mRNA_P-littoralis_Contig890.5.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 192 bits (488), Expect = 1.400e-53 Identity = 89/109 (81.65%), Postives = 96/109 (88.07%), Query Frame = 1
Query: 1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAAEHCSFQTHAAILGFVHWIKGPNEGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIPCQAAPVG 327
LSTDYIQRML+ VMR+L +AHPDKAFDVVAT+CDGA EH SFQTHAAILGF HWIKGP EGSFA F +GF HPVHLHEVFNMSDPMHILKKIVNALWHSDIP + +G
Sbjct: 710 LSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLG 818
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 188 bits (478), Expect = 3.870e-52 Identity = 87/109 (79.82%), Postives = 94/109 (86.24%), Query Frame = 1
Query: 1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAAEHCSFQTHAAILGFVHWIKGPNEGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIPCQAAPVG 327
LSTDYIQRML+ MR+L +AHPDKAFDV+AT CDGA EH SFQTHAAILGF HWIKGP EGSFA F +GF HPVHLHEVFNMSDPMHILKKIVNALWHSDIP + +G
Sbjct: 619 LSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLG 727
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE) HSP 1 Score: 157 bits (396), Expect = 2.890e-41 Identity = 83/149 (55.70%), Postives = 91/149 (61.07%), Query Frame = 1
Query: 1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAA----------------------------------------EHCSFQTHAAILGFVHWIKGPNEGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIPCQAAPVG 327
LSTD+IQRML+ VMR L +AHPDKAFDV+ATVCDGA + SFQTHAAI GF WIKGP EGSF SF +G HPVHLHEVFNMSDPMHILKKIVNALWHSDIP + +G
Sbjct: 477 LSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGAPGQLGEVTLVVAKWMTLERPCVEPYFMIGPFPLVAPSRTPLDSRSFQTHAAISGFCRWIKGPQEGSFTSFKVGILHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLG 625
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI) HSP 1 Score: 113 bits (282), Expect = 2.450e-27 Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAAEHCSFQTHAAILGFVHWIKGPN--EGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIP 306
L+ + RML +M L AH DK FDV+ TVCDGAAEH SFQ + A + F W +G + E F + F+HP H VFNMSDP+H+LKK+VNALWHSDIP
Sbjct: 81 LTGPKLARMLDDIMTSLYQAHSDKNFDVIGTVCDGAAEHRSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDPVHLLKKVVNALWHSDIP 184
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE) HSP 1 Score: 102 bits (253), Expect = 7.100e-22 Identity = 53/103 (51.46%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAAEHCSFQTHAAILGFVHWIKGPN--EGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDI 303
LS I RML + L AH DK FDV+ TVCDGAAEH SFQ H A F W K + E + + F+HP H VFNMSDP+H+LKK+VNALW+S +
Sbjct: 467 LSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRSFQQHFATTTFSEWAKSDSVFEQRHKDYPVAFKHPHHDGPVFNMSDPVHLLKKVVNALWYSGL 569
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 6.370e-13 Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 2
Query: 308 AKQRQLGMWCVTDQDELEFSQFSLKTAQRVYNDVEYDNDSMTPEERAATLTIFPGIPVAAFNRTNFTCMNVKLSAKV 538
+K+R+L MWC ++ + +FSL TA+RVYN VE D ++++ EE+ A++T F + + FNR ++ CMNV SAKV
Sbjct: 405 SKKRELAMWCGDEEGNTDLVRFSLATAERVYNQVENDGNTLSQEEKVASITTFRKVVPSCFNRNSWNCMNVSYSAKV 481
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.030e-11 Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 121 SFQTHAAILGFVHWIKGPNEGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIPCQAAPVGDVVRHRPGR 354
SFQ AA + F + +G +E SF++F + RH VHL +FN+SDP H++KKI N LWHSD+ G R P R
Sbjct: 318 SFQLRAATVEFSAFAQGDDEESFSNFPVALRHSVHLGPMFNVSDPPHLVKKIANTLWHSDLTGAIRDDGTYHRADPAR 395
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 3.910e-8 Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1
Query: 1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAAE 114
LSTDYIQRML MRFL +AH DK FDVVATVCDGA+E
Sbjct: 236 LSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASE 273
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5KYD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD6_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 9.740e-8 Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query: 196 FNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDI 303
F + FRHP H VFNMS+P+H+LKK+VNALWHS +
Sbjct: 6 FKVAFRHPQHGRPVFNMSEPVHLLKKVVNALWHSGL 41 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig890.5.1 >prot_P-littoralis_Contig890.5.1 ID=prot_P-littoralis_Contig890.5.1|Name=mRNA_P-littoralis_Contig890.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp MLVMVMRFLMVAHPDKAFDVVATVCDGAAEHCSFQTHAAILGFVHWIKGPback to top mRNA from alignment at P-littoralis_Contig890:2159..2912- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig890.5.1 ID=mRNA_P-littoralis_Contig890.5.1|Name=mRNA_P-littoralis_Contig890.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=754bp|location=Sequence derived from alignment at P-littoralis_Contig890:2159..2912- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig890:2159..2912- >mRNA_P-littoralis_Contig890.5.1 ID=mRNA_P-littoralis_Contig890.5.1|Name=mRNA_P-littoralis_Contig890.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig890:2159..2912- (Pylaiella littoralis U1_48)back to top |