mRNA_P-littoralis_Contig1208.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1208.3.1
Unique NamemRNA_P-littoralis_Contig1208.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1208.3.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.310e-14
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:   37 EDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCM 225
            E RH+ KKA  G + WP+ GI    M  + GI+LA+GLV+LPA+ DHW    FHD++L+R+C+
Sbjct:  736 EQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACL 798
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1208.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFU5_9PHAE6.310e-1449.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1208contigP-littoralis_Contig1208:2820..3047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size228
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.5436072-CDS-P-littoralis_Contig1208:2819..30471680789517.5436072-CDS-P-littoralis_Contig1208:2819..3047Pylaiella littoralis U1_48CDSP-littoralis_Contig1208 2820..3047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1208.3.1prot_P-littoralis_Contig1208.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1208 2820..3047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1208.3.1

>prot_P-littoralis_Contig1208.3.1 ID=prot_P-littoralis_Contig1208.3.1|Name=mRNA_P-littoralis_Contig1208.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
TTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGL
VKLPAMEDHWDVSKFHDFELLRSCMI
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mRNA from alignment at P-littoralis_Contig1208:2820..3047+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1208.3.1 ID=mRNA_P-littoralis_Contig1208.3.1|Name=mRNA_P-littoralis_Contig1208.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig1208:2820..3047+ (Pylaiella littoralis U1_48)
ACGACAACCCCGATCGACGAGGCAGACGACAAACGCGAAGATAGGCACAA
GGCGAAGAAGGCAAACAACGGCAACGCCCGGTGGCCTGAAGGCGGTATCA
ATATGAGCACCATGTACAGCCTCTTTGGGATCGTCCTCGCGCTTGGCCTT
GTCAAGCTCCCAGCGATGGAAGACCACTGGGACGTCAGCAAGTTCCACGA
CTTCGAGTTGCTCCGATCGTGCATGATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1208:2820..3047+

>mRNA_P-littoralis_Contig1208.3.1 ID=mRNA_P-littoralis_Contig1208.3.1|Name=mRNA_P-littoralis_Contig1208.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig1208:2820..3047+ (Pylaiella littoralis U1_48)
ACGACAACCCCGATCGACGAGGCAGACGACAAACGCGAAGATAGGCACAA
GGCGAAGAAGGCAAACAACGGCAACGCCCGGTGGCCTGAAGGCGGTATCA
ATATGAGCACCATGTACAGCCTCTTTGGGATCGTCCTCGCGCTTGGCCTT
GTCAAGCTCCCAGCGATGGAAGACCACTGGGACGTCAGCAAGTTCCACGA
CTTCGAGTTGCTCCGATCGTGCATGATT
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