mRNA_P-littoralis_Contig893.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig893.3.1
Unique NamemRNA_P-littoralis_Contig893.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Match: A0A6H5JKI8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI8_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.820e-51
Identity = 82/107 (76.64%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:   55 MSRLRIRDRIARKTRALVTLQCRAMFELYSEWWFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIMLMLELLLIPPFIRTDCGFVVTRREA 375
            MSRLRIR+RI RK RA V L+CR +FE+Y++ WF YN+ FIYAMARLE+DDTPTS+ARRD TAFFSPQDCVNFLRFT  Q+MLML+LLLIP FIRTDCGFVV+ REA
Sbjct:   36 MSRLRIRERIERKKRASVMLRCRNLFEVYTDLWFVYNIAFIYAMARLELDDTPTSIARRDATAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTDCGFVVSGREA 142
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BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Match: A0A6H5KDJ0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDJ0_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 5.690e-43
Identity = 69/90 (76.67%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:  112 LQCRAMFELYSEWWFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIMLMLELLLIPPFIRTDCGFVVTRREALC 381
            L+CR +FE+Y++ WF YN+ FIYAMARLE+DDTPTS+ARRDVTAFFSPQDCVNFLRFT  Q+MLML+LLLIP FIRTDCGFVV+   ALC
Sbjct:    2 LRCRNLFEVYTDIWFVYNIAFIYAMARLELDDTPTSIARRDVTAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTDCGFVVSGSGALC 91
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BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Match: A0A6H5K4C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4C9_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.620e-42
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:  112 LQCRAMFELYSEWWFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIMLMLELLLIPPFIRTDCGFVVTRREALC 381
            L+CR++ E+Y++ WF YN+ FIY MARLE+DDTPTS+ARRD TAFFSPQDCVNFLRFT  Q+MLML+LLLIP FIRT+CGFVV+ REALC
Sbjct:    2 LRCRSLLEVYTDIWFVYNIAFIYTMARLELDDTPTSIARRDATAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTNCGFVVSGREALC 91
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BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Match: A0A6H5KRJ1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ1_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 7.260e-41
Identity = 68/90 (75.56%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:  112 LQCRAMFELYSEWWFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIMLMLELLLIPPFIRTDCGFVVTRREALC 381
            L+CR +FE+Y++ WF Y + FIYAM  LE+DDTPTS+ARRDVTAFFSPQDCVNFLRFT  Q+MLML+LLLIP FIRTDCGFVV+ REALC
Sbjct:    2 LRCRNLFEVYTDIWFVYKIAFIYAMVCLELDDTPTSIARRDVTAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTDCGFVVSGREALC 91
[Close]
BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Match: A0A6H5JV22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV22_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.100e-37
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:  133 ELYSEWWFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIMLMLELLLIPPFIRTDCGFVVTRREAL 378
            ++Y++ WF YN+ FIYAMARLE+DDTPTS+ARRD TAFFSPQDCVNFLRFT  Q+ML+L+LLLIP FIRTDCGFVV+ REAL
Sbjct:    8 QVYTDLWFVYNIAFIYAMARLELDDTPTSIARRDATAFFSPQDCVNFLRFTQSQVMLILDLLLIPAFIRTDCGFVVSGREAL 89
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BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.160e-35
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:  127 MFELYSEWWFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIMLMLELLLIPPFIRTDCGFVVTRREALC 381
            MFE Y++ W AYNM FIY MA L  DD  T VARRDVT FFSPQDC+NFLRFT PQIMLML+LLLIP FIRTDCGF V+ REALC
Sbjct:    1 MFEAYTDMWMAYNMAFIYTMASLVTDDAATRVARRDVTNFFSPQDCINFLRFTQPQIMLMLDLLLIPAFIRTDCGFAVSGREALC 85
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BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Match: D7G148_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G148_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 3.610e-35
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:  127 MFELYSEWWFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIMLMLELLLIPPFIRTDCGFVVTRREALC 381
            MFE Y++ W AYNM FI+ MA L  DD  T VARRDVT FFSPQDCVNFLR T PQIMLML+LLLIP FIRTDCGFVV+ REALC
Sbjct:    1 MFEAYTDIWMAYNMAFIHTMASLVADDVATRVARRDVTNFFSPQDCVNFLRCTQPQIMLMLDLLLIPAFIRTDCGFVVSGREALC 85
[Close]
BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Match: A0A6H5K6L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L3_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 7.180e-35
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:  112 LQCRAMFELYSEWWFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIMLMLELLLIPPFIRTD 345
            L+CR +FE+Y++ WF YN+ FI+AMARLE+DDTPTS+ARRDVTAFFSPQDCVNFLRFT  Q+MLML+LLLIP FIRT+
Sbjct:    2 LRCRNLFEVYTDIWFVYNIAFIFAMARLELDDTPTSIARRDVTAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTE 79
[Close]
BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Match: A0A6H5K9J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J5_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.540e-34
Identity = 61/85 (71.76%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:  127 MFELYSEWWFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIMLMLELLLIPPFIRTDCGFVVTRREALC 381
            M+E Y++ W  YNM FIY MA L  DD  TS+ARRDVT  FSPQDC+NFLRFT PQIMLML+LLLIP FIRTDCGF+V+ REALC
Sbjct:    1 MYEAYTDMWMVYNMAFIYTMASLITDDVATSLARRDVTNLFSPQDCINFLRFTQPQIMLMLDLLLIPAFIRTDCGFIVSGREALC 85
[Close]
BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.040e-34
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:   64 LRIRDRIARKTRALVTLQCRAMFELYSEWWFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIMLMLELLLIPPFIRTDCGFVVTRREALC 381
            LRIRDRIARK RAL+ +Q +  + LY+  WFA +   IY + RL +DD PT  ARR V  FFSPQDCV F+RFT  QI+LMLELL++P  IRT+CGFVV  REALC
Sbjct:   50 LRIRDRIARKKRALLPMQWQQSYSLYTSMWFASHFAVIYTLGRLAIDDIPTGAARRHVDNFFSPQDCVEFMRFTRDQIVLMLELLMVPAIIRTECGFVVGGREALC 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig893.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKI8_9PHAE1.820e-5176.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDJ0_9PHAE5.690e-4376.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K4C9_9PHAE1.620e-4274.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRJ1_9PHAE7.260e-4175.56DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JV22_9PHAE1.100e-3776.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL85_ECTSI1.160e-3575.29DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
D7G148_ECTSI3.610e-3575.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6L3_9PHAE7.180e-3575.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9J5_9PHAE1.540e-3471.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS57_9PHAE3.040e-3461.32DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig893contigP-littoralis_Contig893:5751..6828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZ45
PFAMsDDE_Tnp_4
Model size382
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.28e-42
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size381
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791782.1240103-CDS-P-littoralis_Contig893:5750..60441680791782.1240103-CDS-P-littoralis_Contig893:5750..6044Pylaiella littoralis U1_48CDSP-littoralis_Contig893 5751..6044 +
1680791782.1373723-CDS-P-littoralis_Contig893:6741..68281680791782.1373723-CDS-P-littoralis_Contig893:6741..6828Pylaiella littoralis U1_48CDSP-littoralis_Contig893 6742..6828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig893.3.1prot_P-littoralis_Contig893.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig893 5751..6828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig893.3.1

>prot_P-littoralis_Contig893.3.1 ID=prot_P-littoralis_Contig893.3.1|Name=mRNA_P-littoralis_Contig893.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
RELGSSRAGVNQASRNLIMSRLRIRDRIARKTRALVTLQCRAMFELYSEW
WFAYNMTFIYAMARLEVDDTPTSVARRDVTAFFSPQDCVNFLRFTSPQIM
LMLELLLIPPFIRTDCGFVVTRREALC
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mRNA from alignment at P-littoralis_Contig893:5751..6828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig893.3.1 ID=mRNA_P-littoralis_Contig893.3.1|Name=mRNA_P-littoralis_Contig893.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1078bp|location=Sequence derived from alignment at P-littoralis_Contig893:5751..6828+ (Pylaiella littoralis U1_48)
CGGGAGCTAGGCAGCTCGCGCGCTGGTGTTAACCAGGCATCACGCAACCT
CATCATGTCCCGGCTACGCATTCGCGATAGGATAGCGCGCAAAACACGAG
CTTTGGTGACGCTTCAGTGCCGTGCGATGTTCGAACTCTACTCGGAGTGG
TGGTTCGCGTACAACATGACCTTCATCTATGCCATGGCACGACTCGAGGT
CGACGACACACCGACCAGTGTTGCGCGGAGGGACGTGACTGCGTTCTTCA
GCCCTCAGGACTGCGTCAACTTCCTGCGCTTCACGTCCCCGCAGGTACGT
ACGTGCAAATAGTGCGTGTGTGTGTATGGGTGTGTGCGTGCGCGATAACG
CCCGCCCGCTCTCTTGCCTGCGTGTCGTGGGTTTTTCGCTGAAGTGAGGC
TCGACGTCGACACCGCTACCACCGTGTGCTTTCACTGTTGGGCATCCCTG
TGCTAGCATGCGAATCCTGCAGAACACAGTATCAGTGGAGGCCATACATG
CGTGCGGTGTTCTCTTGCCAAACTTGCTTTCAGAACACATGGAAATGCGG
CCCTGGTCTTCCTGCTGCTGTGCTGCTGATGTTGCTGGCTGCGAACACTG
CTACAGCAGTATTGGAGGGCATATGCGCGGTCTTTTACACGCACACTCGT
CAAACTTTGTCATGGACACGCCAAGTTCTGGTGTCAACTAGGCGAACTTC
AAGTTTTCGTGTTTTTCTCCGTTGCGAAACCTGCTGCGGTGGAGCACGTG
CGCGCTGTCTTCCGTAGGATATGACACCCCCGAAGACCATGTCCTGAAAA
CCGCTCTGCGTGATATTTTTTGGTGGCCTCAAGATGAATGTATACGTAGC
CTTGTTATGTAGTCCAACGCTAAGTAAGACGGTAACAGAAGATGCTGTCG
TAGGGAGTGTGTACTGCTGTGCTGCCAGTCATGAAATTTCTGCGGCGGAG
TTTCCTGATTTTGACGGCGCCACTGTGTTTGTGCACTGCAGATCATGCTG
ATGTTGGAGCTGCTGCTGATCCCGCCGTTCATACGAACCGACTGCGGGTT
CGTGGTGACCCGACGCGAGGCGCTGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig893:5751..6828+

>mRNA_P-littoralis_Contig893.3.1 ID=mRNA_P-littoralis_Contig893.3.1|Name=mRNA_P-littoralis_Contig893.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig893:5751..6828+ (Pylaiella littoralis U1_48)
CGGGAGCTAGGCAGCTCGCGCGCTGGTGTTAACCAGGCATCACGCAACCT
CATCATGTCCCGGCTACGCATTCGCGATAGGATAGCGCGCAAAACACGAG
CTTTGGTGACGCTTCAGTGCCGTGCGATGTTCGAACTCTACTCGGAGTGG
TGGTTCGCGTACAACATGACCTTCATCTATGCCATGGCACGACTCGAGGT
CGACGACACACCGACCAGTGTTGCGCGGAGGGACGTGACTGCGTTCTTCA
GCCCTCAGGACTGCGTCAACTTCCTGCGCTTCACGTCCCCGCAGATCATG
CTGATGTTGGAGCTGCTGCTGATCCCGCCGTTCATACGAACCGACTGCGG
GTTCGTGGTGACCCGACGCGAGGCGCTGTGC
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