mRNA_P-littoralis_Contig894.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig894.10.1
Unique NamemRNA_P-littoralis_Contig894.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig894.10.1 vs. uniprot
Match: A0A6H5K213_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K213_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.930e-20
Identity = 45/76 (59.21%), Postives = 51/76 (67.11%), Query Frame = 2 
Query:    2 VNV--DGSSSYVQAPAVGYCFDDFHLHVGNDLPTNV--------AAPGKYTQADFLQSGTFYIIVHVGKTCTPCEH 199
            VNV  DGSS Y   PA GYCFDD H+HVGN+LPT           APG+Y+Q+  L  G FYIIVHVG+TCTPC H
Sbjct:   64 VNVIQDGSSDYTVHPADGYCFDDVHVHVGNELPTKTKKSVTTPTVAPGQYSQST-LGVGDFYIIVHVGETCTPCGH 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig894.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K213_9PHAE4.930e-2059.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig894contigP-littoralis_Contig894:50839..51748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size267
Hectar predicted targeting categorysignal peptide
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791783.1109436-CDS-P-littoralis_Contig894:50840..508811680791783.1109436-CDS-P-littoralis_Contig894:50840..50881Pylaiella littoralis U1_48CDSP-littoralis_Contig894 50841..50881 -
1680791783.1254594-CDS-P-littoralis_Contig894:51525..517481680791783.1254594-CDS-P-littoralis_Contig894:51525..51748Pylaiella littoralis U1_48CDSP-littoralis_Contig894 51526..51748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig894.10.1prot_P-littoralis_Contig894.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig894 50841..51748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig894.10.1

>prot_P-littoralis_Contig894.10.1 ID=prot_P-littoralis_Contig894.10.1|Name=mRNA_P-littoralis_Contig894.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
RERRRLFFLRTGPCGWVLLRRLSPARGQRSPHKRGCSGKVHPGGFSPERH
LLHHRARGQDMHALRALNAENPTAVPCSGPRPCSCPGP
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mRNA from alignment at P-littoralis_Contig894:50839..51748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig894.10.1 ID=mRNA_P-littoralis_Contig894.10.1|Name=mRNA_P-littoralis_Contig894.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=910bp|location=Sequence derived from alignment at P-littoralis_Contig894:50839..51748- (Pylaiella littoralis U1_48)
CGTGAACGTAGACGGCTCTTCTTCCTACGTACAGGCCCCTGCGGTTGGGT
ACTGCTTCGACGACTTTCACCTGCACGTGGGCAACGATCTCCCCACAAAC
GTGGCTGCTCCGGGAAAGTACACCCAGGCGGATTTTCTCCAGAGCGGCAC
CTTCTACATCATCGTGCACGTGGGCAAGACATGCACGCCTTGCGAGCACT
GAATGCCGAAAACCCAACCGCAGGTGTGACCTCGATGCTGAAAAATGCAC
GATACGCACTGCACTCCGGCTGTGATGTTCCCTACTGTGTTGTACGTAGT
TTTCCCCGAAACACAGGGCAGGGCTTTTGACGTCTGTTGTTAACGAGCAC
ATCATATCCTTCGTTTGGCCAAGTTCTGTCGAACACAACCGGCAAAGAGT
ATCCCTCGCGCTCATTGCCTTGAAGAGATTCCACTCTTGCCGCCTCTTCC
CACCCCTTTCTCCTTCGTGTGTCTGCTCGATGTATGCCGAAGGATAGTTA
TTCGGATCAAAACTGGTTGTTTAGGGCGCTAGAAGTTGGGTGTGGTCTGC
TTCAAACGCTCTCGATATCATGGTGGGGACATACCTCTCCTACCACGGTG
GGGCATTCGCAGCCAGAGCTACCTCTGTCCGTAATGTGCTTTCCCGAGCC
ACAACAAATGTGTCCGTTCTAAGAGACGGTGTCGACGCCTTGCGATCTGA
GGGGTGGTCGTGCGAATTATTTCTGGAATGTTTCGTAAGGCCGGACATGA
ACGATTGTCGCCTGTTTACGCAACCTTAAGTCCAAACCTGCCGGCGCGGT
CTATCAACTTACCCTTTGTCTGCCACCGGTCTTCCCCGCCTCTGATGCCG
ACTCGTGCGTTGCGCAGTGCCCTGCTCCGGCCCCCGCCCCTGCTCCTGCC
CCGGCCCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig894:50839..51748-

>mRNA_P-littoralis_Contig894.10.1 ID=mRNA_P-littoralis_Contig894.10.1|Name=mRNA_P-littoralis_Contig894.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig894:50839..51748- (Pylaiella littoralis U1_48)
CGTGAACGTAGACGGCTCTTCTTCCTACGTACAGGCCCCTGCGGTTGGGT
ACTGCTTCGACGACTTTCACCTGCACGTGGGCAACGATCTCCCCACAAAC
GTGGCTGCTCCGGGAAAGTACACCCAGGCGGATTTTCTCCAGAGCGGCAC
CTTCTACATCATCGTGCACGTGGGCAAGACATGCACGCCTTGCGAGCACT
GAATGCCGAAAACCCAACCGCAGTGCCCTGCTCCGGCCCCCGCCCCTGCT
CCTGCCCCGGCCCC
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