCTAAGATTTTCATGTGTCTTGGTTGATGTTGTGTTCTCGCCTCC
GACTCGCAGAAACAGGGGGGAAACTTTCCTGTTGTCTCCATGA
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