mRNA_P-littoralis_Contig1208.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1208.7.1
Unique NamemRNA_P-littoralis_Contig1208.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1208.7.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.030e-9
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:  319 TYKAFRNQACYDAARSLNVQGMGVQVRRGKCFEKACQALWPGEAPVAQWCAAAFSEDN 492
            T+  FRNQ C+DAA+ L   GMGVQ+ R +CF +A +A++PG     QW    FS +N
Sbjct:  107 TFNVFRNQCCFDAAKKLRADGMGVQLARKECFTQAFRAVFPGNGTPDQWVETTFSAEN 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1208.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2E9_9PHAE1.030e-946.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1208contigP-littoralis_Contig1208:6859..13771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size758
Hectar predicted targeting categoryother localisation
Exons2
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.5738747-UTR-P-littoralis_Contig1208:6858..70651680789517.5738747-UTR-P-littoralis_Contig1208:6858..7065Pylaiella littoralis U1_48UTRP-littoralis_Contig1208 6859..7065 +
1680789517.60619-UTR-P-littoralis_Contig1208:13574..137711680789517.60619-UTR-P-littoralis_Contig1208:13574..13771Pylaiella littoralis U1_48UTRP-littoralis_Contig1208 13575..13771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.5836606-CDS-P-littoralis_Contig1208:7065..72001680789517.5836606-CDS-P-littoralis_Contig1208:7065..7200Pylaiella littoralis U1_48CDSP-littoralis_Contig1208 7066..7200 +
1680789517.5962627-CDS-P-littoralis_Contig1208:13355..135741680789517.5962627-CDS-P-littoralis_Contig1208:13355..13574Pylaiella littoralis U1_48CDSP-littoralis_Contig1208 13356..13574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1208.7.1prot_P-littoralis_Contig1208.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1208 7066..13574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1208.7.1

>prot_P-littoralis_Contig1208.7.1 ID=prot_P-littoralis_Contig1208.7.1|Name=mRNA_P-littoralis_Contig1208.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MQGGEGPPGHLRRAPSGAHSCCLDGVCEGNSREARECTYKAFRNQACYDA
ARSLNVQGMGVQVRRGKCFEKACQALWPGEAPVAQWCAAAFSEDNIQAES
DTEGDGDDVSQEPSPEG*
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mRNA from alignment at P-littoralis_Contig1208:6859..13771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1208.7.1 ID=mRNA_P-littoralis_Contig1208.7.1|Name=mRNA_P-littoralis_Contig1208.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6913bp|location=Sequence derived from alignment at P-littoralis_Contig1208:6859..13771+ (Pylaiella littoralis U1_48)
ATACCCGACCAAGGTGTTAGTGGAGAGCCTCAATCTTCCAGGTGGTGATC
GAGTTGTACACGAGCAGCTCAAGTTTGTGGCAGAACATCACACGGCTCGG
ACCAGGGCGTTCGCTACAACTGCAAGCCGCCTTGTGGGCCGGCTACACTG
CTCTCACGGCGTGGAGAAGCCCGAGCCTCTCCCTGTCATCAAAAACCGGG
ATGAGCGATGCAAGGCGGCGAGGGACCACCCGGGCACCTGCGGCGTGCAC
CAAGCGGAGCTCATAGCTGCTGTCTCGATGGAGTCTGTGAAGGCAACAGC
CGAGAAGCGCGGGAGTGTACGTACAAGGCCTTCCGCAACCAGGTGTGTGA
AACAGCTGAGAAATCGAGTGCGTCGGATCATCATGATGTGCAGCGTTAGC
CGCAGCACATGCATGCACAAAAGCAGAGATCAGCAGCAGTACTGCTACAA
CACTCGAAGTACTTCACGAATCGTGCGCTCCTGTCTGTGTTGACCATTCT
CTTGTGTTACCCCGCCTGGTGCTCTCTCAGAACACTTCGTACAGCAGCAT
ACAACGGCAGTAGCTTCGCGTCTGAGACATATGGGACTACAACACGCATC
ATACCTGGTAACAAAGACACACCCACACATGAACCACAAAAAACACACCC
AGACACTAAACGCGGTATGATACAAGTACTGCTGTAGCAGTGCTGTATGC
GGTGTGCTGACTGCGGCGTTGTGTGCGTGCACGCCGTACTCTCTCCCTTT
TCTTCTCTACCTTCACCTGACTCTGGGATTGCACGCTCCAGTTTTGAGTA
TGCATATACTCTACTACCTGTCTTGCAGTCTCTGTTGCTGCCGTACGTTT
GTTGTGCTTTGTGCGGTAATGTGTGCTCGGCCCTCGCATGGTGTTCTCGA
TCGCTTTCTCTCTCTTTATATTCATTTCGTGTGCTGTTTGTCTGCCGTAG
CAGTATATCTGCTGCCGAGAGAGACAGGGAGAGAGAGAGAGCGAGGGCAT
ACCTGTGTGCGTGATTCGCATCCATGTTGTGTGCTGGTCCCTACAACAGT
ACGTACTGCGACTCGCTGTGTATTCGTGTTTGCTTTCGACTGATGCCGCT
GTCCTGCGCTCTGCCTGTGTGCTGCTCGGTACTGCGGCCCGATGGGCCCC
TATAAACCTATAAATCTACGTCTGTGCCTGCTGTCTTGTTTGCCGTTGAC
CTTATCCCTTTGTTACTTGTGCTGTGTGTCCAAAGAAGTGGTCGGCAGGC
ATTATTGCAGGGTTTCTGGTGTAGTTGCCAAGGCGTTATGGCAGGTGCAG
CAAGTGCAGATAGGGGCTGCCTAAAAATACATCTTCTGCCAAGCCATTTC
AAACCTTCACGCCTGTGGGTGCACCCTACTTGTCTCTGCGCGAAAAGTAT
CGTGATGGAACAGCGTAACCTCAAATAGCCTCTACCCCACGACGGCGTTC
CGAAGAAATTAAGTTGTGAAACTTGATGCCCCCCCCCCCCTCTTCAGCTA
AAGCTAAGGTGCAAGCGGTACCCCTGGTAACCAACCGCCTGCAGCCAACG
CGGCGCACTTTTCACTGGCGGCAGGTCGTTAATTCGGTGATTATTATGTT
TCCTGCTTCCACATGCACCATGACCAAGATTCGTTATCGGGGACGACACC
ACGGTCTCCTCCACTTTGTACGAATTTCGATACGCCTCCACTACCAATAA
TCCACCAGCAATTTCCCTCTGAATGTAACATTTTTGAATCATTGTTAAAT
ACGAATTAGGTTTGTGATGAATCCCCCGCATGATGTCAATTTATAGTACT
TACAAGGGTTTCGGCGGCTGACGCCGCCACGGTCCTGACCGAATCCAAGA
TATAGAGGCACGCGGAAGGCCTGATGGTGGGACATGGCCTGGTAAACATG
TCGATACACGGGGTCGAAAATGGCACATACGACATACATACATACATACA
TACATACTCGAAGTATATACATTTTTTTCGTTGTAAAGATGAAAGAAAAC
GGGAAAAGGAAAGAAGAGTCCCGGGCCGCTATAACGAAAAAACAAACAAT
CCCACGACGATCGTACGTACATAATCCACAGCAGTAAAAAAGGCCACAAC
CGACACACACTCATACAACAGTAGTACCTACCTGCTGCATGAAGTATACT
ACTGCAGGGAAAAGGCAAGTCATGTGTGGTAATTCCCGAGGGCTAAACAC
TCTAAAACCCCTTTCGTATTACAGCAGGAAAGGAAAAATTGATACGGAGT
ATGAAACACCGGCGAAGAAGGGAAAGGGTGTAGGGTACGGATCACTGACG
ATTACAGCTGTCTGTGCGGGTTAAATGTCGGGAATTCGCAAGTGGGTGGG
TGGGGAGGTGGGAGGCAATTTTATTTAGTAAGCAAGACTATATATGATAC
GTTAAACAGAAATCGTTCCCGGGAGGTGGTACGTAGCCCGCCAGATTATG
CCACACACGACGCGGACACTTTGTTGTGGCTTCGAAGCCGGTGCCTACAA
TTCTTTTTCTGTTTTTTGTCTTTTTGAACGCCATTCCGTAGCCCTACAGA
ACTGATGGACCGCCGGAGCCCAGCGGGACACACACCAACAAAACCCAGCC
GAACCCGAACCCGAATCCTAAACCACGGAGGACTGCTAGGACACATAATA
TTATTATGTATTACAGCAGTATTATTAGTGGTCTTGTGTGAGGAATGGGG
GAGGGTTCCCCTCAAGAGACCTCTGCTACGAATGTACTCCATATTTATTT
ATTTGTTATATTGGGAGGGGTGGCCTTTTTACTACTACTTCTCGTGTGTA
TGATACTACAGCAGCAGCAGTAAACGCTGTTGTTGTTGTCGTTGTTGTTG
TGTTGTTGTTGATTTGATCTCAGGGCCCCCAACGGTTTACTGCTTGCTGT
GTGCGAGGATGCTTCCGCAGAGAGGAGAGTAGAGAGAGGCATCCCGGCCT
GGAGTATCATATAATATTGTTGATTCTCACACTAGCTCACCATACCGCCG
CAGTCAGTCTAGCCCGTGGTCACAAACCAGGCACATACAAATCGTGCTAG
GAGGAAAAAAATGATATGCATGTATGTATCTATTCATCACCGCGGGACAG
CAGTCAAATCTAACAACAACTTACAATATATTGATAAATAAATATGATAT
GATATCATCCTGGGCTTCCAGACCGAGCTGTAAAGAGGCAGACAGGTTAT
TATTGTTCGTTGTTGTTGTTGTTGATCTCGCATTAGCCCACCGCCGTAGT
CTAGCCCGTGGTCACAAACGACACGTACATATCGTGCTTTAACATAGGAG
GAAAAAAATAAAATATAATAAATGGACTATGATCACTCACTTCTTTTTTA
TTTTATTTTTTGTCTTTCGTCTGTTGATCATATATTTACTGGGCCATCGC
CCTGGTTTGCGTCTGCCTTGGTCTGTCATGGCCCTGGGCCCTGGTTCGAT
GCACGAAGTACTTCGAAGTATATGGTTGTGGTTGAGGTTTGTCTTGGTTA
TTTTTTGTTTGTCGGACTGTTTCCAATTTTTCTTTTTCTTTCGAGCCTGT
TATTATTTTTTCTGAATTTGTTTGGTATCCTGGCCACCACAGATGGTACC
CCAACGGTACCACGTCTGATCTGACTGTGGGTGATCATAGTCCATATATT
TTATTTATTTATTTTCCTCCTAGCACGATATGTGCCTGGTTTGTGACCAC
GGGCTAGACTGCGGCGGTAGTGATCTAATGTGAGAATCAACAACAACAAC
AACAACTCACAGCACTCAAATCAGATACATATGTGACATGGTTGGGGTAC
CATCCGTGGTGCCCAAAGTACCAAACAAAATACAGGAAAAAAACAGGTGC
TGGCCTGTGAGCGGTATTTTAGAGGTCCCACCCCCTTATAATTTTTACTA
CTGCTACTTCGTGCTCTGTGTTCTATGATACACTCTGCTACTGTTGGTTT
TTGATGAGGACCCCCAACGGACTACTACAGGAATTAATTGTCTGCTGTTA
GTCGTTAATAGTTGTGATTCAACCATATCAACCGCAAAGTGGTGGTTAGC
TGCGCTGATGATGATCTGGATCTGACGAGGGCTGGATATATATTGTTATT
TTGTTGTTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCGC
GTGGTCACAAACCAGGCACATATCGTGCTAGGAGGAAAAAAAATAAATAT
ATATATATGGACTATGATCACCCACAGTCAGATCAGACATTGTACCGTTG
GGGTACCATCTGTGGTGGCCAGAATAACAAACAAATGTGTACGACTGATT
TGTTGTTGTTGTTGATTCTCACATTATTAGCTCGCCGCAGTCTAGCCCGT
GGTCACAGACCAGGCACATATCATTCTAGGAAAATAAATAAATAAAATAT
ATTGACTCTGATCACCCACAGTCAAATCAGATATGAACTGTTGGGGTACC
ATCTGTGGTAGCCAGAGTACCAAACAAAATACAGAAAAAAAATAACAGGT
TCGAGAGTAATATGTAGACTTGTACTGCTGTGTACGTACGAACCGAGTAT
TATTATGTGTATCATACACCATACGCTGTTGTTATTGTTGTTGAGATGTC
CACGCATGATGCTGCGTGTACAGAAGAATAAAATCTGATCCATGATAATA
ATAGGCGATCGAATTTGTTATATTTATTAGACTTTTTTATGTCTGAGTGG
CAATCAATATGTATGGATCATACAGAGGAGGGGTGGACGATTTCGAATTC
ATTCCTGTTTCCCGCCGTGGTCTGTATATTATTAGACTATGAATGGATGT
AGTGTATGTATGTATCCAATTGATCCAATCCTACAGAGGAAGGGATGAAT
ACATGCCGTAGAAATCCCAATTAGAGTCTCTCGGGACAGACTGCCTGAGA
TCGGATGTGAACACCACACACACACCACACAGACTTGTGGACGATGGTGA
TGATGAGATGTGATGATGCACAAGGCCTGCGTGTCTACCACGCGGACAGG
ACATTTCACAGAGTGTGGGTCGAACGTCGAAGTCAAAGAAAGCATAAGTA
TTCAAAATGATGTGATGATGTAAATGAATGCAGCAGTTCTGCATTCATTT
TCCAAAAGCGAGAGATTTTTAGTGCGTCCCCCAGTCTGGTCTGTCTGTTC
CTCCTGCTGTTGTTAGCGGATAATCTCCTGATGATGATGTCAGCATACTG
ATCCAATATGATGTGATCCAAAATGAGAGTGTGGGTCGAAGTCAACGCCA
ACAAACAACAACAGCAGATCTGCCCAGATGAAAAGATGAGAATATGTGAT
GATGATGATAATAATAACGTACTCGTACAGCAAAAAAAGTGGAGAGAGAG
CAGGTGTCTAATGATGTGATATATGGAGTATATATATGTGATATGACAGG
GGTAGATAAATGATCCAAAACGATCTCCGTCCTATGATGCAGGAAAGATA
AACGACCCAATGTGATCGAAATTTTACCCAATATCATATGATGATACTGT
ATGTACAGGAAAAGAGGAAGGACGAATGAACCAAGATGATCGAAATGCAA
GGTTCCGCCGTGTGCTTATTTCAAGTGACATGCAGGAGGAACGGAATAAA
CACCCGAAATGATTCATGGATCCCAAATGATCCATATCAGAGGTCCGCCG
CAGTCTAATTTCATGTGCATATCTATGCGCAGATGAAAAGATGAGAAGAT
GTGATGATGATGACAATATCGTACTCGTACAGCAGAAAAAGCGGAGAGAG
CAGTTGTCTGCTGGGACATATTCGGAGTAGATGAGATGACAGGGGAAGAT
AAATGATCCGAAACGATCTCCGTCCTATGATGCAGGAATGATAAACGACC
CAATATGTGATCGAAATTCCCCAATATCTTATGACCACGTGCCGCCAGCT
GCGCCTGCCACAAAACCAACCTACTTGGTGTTACAGGAAAGGAAAGACAA
ATGACCCAAGATGATCGAATTTATAGGTTCCGCCGTGGTCTAATTTCAAG
TGTGATGATATGGTTTTTAATGTAAAGGCAACAACAACACAATGCAGGAG
AAATGGAATCAACACCTGTACGAGGAGTGGAATCAACACCCAAAATGATC
CATGGATGCCATATGATCGAAATCAGAGGTCCGCCTCAGTCTAATTGCAA
GTGATTTCATTCCTCGCCTGTGAGAGCTCTAGAGCAAAAAATGCCGGTTA
TGATCCTAATCAGAGGTCCGCCGTAGTCTAATTTCAAGTGATTCCATTCC
TTGCCTGTGAGAGCTCTAGAGCACAAAATGCCGGTCTGTCAGCGGCCTAG
GGCCACTCTAATTGTAAGTGAATTAAAAAAAAATGAAAATGCTGATCAAT
CAGCGAAATCGTAACTTGTATAACTTTTATTTTTGTCAGAGGATGTTTTG
CGCAAGATTTAATCATTTTGCGCTGACGGCCTGCACTTCAAAGCCGCGCC
CTACCACAACACCCCACACTATCTTCACCCTGCATGATTTTAAACAGGCG
TGCTACGATGCGGCGCGTTCTCTGAATGTCCAAGGCATGGGTGTACAAGT
TCGTCGCGGTAAATGCTTCGAAAAGGCATGCCAGGCACTTTGGCCCGGAG
AAGCTCCAGTAGCCCAGTGGTGTGCGGCGGCGTTCTCGGAGGATAATATT
CAGGCAGAGTCCGACACGGAAGGGGACGGCGACGACGTATCACAGGAACC
CAGCCCCGAAGGCTGACATCTGGCGAACTTGGGATGCTTATTAATATTGA
TGTTTGCTTTACAAGAGGCCTAAGGAGGAGCAAGTATTGCGCGTCGCCCA
AATTTGCTGTCATGTTACCTGCAACATGTTTTCTTACGCTAGCATCGCAG
CGTGGATTATCATGCGGGGAATCGCGCCGTCGCCACTTGTGGAGATGTTG
GGCTCGAGATGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1208:6859..13771+

>mRNA_P-littoralis_Contig1208.7.1 ID=mRNA_P-littoralis_Contig1208.7.1|Name=mRNA_P-littoralis_Contig1208.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig1208:6859..13771+ (Pylaiella littoralis U1_48)
ATGCAAGGCGGCGAGGGACCACCCGGGCACCTGCGGCGTGCACCAAGCGG
AGCTCATAGCTGCTGTCTCGATGGAGTCTGTGAAGGCAACAGCCGAGAAG
CGCGGGAGTGTACGTACAAGGCCTTCCGCAACCAGGCGTGCTACGATGCG
GCGCGTTCTCTGAATGTCCAAGGCATGGGTGTACAAGTTCGTCGCGGTAA
ATGCTTCGAAAAGGCATGCCAGGCACTTTGGCCCGGAGAAGCTCCAGTAG
CCCAGTGGTGTGCGGCGGCGTTCTCGGAGGATAATATTCAGGCAGAGTCC
GACACGGAAGGGGACGGCGACGACGTATCACAGGAACCCAGCCCCGAAGG
CTGA
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