mRNA_P-littoralis_Contig893.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig893.4.1
Unique NamemRNA_P-littoralis_Contig893.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Match: A0A6H5K6F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6F4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.750e-32
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 KEMTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGVPPPTFEEYLGV 189
            KEMTG +AFVNMKPQQKFLLSPVAKQY VATLLSN+HSC+NGGNEISQYFGV PPTFEEY+ V
Sbjct:   13 KEMTGKWAFVNMKPQQKFLLSPVAKQYLVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 75
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BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Match: A0A6H5KVK0_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.410e-31
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 KEMTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGVPPPTFEEYLGV 189
            KEMTG +AFV+MKPQQKFLLSPVAKQYRVATLLSN+HSC+NGGNEISQYFGV PPTFEEY+ V
Sbjct:  119 KEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 181
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BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Match: A0A6H5KY46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY46_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.580e-31
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 KEMTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGVPPPTFEEYLGV 189
            KEMTG +AFV+MKPQQKFLLSPVAKQYRVATLLSN+HSC+NGGNEISQYFGV PPTFEEY+ V
Sbjct:  168 KEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 230
[Close]
BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Match: A0A6H5JR24_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR24_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.880e-30
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 KEMTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGVPPPTFEEYLGV 189
            KEMTG +AFV+MKPQQKFLLSPVAKQYRVATLLSN+HSC+NGGNEISQYFGV PPTFEEY+ V
Sbjct:  213 KEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 275
[Close]
BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Match: A0A6H5K406_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K406_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.690e-30
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 KEMTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGVPPPTFEEYLGV 189
            KEMTG +AFV+MKPQQKFLLSPVAKQYRVATLLSN+HSC+NGGNEISQYFGV PP FEEY+ V
Sbjct:  155 KEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPAFEEYVAV 217
[Close]
BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.680e-30
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 KEMTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGVPPPTFEEYLGV 189
            KEMTG +AFV+MKPQQKFLLSPVAKQYRVATLLSN+HSC+NGGNEISQYFGV PPTFEEY+ V
Sbjct:  268 KEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 330
[Close]
BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Match: D7FZ44_ECTSI (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ44_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.260e-29
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 KEMTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGVPPPTFEEYLGV 189
            KEMTG +AFVNMKPQQKFLLSPVAK Y+VATLLSN+ SC+NGGNEISQYFGV PPTFE Y+ V
Sbjct:   59 KEMTGKWAFVNMKPQQKFLLSPVAKHYQVATLLSNWRSCMNGGNEISQYFGVVPPTFESYVAV 121
[Close]
BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Match: A0A6H5JR44_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR44_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.040e-29
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 KEMTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGVPPPTFEEYLGV 189
            KEMTG +AFVNMKP QKFLLSPVAKQYRV TLLSN+HSC+NGG EISQYFGV PPTFEEY+ V
Sbjct:  128 KEMTGKWAFVNMKPPQKFLLSPVAKQYRVGTLLSNWHSCMNGGIEISQYFGVVPPTFEEYVAV 190
[Close]
BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Match: A0A6H5KEG5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 6.010e-29
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 KEMTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGVPPPTFEEYLGV 189
            KE+TG +AFVNMKPQQKFL +PVAKQYRVATLLSN+HSC+NGGNEISQ FGV PPTFEEY+ V
Sbjct:   99 KEITGKWAFVNMKPQQKFLFNPVAKQYRVATLLSNWHSCMNGGNEISQCFGVVPPTFEEYVAV 161
[Close]
BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Match: A0A6H5K5I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.930e-28
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 KEMTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGVPPPTFEEYLGV 189
            K+MT  +AFV+MK QQKFLLSPVA QY+VATLLSNFHSCLNGGN+ISQYFGV PPT EEYL V
Sbjct:   20 KDMTSKWAFVDMKCQQKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig893.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6F4_9PHAE1.750e-3287.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVK0_9PHAE2.410e-3187.30DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KY46_9PHAE6.580e-3187.30DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JR24_9PHAE1.880e-3087.30DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K406_9PHAE2.690e-3085.71DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KB08_9PHAE5.680e-3087.30DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FZ44_ECTSI1.260e-2982.54DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JR44_9PHAE3.040e-2984.13DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KEG5_9PHAE6.010e-2982.54DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K5I2_9PHAE1.930e-2880.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig893contigP-littoralis_Contig893:7672..8018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G105
PFAMsDDE_Tnp_4
Model size347
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.18e-23
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size186
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791782.1709695-UTR-P-littoralis_Contig893:7671..76771680791782.1709695-UTR-P-littoralis_Contig893:7671..7677Pylaiella littoralis U1_48UTRP-littoralis_Contig893 7672..7677 +
1680791782.198933-UTR-P-littoralis_Contig893:7863..80181680791782.198933-UTR-P-littoralis_Contig893:7863..8018Pylaiella littoralis U1_48UTRP-littoralis_Contig893 7864..8018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791782.1869948-CDS-P-littoralis_Contig893:7677..78631680791782.1869948-CDS-P-littoralis_Contig893:7677..7863Pylaiella littoralis U1_48CDSP-littoralis_Contig893 7678..7863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig893.4.1prot_P-littoralis_Contig893.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig893 7678..7863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig893.4.1

>prot_P-littoralis_Contig893.4.1 ID=prot_P-littoralis_Contig893.4.1|Name=mRNA_P-littoralis_Contig893.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
MTGMFAFVNMKPQQKFLLSPVAKQYRVATLLSNFHSCLNGGNEISQYFGV
PPPTFEEYLGV*
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mRNA from alignment at P-littoralis_Contig893:7672..8018+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig893.4.1 ID=mRNA_P-littoralis_Contig893.4.1|Name=mRNA_P-littoralis_Contig893.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=347bp|location=Sequence derived from alignment at P-littoralis_Contig893:7672..8018+ (Pylaiella littoralis U1_48)
AAGGAGATGACTGGCATGTTTGCGTTTGTTAACATGAAGCCTCAGCAGAA
GTTCCTGCTCAGCCCTGTGGCCAAGCAGTACAGGGTTGCGACGCTCTTGT
CGAACTTCCACTCATGCCTGAACGGCGGGAACGAAATCTCGCAGTACTTC
GGCGTGCCGCCGCCGACGTTCGAGGAGTACCTTGGTGTGTAGGGTGTAGG
TGTCCCACAGTACGTTGATTGGTTGGTTATGAGGGTTACGTTTCCGTTTA
GAGACTGGGGCGCGGCCATACGGCGCACGTACCCGGCTACCTAGTCTTCG
GATGCATACGGCTGTATGCGCGCGTGTTTGGAAGGTAATTTCAGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig893:7672..8018+

>mRNA_P-littoralis_Contig893.4.1 ID=mRNA_P-littoralis_Contig893.4.1|Name=mRNA_P-littoralis_Contig893.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig893:7672..8018+ (Pylaiella littoralis U1_48)
ATGACTGGCATGTTTGCGTTTGTTAACATGAAGCCTCAGCAGAAGTTCCT
GCTCAGCCCTGTGGCCAAGCAGTACAGGGTTGCGACGCTCTTGTCGAACT
TCCACTCATGCCTGAACGGCGGGAACGAAATCTCGCAGTACTTCGGCGTG
CCGCCGCCGACGTTCGAGGAGTACCTTGGTGTGTAG
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