mRNA_P-littoralis_Contig890.33.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig890.33.2
Unique NamemRNA_P-littoralis_Contig890.33.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE)

HSP 1 Score: 397 bits (1019), Expect = 4.350e-127
Identity = 213/306 (69.61%), Postives = 230/306 (75.16%), Query Frame = 2 
Query:  707 SGCPVQHSSSAPVSSSPG-ALGTVWGMLTG---GGGEQGDESGVPSISPAPTQXXXXXXXXXXX-----AGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIHNAVNEKGWEKVREWERARAEADIGGGDGREEGGGSGVAGRFDGVVPDPKLLRFTGRPQDTSPKAWIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKPPPGSTMPVAMHLDVRPALDSVDAAVDRTRMFYRKEVRPYLSGVLDAFKNDPGPPPSDQDAPP--PSAAR 1591
            SGCPV+H S+A  +++P   LG VWG LTG   G G  G+ S   + +PA  +                AGQE+PLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASA+DMPSTLAIHNAVNEKGWE V+EWERAR                        GV   PKLLRFTGRPQDTSPKAW+KS LLGYRPPFDRHDWVVKRADGTEARYVIDFYAGK PPGS+MPVAMHLDVRPALDS DA VDRTRMFY +EVRPYL+GVL+AFKNDPGPPPSD DA    PS AR
Sbjct:  123 SGCPVEHGSAATSTAAPAEGLGRVWGYLTGSIGGAGGSGEVSSATAPAPAAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXX-----XXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYSREVRPYLAGVLNAFKNDPGPPPSDHDAXXXXPSVAR 423
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BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 2.370e-119
Identity = 212/327 (64.83%), Postives = 227/327 (69.42%), Query Frame = 2 
Query:  710 GCPVQHSSSAPVSSSP-GALGTVWGMLTG--GGGEQGDESG--------VPSISPAPTQXXXXXXXXXXXAGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIHNAVNEKGWEKVREWERARAEA------------------------DIGGGDGREEGG---GSGVAGRFDGV-----VPDPKLLRFTGRPQDTSPKAWIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKPPPGSTMPVAMHLDVRPALDSVDAAVDRTRMFYRKEVRPYLSGVLDAFKNDPGPPPSD 1561
            GCPVQH S+A  +++P G LG VWG LTG  GG                 P +  A  +           AGQE+PLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASA+DMPSTLAIHNAVNEKGWE V+EWERA AEA                           GG+G   G    G+              VP PKL RFTGRPQDTSPKAW+KS L GYRPPFDRHDWVVKRADGTEARYVIDFYAGK PPGS+MPVAMHLDVRPALDS DA VDRTRMFY +EVRPYL+GVLDAFKNDPGPPPSD
Sbjct:  110 GCPVQHGSAATSTAAPAGGLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNA--RNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYGREVRPYLAGVLDAFKNDPGPPPSD 434
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BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA)

HSP 1 Score: 221 bits (562), Expect = 5.180e-63
Identity = 119/203 (58.62%), Postives = 138/203 (67.98%), Query Frame = 2 
Query:  893 QEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIHNAVNEKGWEKVREWERARAEADIGGGDGREEGGGSGVAGRFDGVVPDPKLLRFTGRPQDTSPKAWIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKPPPGSTMPVAMHLDVRPALDSVDAAVDRTRMFYRKEVR 1501
            Q +PLST+RQ S+IPK E  P HQP+  A  WVYPSEQQY+NA+KRKG++A   D+P  LAIHNAVNE+GW KVREWE  R              GG            DPKL  F GRP D SPKAW K+N+LGY+PPFDRHDWVV+ A G E RYVIDFYAGK  P    PVA+HLDVRPALDS DAA+ R  MF ++E+R
Sbjct:   19 QTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMR--------------GG------------DPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSADAALHRACMFAKEELR 191
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BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.700e-51
Identity = 102/209 (48.80%), Postives = 127/209 (60.77%), Query Frame = 2 
Query:  887 AGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIHNAVNEKGWEKVREWERARAEADIGGGDGREEGGGSGVAGRFDGVVPDPKLLRFTGRPQDTSPKAWIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKPP--PGSTMPVAMHLDVRPALDSVDAAVDRTRMFYRKEVRPY 1507
            A Q+  LS  R  S+IPK +F P+HQP K  EKWVYPSEQQYYNA+KRKGY  S +D+P+ L IHN VNEKGW +V+EWE                              P+PKL +F G+P   SPKA +  N++GY  PFDRHDW+V+R DG E RYVIDFY G     P    PV+++LDVRPA DSV A V R    +R+  +P+
Sbjct:   77 ADQKANLSVKRATSTIPKGDFTPEHQP-KATEKWVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSG-------------------------FPNPKLKKFMGKPTQLSPKARLL-NMIGYSKPFDRHDWIVERPDGQEVRYVIDFYGGARNINPSKPQPVSIYLDVRPAADSVSAIVARLSFSWRQRFQPF 258
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BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA)

HSP 1 Score: 192 bits (488), Expect = 2.710e-51
Identity = 121/253 (47.83%), Postives = 141/253 (55.73%), Query Frame = 2 
Query:  704 SSGCPVQHSSSAPVSSSPGALGTVWGMLTGGGGEQGDESGVPSISPAPTQXXXXXXXXXXXAGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIHNAVNEKGWEKVREWERARAEADIGGGDGREEGGGSGVAGRFDGVVPDPKLLRFTGRPQDTSPKA-WIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKPPPGSTMPVAMHLDVRPALDSVDA 1459
            SSGCPVQ  +S P SS    L             +   S VP  S                  Q +PLSTSR+ SSIPK++F P HQP+   +KWVYPSEQQY+NA+K KG+     D+   LAIHNAVNE+GW KV EWE                 GG G           PKL RF GRPQD SPKA W+   + GY  PFDRHDWVV+RADG+E RYVIDFY G+       PV+MHLDVRPALDS+ A
Sbjct:   62 SSGCPVQGRASPPSSSPVNPL-----------NNERQYSQVPQPS------------------QAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWE-----------------GGLGST--------PPKLKRFMGRPQDLSPKAAWLW--MCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAA 258
[Close]
BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Match: A0A7S0WSL6_9CHLO (Holocytochrome c-type synthase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WSL6_9CHLO)

HSP 1 Score: 179 bits (455), Expect = 1.230e-47
Identity = 101/196 (51.53%), Postives = 118/196 (60.20%), Query Frame = 2 
Query:  893 QEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIHNAVNEKGWEKVREWERARAEADIGGGDGREEGGGSGVAGRFDGVVPDPKLLRFTGRPQDTSPKAWIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKPPPGSTMPVAMHLDVRPALDSVDAAVDRTRM 1480
            Q +PLS  R  S+IPK EF P HQ  K    WVYPSEQ +YNA+KRKG++ +  DMPS +AIHNAVNE+ W ++  WE   A A                        P P L +F GRP+D SPKA +  N LGY+ PFDRHDW V R  G E RYVIDFY   P PG   P+AMHLDVRPALD+V A  DR RM
Sbjct:   59 QRIPLSIERVASTIPKDEFTPSHQ-SKTDPVWVYPSEQMFYNAMKRKGWQPNEVDMPSVVAIHNAVNERCWHEILTWEHLHASA-----------------------CPSPTLNKFEGRPKDYSPKARLL-NWLGYKLPFDRHDWYVNRC-GEEVRYVIDFYNAAPQPGQ--PIAMHLDVRPALDTVGALADRLRM 226
[Close]
BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Match: A0A7S4DXX3_9EUKA (Holocytochrome c-type synthase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXX3_9EUKA)

HSP 1 Score: 175 bits (444), Expect = 1.070e-46
Identity = 102/226 (45.13%), Postives = 130/226 (57.52%), Query Frame = 2 
Query:  803 EQGDESGVPSISPAPTQXXXXXXXXXXXAGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIHNAVNEKGWEKVREWERARAEADIGGGDGREEGGGSGVAGRFDGVVPDPKLLRFTGRPQDTSPKAWIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKPPPGSTMPVAMHLDVRPALDSVDAAVDRTRM 1480
            E    + +PS+S  P++            GQ MPL T R  S+IPK +F P HQ + +A  W YPS QQ+YNA+KRKGY+    DM S +AIHN VNEK W+KV EWE+   +                         P+P+L +F+GR  D S KA I +  +GYRPPFDRHDWVV R  G + RYVIDFY G  P  + MP+++HLDVRPA DS  A  DR R+
Sbjct:   14 ENNPSNQMPSLSQMPSR------------GQRMPLPTHRVESTIPKGDFKPSHQLEGKAN-WTYPSPQQFYNAMKRKGYQPKEEDMQSVVAIHNTVNEKTWKKVMEWEKMHLDK-----------------------CPNPRLEKFSGRANDQSLKARINT-WMGYRPPFDRHDWVVDRC-GKKVRYVIDFYTG--PSMTGMPLSIHLDVRPAADSFGAIWDRVRV 199
[Close]
BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Match: A0A2R5GNK2_9STRA (Holocytochrome c-type synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNK2_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.830e-46
Identity = 99/214 (46.26%), Postives = 126/214 (58.88%), Query Frame = 2 
Query:  890 GQEMPLSTSRQRSSIPKAEFNPDHQPQ-KEAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIHNAVNEKGWEKVREWERARAEADIGGGDGREEGGGSGVAGRFDGVVPDPKLLRFTGRPQDTSPKAWIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKPPPGSTMPVAMHLDVRPALDSVDAAVDRTRMFYRKEVRPYLSGVLDA 1528
            GQ  PLST+R  S IPK EF+PDHQ   +E+  W+YPSEQQ++NA+KRKG+K    DM   LAIHN VN+K W +V ++E    E D                         PKL+RF G+P++ SPKA ++S   GY  PFDRHDW+V R  GTE RYVIDFY G         V+M+LD RPALDS  + VDR RM +R+  +  L  +  A
Sbjct:   83 GQRFPLSTNRVESVIPKGEFSPDHQKHSRESSSWMYPSEQQFFNAMKRKGWKPREEDMRIVLAIHNHVNDKAWSEVSKYESMHPECDC------------------------PKLVRFMGKPKNLSPKATVRS-WFGYAKPFDRHDWIVDRC-GTEVRYVIDFYQGAQTSNPGEVVSMYLDARPALDSWGSVVDRARMQFREVFKAPLQALSSA 270
[Close]
BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Match: W4G7Q4_9STRA (Holocytochrome c-type synthase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7Q4_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.850e-46
Identity = 101/218 (46.33%), Postives = 135/218 (61.93%), Query Frame = 2 
Query:  893 QEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIHNAVNEKGWEKVREWERARAEADIGGGDGREEGGGSGVAGRFDGVVPDPKLLRFTGRPQDTSPKAWIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKPPPGSTMPVAMHLDVRPALDSVDAAVDRTRMFYRKEVRPYLS--GVLDAFKND 1540
            Q++PLST R +S+IP   F P HQ + + + W YPSEQQY+NA+KRKG+     DM   ++IHN +NEKGW  V  +ER     D  G D                  P+PKL+RF GRP+D SPKA   + +     PFDRHDW+V R +GTE RYVIDFY+G+P PG   P+++++DVRPALD+V  AVDR RM + K + P L   G+L + K +
Sbjct:   49 QKVPLSTHRVQSTIPMGSFVPQHQTEGQ-QTWQYPSEQQYFNAMKRKGWDPEERDMKVIVSIHNTINEKGWSDVVAFERT-LHPDAYGSD----------------KCPEPKLVRFMGRPKDFSPKARFLNTIGVANLPFDRHDWIVDR-NGTEVRYVIDFYSGQPVPGK--PLSVYMDVRPALDTVQNAVDRVRMQFHKSILPLLPFRGMLWSDKKE 245
[Close]
BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Match: A0A7S0WA24_9CRYP (Holocytochrome c-type synthase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WA24_9CRYP)

HSP 1 Score: 174 bits (442), Expect = 1.970e-46
Identity = 99/211 (46.92%), Postives = 126/211 (59.72%), Query Frame = 2 
Query:  893 QEMPLSTSRQRSSIPKAEFNPDHQPQK-EAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIHNAVNEKGWEKVREWERARAEADIGGGDGREEGGGSGVAGRFDGVVPDPKLLRFTGRPQDTSPKAWIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKPPPGSTMPVAMHLDVRPALDSVDAAVDRTRMFYRKEVRPYLSGVL 1522
            Q  PLST+R  SSIPK +F P HQ +  + E+WVYPSEQ ++NA++RKG+     DM S +A+HNAVNE+ W +V  WER          D   E              P P+L+RF GRP+D SP+A I S LLGY+ PFDRHDW V R  G + RYVIDFY GKPP     PV+  ++VRPALD  +  +DR +M  R  V  Y +G  
Sbjct:   20 QSRPLSTARVESSIPKDDFTPAHQAENSQKERWVYPSEQMFFNAMQRKGWNPKEDDMSSVVALHNAVNEQTWNEVLRWER----------DLHPE-------------CPQPRLVRFYGRPKDFSPRARIFS-LLGYKLPFDRHDWTVDRC-GKQVRYVIDFYHGKPP-ADGRPVSFFIEVRPALDDAEGLMDRVKMLARPIVGTYANGYF 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig890.33.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L219_9PHAE4.350e-12769.61Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
D8LGP6_ECTSI2.370e-11964.83Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
A0A835ZPE3_9STRA5.180e-6358.62Holocytochrome c-type synthase n=1 Tax=Tribonema m... [more]
A0A7S3HNG9_9STRA1.700e-5148.80Holocytochrome c-type synthase n=1 Tax=Spumella el... [more]
W7TBT6_9STRA2.710e-5147.83Holocytochrome c-type synthase n=2 Tax=Monodopsida... [more]
A0A7S0WSL6_9CHLO1.230e-4751.53Holocytochrome c-type synthase n=1 Tax=Pyramimonas... [more]
A0A7S4DXX3_9EUKA1.070e-4645.13Holocytochrome c-type synthase n=1 Tax=Lotharella ... [more]
A0A2R5GNK2_9STRA1.830e-4646.26Holocytochrome c-type synthase n=1 Tax=Hondaea fer... [more]
W4G7Q4_9STRA1.850e-4646.33Holocytochrome c-type synthase n=4 Tax=Aphanomyces... [more]
A0A7S0WA24_9CRYP1.970e-4646.92Holocytochrome c-type synthase n=1 Tax=Hemiselmis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig890contigP-littoralis_Contig890:88474..96647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGP6
Preferred nameHCCS
PFAMsCyto_heme_lyase
Model size2515
Max annot lvl2759|Eukaryota
KEGG rclassRC00727,RC02130
KEGG koko:K01764
KEGG ReactionR02480
KEGG Pathwayko00860,map00860
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004408,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006464,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009887,GO:0009987,GO:0016020,GO:0016043,GO:0016829,GO:0016846,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:1901564
Exons5
Evalue3.76e-125
EggNOG OGsKOG3996@1|root,KOG3996@2759|Eukaryota
EC4.4.1.17
Descriptionholocytochrome-c synthase activity
Cds size1263
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig890.33.2prot_P-littoralis_Contig890.33.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig890 89395..96316 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791780.6577475-UTR-P-littoralis_Contig890:88473..893941680791780.6577475-UTR-P-littoralis_Contig890:88473..89394Pylaiella littoralis U1_48UTRP-littoralis_Contig890 88474..89394 -
1680791780.7492545-UTR-P-littoralis_Contig890:96316..966471680791780.7492545-UTR-P-littoralis_Contig890:96316..96647Pylaiella littoralis U1_48UTRP-littoralis_Contig890 96317..96647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791780.6745713-CDS-P-littoralis_Contig890:89394..895321680791780.6745713-CDS-P-littoralis_Contig890:89394..89532Pylaiella littoralis U1_48CDSP-littoralis_Contig890 89395..89532 -
1680791780.6870394-CDS-P-littoralis_Contig890:91054..911931680791780.6870394-CDS-P-littoralis_Contig890:91054..91193Pylaiella littoralis U1_48CDSP-littoralis_Contig890 91055..91193 -
1680791780.7079344-CDS-P-littoralis_Contig890:93023..933701680791780.7079344-CDS-P-littoralis_Contig890:93023..93370Pylaiella littoralis U1_48CDSP-littoralis_Contig890 93024..93370 -
1680791780.72334-CDS-P-littoralis_Contig890:95617..957071680791780.72334-CDS-P-littoralis_Contig890:95617..95707Pylaiella littoralis U1_48CDSP-littoralis_Contig890 95618..95707 -
1680791780.7358572-CDS-P-littoralis_Contig890:95767..963161680791780.7358572-CDS-P-littoralis_Contig890:95767..96316Pylaiella littoralis U1_48CDSP-littoralis_Contig890 95768..96316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig890.33.2

>prot_P-littoralis_Contig890.33.2 ID=prot_P-littoralis_Contig890.33.2|Name=mRNA_P-littoralis_Contig890.33.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=421bp
MVDPSDADGSLHGNSSSGCPVQHSSSAATTAIDNDDGQQQQPPPLSGRLW
SGVASWLPFRGTSSTIAEISNSNEVTGNIATNSATGGGGSGGGGGGPART
AVATQENGQGGGCPANRCEDGGGASSGCPVQHSSSAPVSSSPGALGTVWG
MLTGGGGEQGDESGVPSISPAPTQAAAAAAAAAVAAGQEMPLSTSRQRSS
IPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASASDMPSTLAIH
NAVNEKGWEKVREWERARAEADIGGGDGREEGGGSGVAGRFDGVVPDPKL
LRFTGRPQDTSPKAWIKSNLLGYRPPFDRHDWVVKRADGTEARYVIDFYA
GKPPPGSTMPVAMHLDVRPALDSVDAAVDRTRMFYRKEVRPYLSGVLDAF
KNDPGPPPSDQDAPPPSAAR*
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mRNA from alignment at P-littoralis_Contig890:88474..96647-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig890.33.2 ID=mRNA_P-littoralis_Contig890.33.2|Name=mRNA_P-littoralis_Contig890.33.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8174bp|location=Sequence derived from alignment at P-littoralis_Contig890:88474..96647- (Pylaiella littoralis U1_48)
CGGTGGACCTGTGGGCGGCTTGGTGCTGTGAGGCCGGAATACGTGCCTAA
AGACCCCCGGAAGGTGCCGCATAGGCTTGGCATGGTGCCTGAACGACCTG
CCGAGGCGCAAAAATGGAGTTCTGAGGGGTTGGGGCTGCTTGCAGGCAGC
CTCCGTGGGCGTATTTTTGATATACCCCCGTTTGTCTGAAAGGGGCGGGG
GTATACCCCTGTTTGTCCATTTCCCTTTTTTTTTTCCACCTGAGCTGGCA
CCAGTGCAGTGTAGTGATTGTGTGATAGTCACCAGAGCACCGGGTACACC
GACAAACCGGACGCAATATTGACGATCAAGCATGGTAGACCCAAGCGACG
CCGACGGAAGTTTGCATGGGAATAGCAGTAGCGGGTGTCCAGTGCAACAC
TCGTCGTCTGCTGCAACAACAGCAATTGATAACGACGACGGGCAACAGCA
GCAGCCTCCTCCATTATCAGGAAGACTCTGGTCAGGCGTTGCTTCGTGGC
TTCCCTTCCGTGGCACCAGCAGTACCATCGCCGAAATCAGCAATAGCAAT
GAAGTGACGGGAAACATTGCTACTAACAGCGCTACTGGTGGTGGTGGTAG
TGGTGGTGGCGGTGGTGGACCTGCTAGAACAGCAGTAGCGACACAGGAAA
ATGGACAGGGAGGAGGCTGCCCGGCGAACAGATGTGAGGACGGAGGCGGA
GCGTCTTCTGGCTGTCCAGTACAGCACTCTTCCTCGGCACCAGTATCCTC
ATCACCAGGAGCATTGGGAACTGTTTGGGGAATGTTGACAGGCGGTGGTG
GAGAACAGGGGGATGAGAGTGGTGTTCCTTCTATATCTCCGGCGCCAACC
CAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCAGCAGCGGA
GTATAACGCCCTCAACAACGAGTACGTGTACGGGCAGGAGGTGGCCGCGG
GGCAGGAGATGCCCCTGTCCACGTCGAGGCAGCGGTCGTCGATTCCGAAG
GCGGAATTCAACCCGGACCATCAGCCTCAGGTGCTTCAGTAGCTATCTAC
GAAGTACCTGGTGTGCATTTACGGGCGTGGTGTATCGTACCGCTGAATAT
ATCATAGACAGATGAGTGTTTACTGCTGTGCTGCGGCGGCACGTGGTGAT
GGCCTGTAGCCGGAGCGTGGCGTGTGTGCTTGCGGGCGGGGGCGGTGTAT
GCGAAATTCATGTGTCACTTACGGACAAAAAGTTACAAGGAGATTCCAAT
GCCGCAAAAGATAACCACAAGACACGCACGGGCCCGCATAACTTCGAGGC
TTCGAGGTGCATGACTTCACACTTGTATCACTTCATATAATATATACGTG
TCACACCCCTATTGTTATTCCGGTACGTGACAACACCACCTTTTTCGGCA
GACTCGACCCTGGACCCTCACGTGCCCTCCGTTATGAGGACTTCCTGGTC
TTGAGCGATTGCGTAAACGATTGAGCCTAATGGAGGTTGATAAAGGGTTG
CCTGACAAGGGCGGTAAAAAATTCCTTACTGAAAAAACAATTTTTTGATC
TGAAAGAACATTTTCTTTAATCAAGTCAAATGAGCTTATTTTGACCAGGC
TTAAACATGGGCTGTCGTCTGTGCGTACCCGATAACAAGGATTAAATCAG
GAGAAGACGTCATGAAGTAGCTTCATCTGCGTCGGCGCATTCAGATCTTC
TACTTGGGCTTAGTTATCGAAGTTCGCAGCATTGGCACAAGAACTCCGCA
GGATCGCTGAAAAACTCCGCAATCCGGACTGACTCTAAACGTTTGACGCA
GCTGTACTCGCCGCCATCGGCATCAATCTTCTAAACTGCGGTTCGTCCGA
GGTAGCTATTGACATGAGCCACTGCTGTTGACCCGTAGTTTTGGAGGTTA
GAGTATGTGGCGTCGAGTACAGCAGTGGGAGATAGCACAGCAGTGGAAGA
TGATTTTTGGAATCTGTCCATTTTGCGGAGTTTTTTATCCTCTACTGCGA
CCATCGACATCTAAGCCCCAGCAGCAGCTCTGAATGCGCCGACGCAGATG
TAGCTACTACATGACGTCTTCTCCAGATTTAATCCTTGTTATCGGGTACG
CACAGACGACAGCCCATGTCAAAGCCTTTTCAAAATAAGCTCTTTTGATT
TGATTTTAGACTCGTTACAATTTTTATCTTGATATTTATGGAAGAGATTG
GAGGTGGACAGTGATATGCATGTCAAGAGGAGCCCCCGCCGCCGCCGTGT
GCGATAACCAACCGTTTCCCTCTTTCCCGACACCTTCCTACTGGTGTGAG
GTACCCAGTGTTTGAGTGTCAGGGCCCGTTCACTGTTTTTCAAAATCCGT
GCCTCTCGACGATCGGTTGTCAGGGAACCCTTAAAGGTTGAGGGCAGGTT
GGCGGAGGGTTGAGGGCAAGTTGGCGGAGGGAGCTTCGTTTTGAGGTAAC
GCTGGGGTAGAGAATGCTCTGAGAACCCGCTCGTTGGATTCCCCGCGACA
AGAAGAAACTACGACACGGATCGACACAGATGACATGCGGGTGTCTTGAC
GTACATACTTTGGATTTCTCGTTGTTTGCGGATTCGCGCCCGTACTTTGT
ATCGGAGCTCGCTGTGTGTCTCATTGAAGCTCATGACGTGTCTTTGCAGC
TGCGAGACCAGCACATCCACTGGCCTGTACCACTGTGGTCTGTATATATG
TGTTGTCATCCCATATTCTCCGGCACACTAGTCTGCACCCTGCGTTTCAA
ACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGACGGTCAACACA
GGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTC
TCGCGAGTAGGGATCCGCGGTCCCTACCCTCGTCGTCGAAGCCGAATCTG
CTTTAACTAACAGCATAGCCGCTTTCGAAGTAGCAAAGGAACACATTCAC
CGGGAATCGAACCCCCGTTCCTCTGCATCTAGTGGTTAACGAGGGGACCA
CTAGTCCACCGGGGCGACCGGTGTATGTATGATACGCAGGGATTCCTCGC
GTACTTAGGCTTGAAAAACAGGGACGCCATAGGACCATGCACCATACCGC
TGCACCGCTCATTTATTCAGGCCATCAGCGATCGACCGACAGCACCACCA
ACAACTGCTTCATTCGAAGGCTGCCCCCGCTCATCACCCCCGCCCCCCGC
CCCTGCCCCCCTACTTTCCATTTTCCATTGTTCCACATGCCCTACGTGCT
GTACCGCCGCCGTCTCACACACAACAGAAGGAGGCCGAGAAGTGGGTGTA
TCCGTCCGAGCAGCAGTACTACAACGCGATCAAGAGGAAGGGGTACAAGG
CCTCTGCGAGCGACATGCCGTCTACCCTCGCCATCCACAATGCTGTCAAC
GAGAAAGGGTGGGAGAAGGTTCGGGAGTGGGAGAGGGCGCGCGCAGAGGC
GGATATTGGGGGTGGGGATGGGAGAGAGGAGGGGGGAGGATCGGGGGTGG
CGGGAAGATTTGACGGCGTCGTGCCCGACCCGAAGCTTCTCCGCTTTACC
GGGAGGCCGCAAGACACGTCGCCAAAGGCCTGGATAAAGTCGAACCTTCT
TGGCTACCGCCCCCCTTTTGACAGGTGATCTCAAACAACAAAATGTTTTG
ATATTGTACAAAAGCCGCAGTAGGAGTAGTACGGGCGAATACTCGTGCTG
TGTCTCTGCCGTCGTTTTTGTATATATATACTTCGAAGTACATATTTATT
TTCGGGATCTGAGTCTTTTCTCAATCGTCGTCTCTGCTAAACCAACAGTC
TGCGTACGTTTTGTGATGGAGTGCGTGCACGCGCCCGGGCTATAGTAGCA
GATACTTTCGTACAAGTTAATACTTAACATTCACTTCGTATTGGAAGTGT
GTGCACGCGCCCGGGCTAAAATAGTACTACCTGGTACAAGTTTATACATA
TGGTTATTTCTCGTTATCGCGGATCTGGTTTAGGTGCGTATGGGCCGCGG
GCGTGGGAACATCTGACACCAAAAGTTTTATCGTAACACACGCAAGACCG
CGGCGTCGTGGTTGTAGGAGGGTCGCGCGAGGGAGGACTTCCTCATGAAG
TTGCGTTATTAGTTGAGGCGGCACGTGATAAGCACGTGATAAGCTTGCGT
CCACGTTGAAGCACGAGGCGGGGCAGTTTGTCCTGCTTTTTTGTGCACGC
ACATATCATACCACACACACCCTTCGGGCTGGTTATTCGTAGACCGGTTT
CATGTGAATCTCCAAACACATGGTTGTTGCTGCTCTACTGTAGAGCACGA
CAACAACAACAACAATAACAACAACGACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACACAACA
GCAGTAACGACAGACAGACATACCGGTAATATAGAACCCAATGCGCAGAG
CACCCGATATGCAGAGCCGATAGACGTCGGAAAGCAGAGAGCAATACGAT
GTGTTTATAATGGAGAGGCAAACACACAACGAAGACCATGAAAGGCGCGG
CCAGACAGCGATGATGGCAAAAGCTTGGTCTCTGCCGCAGGTCTCGCGGC
CTCGTGACCGGCGAACAGTTGGCCTCTGTCGGTAGGCCCAACAGCAGGCG
CGGACAAGCCCGCCACCGCAGCTCTCGCCCCGCTCGTCGCCCCTTCTATG
CCTCTTTTGTGTAGTCTGTGTCCTCGTGTTTGTAACACGGAGTGCTAGTG
GAAGGGTTGGAGGTACGGTCGTCCTGCCGGTTACCATCGTATGTTTCGCG
TAGGAAGATGTGTATTTTGGTGCTCTTTGGCGGGAGCAGCAAGCGTTTCC
TGCGGGAGGAATAGCCGGGGGAAGGGCCTCGTTGTTCGACAAAACAGAGT
ACATGTCCAAAATCAGAGGACAGCGGTTCTCCCGAAAAGTAGCACCCGCA
GGGTGCACCCAGCCCATTTTACGGTTTCGCAGGGCGAACACGAGCGTCGA
TCAATCAGCCCAGCTCGTTTCACGCTGGAGCACAACGTGTGCACCCTGCT
GCGTCGCATAATGACCAGGGTATTTACACCCTGGTATTTACACCCTGTTG
TGTCGTTTCCCTTCTTTTTTTTTCCTTTAAAAAAGTCAACCCCGCTCGTT
TCTTTGCATTATTATATTGCAGTTCTTGGTTTCGGTCTCACCTTGCCTGG
CTCCAGCAATACCTCTTTTTCGTTTTTTAATCCACAGGTGCAGTAGCACA
TAATTCGATTTCGGTGTCACATTGCCTCGCTGCATCCATCCACTGATCCA
TCCATCCATCCATCCATTCACCCATCCATCTATCCATCCATCTACCAATA
CGTGTGAAAATCATAATTTCATCCATCCTTCCATCCATCCATCTACCAAT
ACGTATGAAAATATTGCCGCCCTCCTCCCCCCCCTCCTCGCTCGGATTTC
CCAGGCACGACTGGGTGGTGAAGCGGGCAGATGGAACGGAAGCACGCTAC
GTGATCGACTTTTACGCGGGGAAGCCCCCGCCCGGCTCCACCATGCCGGT
GGCGATGCACCTGGATGTGCGGCCGGCTCTCGACTCCGTCGATGTAAGAC
AAGACAAGACCCATTACACGAGTATCGTTCATTTCGGGCTGCACTATTTT
TTCAAATGTCAACTGTATCATTTCTTGTTTCCGTTTTTTCTGTGACGACA
TGTCTGCAATATGATCGCGCGGATTCGTTCCGTCGGATGTGTAGATGTGT
GAGACCGTTTATACTCGAGCTGTCATGACTGTTTTGCTGTACGGTACCTG
GCACCGCTCATGTACAAGTACAAGTTTGTGTGTGTTTTTGTGTGTGTGTG
ACAAACGGCTGCAGTTGTTGTTTTTTTCCGGCGTGCTTGGGATGAAAGTG
TTTGACCTTATTTCTGTGTCACCAAAGCGGCGCGCGCCCAACGCATGCCG
ACAATATCTTGACTAGGGTCCAGAACAAGATGAAATGACGGCACACCCGC
GCCCACACTTAAGTATTTCGTGCCGACGACTGCAATTTGTGTTTCGGCAT
GACGCGTGCACTCGTATCACAAGTGCCTCGCGGCAAGCGACGTGCGCGTT
CGATATGATATTTATAGAGAATGCATATTGTCTATTCGTGTTAAGTCATG
AAGGACAACGCCCCTGTGCTCTTGGACGCGTACATGGCCTGCCCTCGGTC
ATTGGGTTGTCATTTTTTGCCTGTTTTGTACGGCTCTGGTACTTTCATTG
AATACCATGCATTATTTTCTTTCTATTCGGTTGAGATTTGTTGTCATCCC
ATCTAATCTGAGTTGCAATCCAGACCTTTTGGTACATGTGGGCATATCAC
CCGGAGTTCACACAGGAAGAAAAAGGACTGGAAAAAAGGTACCAGGTACT
TGTTAGCACCGATTGTGAAAGGGATAGGTCGATACGTACTCTACATACGC
ATATACACAGCAGTACTTGACAATACAAAAATAGTGCAGCAGCAAGCACC
ACCCAAATGATACGGCCGGTTCAAGGCCGGTCACCCAGACAAGAAACACA
AGGAGGTTTCACTGTCAGAGAGAAGGGGGTGGAAGCGTGCCGCCAAGAAT
ATTTCGAATGAAGTGCCTCCCGGCTTACATGTCAACCAGTGGCATGACAC
AAAAACACCACGTGCTTGTTTCCTTTGTTTTTTCTCTTTCCCTCTCGTGG
TCTACGATATTGGCCCGCACCCTATCTCCTTGTCGTTGTCGCTGTTGCCG
CCGTTATCGTCGTCGGTGTCATTGTTTATGTTGTTCTTGTGATTTCTCGT
TGTTTCGTTTTCGCCAGTAATGTTAAGGGAGCCGTCGCGATCTCTCTCTC
TCGCTCTCTCTCTCTCATTTAAGAAACAAATAACAAAACTTCCATGACCA
TAAAGGCTACCATAACCATTGTATCATGGCCCAAAGCCAATACACGGCCG
CACTCGCAGACACACTCACATACTCACTTTTATACATGCATATACACACA
CACGTGTATGTGCACTTTTATTTTATTTGTTCACCCGTCCGTTCGCGTTC
CGTGCGTGTACAATACGATACTTCGTATGATATTAACATTATACATCATG
CAATATGAAATACAGGCGGCCGTCGACCGAACTCGAATGTTCTACCGCAA
GGAGGTCCGCCCATACCTGTCCGGCGTGCTGGACGCTTTCAAGAACGACC
CAGGGCCGCCGCCGTCCGATCAGGACGCACCCCCCCCCTCGGCCGCGCGG
TGACACGTCGGACGCCTCTCGTTGCCGGTGCTTTTGTTGGCGGTTGTGCT
TGTGATGGTGGTGGTGGTTCTGGTGGTGGTGGTGGCCGTGGTGCTGAAAA
TTATGATGTGGCAAGACTGCTTCGTCTACCGATTACTTGCAGTACGCCGT
GTGTGTTGTGTGCCTGTGCCTGTGCCTGTGCCTGTGCCTGTGCCTGTATG
TGTTGTCATCCCGTCTCTTCCGGACGCAAGTTAGTCGTTTTTCGTATATT
TGGGCACATCAGCCGGGTCGACAAACAGAATAGAACGTCAACACATTGCA
CAAGTTATTTTCCGTTTTTTCGTTTTCCGTTTTTTCGTGATGACCAACGG
TAGTATGTTCTCTGTTCATATTATGTTACGTACTGGCGCTTATCGTTGCT
GGTGCTTGCTCTTGAGGATATACATGGCGTGTGACAGGCTCGGCTGTCGC
AGCCAATAGTTCGGGGAAAATACAGCTTTTCTTGTTCTGTTTATGGTTGT
GCCATTTCGACGGCGCTGATTTGTACTATTATACACGAAGTAGTTTGCGA
CCAATGAGGCCTCTCTGCAGCCGCGCGCCTCCTTTTGCAGCTACCAGTCA
AAGGTTCTCAACACCAAGGGTCACTACTCCCGCGTCGTTCGCTCAGGGTA
AGCTTTACCCCCCGGTATAATAAACAGGAATAATGTAATGATTATCGTTG
TCTGCGCCCCTCTTCGCCGGGAAGTGGGTGGGATGGTCTGTGTTTTTCCC
TCTCCTCCCGCTGCTCTGTGGTGCTTTCTTGTAACGAGGCTTTGCCACAC
CCGAGTTGGCTGTCTCACAGACGAGCGGTGCTGCCTCGCTCTTTTACGCC
ACAATATTGAAGCCGTCCCTCAACTCGGGGACGCTGTTCTATCGCCCCCC
CCCCGTGTTTGAACTGAGATCTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig890:88474..96647-

>mRNA_P-littoralis_Contig890.33.2 ID=mRNA_P-littoralis_Contig890.33.2|Name=mRNA_P-littoralis_Contig890.33.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1263bp|location=Sequence derived from alignment at P-littoralis_Contig890:88474..96647- (Pylaiella littoralis U1_48)
ATGGTAGACCCAAGCGACGCCGACGGAAGTTTGCATGGGAATAGCAGTAG
CGGGTGTCCAGTGCAACACTCGTCGTCTGCTGCAACAACAGCAATTGATA
ACGACGACGGGCAACAGCAGCAGCCTCCTCCATTATCAGGAAGACTCTGG
TCAGGCGTTGCTTCGTGGCTTCCCTTCCGTGGCACCAGCAGTACCATCGC
CGAAATCAGCAATAGCAATGAAGTGACGGGAAACATTGCTACTAACAGCG
CTACTGGTGGTGGTGGTAGTGGTGGTGGCGGTGGTGGACCTGCTAGAACA
GCAGTAGCGACACAGGAAAATGGACAGGGAGGAGGCTGCCCGGCGAACAG
ATGTGAGGACGGAGGCGGAGCGTCTTCTGGCTGTCCAGTACAGCACTCTT
CCTCGGCACCAGTATCCTCATCACCAGGAGCATTGGGAACTGTTTGGGGA
ATGTTGACAGGCGGTGGTGGAGAACAGGGGGATGAGAGTGGTGTTCCTTC
TATATCTCCGGCGCCAACCCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TGGCCGCGGGGCAGGAGATGCCCCTGTCCACGTCGAGGCAGCGGTCGTCG
ATTCCGAAGGCGGAATTCAACCCGGACCATCAGCCTCAGAAGGAGGCCGA
GAAGTGGGTGTATCCGTCCGAGCAGCAGTACTACAACGCGATCAAGAGGA
AGGGGTACAAGGCCTCTGCGAGCGACATGCCGTCTACCCTCGCCATCCAC
AATGCTGTCAACGAGAAAGGGTGGGAGAAGGTTCGGGAGTGGGAGAGGGC
GCGCGCAGAGGCGGATATTGGGGGTGGGGATGGGAGAGAGGAGGGGGGAG
GATCGGGGGTGGCGGGAAGATTTGACGGCGTCGTGCCCGACCCGAAGCTT
CTCCGCTTTACCGGGAGGCCGCAAGACACGTCGCCAAAGGCCTGGATAAA
GTCGAACCTTCTTGGCTACCGCCCCCCTTTTGACAGGCACGACTGGGTGG
TGAAGCGGGCAGATGGAACGGAAGCACGCTACGTGATCGACTTTTACGCG
GGGAAGCCCCCGCCCGGCTCCACCATGCCGGTGGCGATGCACCTGGATGT
GCGGCCGGCTCTCGACTCCGTCGATGCGGCCGTCGACCGAACTCGAATGT
TCTACCGCAAGGAGGTCCGCCCATACCTGTCCGGCGTGCTGGACGCTTTC
AAGAACGACCCAGGGCCGCCGCCGTCCGATCAGGACGCACCCCCCCCCTC
GGCCGCGCGGTGA
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