mRNA_P-littoralis_Contig894.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig894.19.1
Unique NamemRNA_P-littoralis_Contig894.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.350e-11
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    1 GIESERGG--ICCPIGCSKCGGKQCVSDGPDLPRG--SCCGYRIRENGEYCDDTKEAPCIIGKPP 183
            G+E   G   +CCP+GC +CGG  C + G     G  SCCG  I+ + EYCD+T EAPCIIG  P
Sbjct:  350 GVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIGSRP 414
[Close]
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.280e-10
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 GIESERGGICCPIGCSKCGGKQCVSDGP--DLPRGSCCGYRIRENGEYCDDTKEAPCIIGKPP 183
            GI+   G +CCP+ C +CGGK C + G    L   SCCG  I+ + EYCD+T EAPCIIG  P
Sbjct:  454 GIDGN-GVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYCDETNEAPCIIGSRP 515
[Close]
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.330e-10
Identity = 33/63 (52.38%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 GIESERGGICCPIGCSKCGGKQCVSDGPDLPRGS--CCGYRIRENGEYCDDTKEAPCIIGKPP 183
            GIE   G +CCP+ C++CGG  C   G     GS  CCG  I+ +G YCDDT EAPCIIG  P
Sbjct:  478 GIEGN-GVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSRP 539
[Close]
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.860e-10
Identity = 33/63 (52.38%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 GIESERGGICCPIGCSKCGGKQCVSDGP--DLPRGSCCGYRIRENGEYCDDTKEAPCIIGKPP 183
            GI+   G +CCPIGC +CGG  C + G    L   SCCG  ++  G YCDDT EAPCIIG  P
Sbjct:  579 GIDGN-GVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIGSAP 640
[Close]
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.120e-10
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    1 GIESERGG--ICCPIGCSKCGGKQCVSDGPDLPRGS--CCGYRIRENGEYCDDTKEAPCIIGKPP 183
            GIE   G   +CCP+ C +C G  C + G D   GS  CCG  +++ G YCD T EAPCI G PP
Sbjct:   51 GIEGIDGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCIYGSPP 115
[Close]
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.240e-10
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 GIESERGGICCPIGCSKCGGKQCVSDGPDLPRGS--CCGYRIRENGEYCDDTKEAPCIIGKPP 183
            GI+   GG+CCP+ C +CGGK C + G     G   CC   I+ + EYCD+T EAPCIIG  P
Sbjct:  353 GIDGS-GGVCCPLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCIIGSRP 414
[Close]
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 8.370e-10
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 GIESERGGICCPIGCSKCGGKQCVSDGPDLPRG--SCCGYRIRENGEYCDDTKEAPCIIGKPP 183
            GI+   G +CCP+ C++CGG  C   G     G  SCCG  ++ +G YCDDT EAPCIIG  P
Sbjct:  533 GIDGN-GIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCIIGSSP 594
[Close]
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.190e-9
Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 GIESERGGICCPIGCSKCGGKQCVSDGP--DLPRGSCCGYRIRENGEYCDDTKEAPCIIGKPP 183
            GI+   G +CCPIGC +C G  C + G    L   SCCG  ++  G YCDDT EAPCIIG  P
Sbjct:  510 GIDGN-GVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRP 571
[Close]
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-8
Identity = 28/58 (48.28%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:    1 GIESERGGICCPIGCSKCGGKQCVSDG-PDLPRGSCCGYRIRENGEYCDDTKEAPCII 171
            GIES  G +CCP GC+ CGG  C + G PD    SCC   I   G  C +T EAPC++
Sbjct: 1381 GIESSDGAVCCPTGCTMCGGSGCSTVGMPDYGPESCCSSDILSTGASCSETGEAPCVL 1438
[Close]
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.990e-8
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 GIESERGGICCPIGCSKCGGKQCVSDG-PDLPRGSCCGYRIRENGEYCDDTKEAPCIIGKPP 183
            GIES  G +CCP+GC++CGG+ C + G P+    SCC   +   G  C  ++EAPC++ + P
Sbjct:  618 GIESSDGAVCCPLGCTQCGGEGCSTVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVLDETP 679
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig894.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JC43_9PHAE6.350e-1149.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIC5_ECTSI1.280e-1050.79Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FQV4_ECTSI1.330e-1052.38Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5JUS5_9PHAE1.860e-1052.38MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JGP9_9PHAE3.120e-1047.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZG5_9PHAE4.240e-1049.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUJ9_ECTSI8.370e-1049.21Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
D7G651_ECTSI2.190e-950.79Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
D7FJ68_ECTSI1.140e-848.28WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JJ37_9PHAE4.990e-841.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig894contigP-littoralis_Contig894:59223..61883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIC5
PFAMsLRRNT,LRR_8
Model size491
Max annot lvl2759|Eukaryota
KEGG koko:K13023
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.1e-11
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size489
COG categoryU
BRITEko00000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791783.1570432-CDS-P-littoralis_Contig894:59222..593151680791783.1570432-CDS-P-littoralis_Contig894:59222..59315Pylaiella littoralis U1_48CDSP-littoralis_Contig894 59223..59315 -
1680791783.1713498-CDS-P-littoralis_Contig894:59490..595551680791783.1713498-CDS-P-littoralis_Contig894:59490..59555Pylaiella littoralis U1_48CDSP-littoralis_Contig894 59491..59555 -
1680791783.181568-CDS-P-littoralis_Contig894:60109..601691680791783.181568-CDS-P-littoralis_Contig894:60109..60169Pylaiella littoralis U1_48CDSP-littoralis_Contig894 60110..60169 -
1680791783.1922798-CDS-P-littoralis_Contig894:60970..610541680791783.1922798-CDS-P-littoralis_Contig894:60970..61054Pylaiella littoralis U1_48CDSP-littoralis_Contig894 60971..61054 -
1680791783.203359-CDS-P-littoralis_Contig894:61696..618831680791783.203359-CDS-P-littoralis_Contig894:61696..61883Pylaiella littoralis U1_48CDSP-littoralis_Contig894 61697..61883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig894.19.1prot_P-littoralis_Contig894.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig894 59223..61883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig894.19.1

>prot_P-littoralis_Contig894.19.1 ID=prot_P-littoralis_Contig894.19.1|Name=mRNA_P-littoralis_Contig894.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
GIESERGGICCPIGCSKCGGKQCVSDGPDLPRGSCCGYRIRENGEYCDDT
KEAPCIIGKPPVEPPVGAPVAAPVAAPYAAPVAAPYAAPVAAPAACHVPG
ATYGDNKCDQELNNAECDYDGGDCCFCTCDGDVHGNKCDKLKWYYCKDPD
YKVEREDKDQWDV
back to top

mRNA from alignment at P-littoralis_Contig894:59223..61883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig894.19.1 ID=mRNA_P-littoralis_Contig894.19.1|Name=mRNA_P-littoralis_Contig894.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2661bp|location=Sequence derived from alignment at P-littoralis_Contig894:59223..61883- (Pylaiella littoralis U1_48)
GGAATCGAAAGCGAAAGAGGCGGCATCTGTTGCCCGATCGGCTGCTCTAA
GTGCGGTGGGAAGCAGTGCGTCTCGGATGGTCCCGATCTTCCACGCGGCT
CCTGCTGCGGGTACCGCATCAGGGAGAACGGAGAGTACTGCGACGACACG
AAGGAAGCCCCCTGCATCATCGGCAAGCCCCCCGTTGGTGAGGCGTAGAC
ACGTCTGCTGGTGTATCATAAATGCCACTCGACGCGACCCACGGTCTCAG
TATTATGAAAGGTTTGGAGCAAGCCGTAGTAAACTCGGCGAGGACCCGTT
CGTGCCCAGCACATTCGACAAGCCATTTCGATTAAAACAACTTGCCGTGT
CATCTCATCCAGCTGCTTGTCCTGGGTGACACTCTGTTCCCGTGCTTCAG
AAAGCGGCGAAGCAACAGAGTGAGTCATGATTCACTGACGTTTGGAACTG
TGAGAAAAATTCGATATCGTCATCGTGATGATAACACATCACAGGCCGCT
TCCCAGAACGTATTGCAACGTCCGGCTCCGCACATGCATTTCCTGGTCCT
ACCCAAGCTCTTTCACGCCATCTCCCGCCCAAACCCCGGCTCCGGCCCAT
ACCCTGCATACATCCCGGTCGCGGTTCCCGGTTTCGTATCACCTTTACGC
GTGTAGACGTCGGCCCAAAACTTACACCAATCGGATCTACAGGAACTGTG
TCAATATTGTTGCGTTCCACGATTTTTAAACCTATTTTGGGCCACATGAT
CCCGGCAATGCTGAGCTCACAAAATGCTTCGCTTTTTTCCCACCCATGCT
TCTCTCTGCGGCTACTGCGCCTTCTCCAGAACCTCCGGTCGGTGCCCCGG
TAGCTGCTCCGGTCGCTGCCCCGTACGCTGCCCCGGTCGCTGCCCCGTAC
GCCGCCCCGGTCGGTAAGTCTCGATTCGCCTTCACCTGCGAACGTCGACT
TCAAAGAAAACGACCAACGCGAAGGCTAGATCCAATTAAATTCCAAATGG
AAGGCTAACTCGAATCCCGAAACAGTATACTTCGTATACAAGCAATTTCA
GTCAGTAGCCATACGTCCAGACACTGCGACAATACTTGCCGTTGCAAGGT
GTGAAAACAAACCCAGGCAGTATAGAGTACATGCTACCCGCACTGAGCTC
ACCAAACCTGACGCTCTGTTTCGCCGATGTTCCTGTGTGCGGCGATTACG
TCTGCCCTGAAACCTCCGGTAGCTGCCCCTTGTGTTGAGAGTCTACTGTA
AGTCCCATTGTTCACGCGTTACTGTTTACTCGAAACGAACCTGAAACAGC
AGTAATACGCAACGGACAATAAGTTCGAGAAAACATGCGGTATCAAGGTT
GACAACCCCATTCCCTCTCTAGAGCACATGACTCCCTGTCCCCGGTTCCT
GCGCCTGCCGTTGGCCCTCGGTTTGCCGCCCCGGTGGCTGTCCCGATCGC
TGCCCTTTGAGGCTGCTGCGGGTAGAGCTTGACGCGCGGACGTCATCTCG
GACATTTCCCAGCAATGAAAACGAAACGATGATAGTATCATTATGTCCAG
TTCCTAGCGGCTTGCCGAGTTCCTGGCGTTGATACTTTTGGGCATGGCAT
TCTAGGGTTTGTCTGGCGCGCATCTATTGCTAACCGCACCGAGCTCACTA
AACCTGGCGCGCTGTCCGGCTACCACGCTTGTTCTTTCCTGAACGCTCTC
GACCATTGATGCAGCTGCTCCGGCAGCTTGCCATGTACCGGGCGCGACCT
ACGGCGACAACAAATGCGATCAAGGTAAGGAAAACTATGCTGAGTCCGCC
ATGTTTTTCAGTGCCGGTGACGGGCATTGAGTAGAAAGCGCCCATTTCTT
TCTTCACGAACGGGCACGACTTGACACGGATGCCTCCAACCTGTGGTCGG
CACTTCACAGCACTGGCCTGTTGCTCTATTATCCCGCCGGTGTATGCATG
CACATGATTTACGGTGGTGGACAGAGCCGTAAGCTATTTGTTTGAATTCA
AGTTACAGCAGAGTGGCGACCTCACAACACAACACCCATACACGGGCAAA
CTGCACCTCGCACCAAATGTCCGTTACACATCAGGGTGAAATTCAAGCTT
AACTCCAAAAGTTGAATAATGCCTATCACTTGGAACTGTCTGTGTGAAAT
TCAGGTACTGTCATAAAGTGGCCGCTCATCTGCATATGGTGCAAGTCTGG
CCCTGGCCGCAGCCCTCGAAATCGTGAAAGTTGACCTGTTGTTGAGAATC
GTACGTACTGCTGCCGACATCTCGACCTTGACCATACACACGCTGACGGA
TTCATCCGGACCGTTTCCTGCCTGACAGAACTGAACAACGCTGAATGTGA
CTATGACGGTGGCGACTGCTGCTTCTGCACGTGCGACGGAGATGTGAGTG
TACACGCGCGATGTAATCCAGCAAGTATTGTAATGCTTGATAGCCGATGT
AAAAGCACCACGTCGAGCCTGTACGAAAGACACTGTAGTGCAGCAGTACC
CTTTATTATGTCAATAACCCTCAATTGTTTCCGGCGGTCTCGGTCGGTTC
TGCTCGTGTATCTCTCAGGTGCATGGCAACAAATGTGACAAACTCAAATG
GTACTATTGCAAGGACCCCGACTACAAGGTTGAACGTGAGGACAAGGACC
AGTGGGACGTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig894:59223..61883-

>mRNA_P-littoralis_Contig894.19.1 ID=mRNA_P-littoralis_Contig894.19.1|Name=mRNA_P-littoralis_Contig894.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig894:59223..61883- (Pylaiella littoralis U1_48)
GGAATCGAAAGCGAAAGAGGCGGCATCTGTTGCCCGATCGGCTGCTCTAA
GTGCGGTGGGAAGCAGTGCGTCTCGGATGGTCCCGATCTTCCACGCGGCT
CCTGCTGCGGGTACCGCATCAGGGAGAACGGAGAGTACTGCGACGACACG
AAGGAAGCCCCCTGCATCATCGGCAAGCCCCCCGTTGAACCTCCGGTCGG
TGCCCCGGTAGCTGCTCCGGTCGCTGCCCCGTACGCTGCCCCGGTCGCTG
CCCCGTACGCCGCCCCGGTCGCTGCTCCGGCAGCTTGCCATGTACCGGGC
GCGACCTACGGCGACAACAAATGCGATCAAGAACTGAACAACGCTGAATG
TGACTATGACGGTGGCGACTGCTGCTTCTGCACGTGCGACGGAGATGTGC
ATGGCAACAAATGTGACAAACTCAAATGGTACTATTGCAAGGACCCCGAC
TACAAGGTTGAACGTGAGGACAAGGACCAGTGGGACGTC
back to top