mRNA_P-littoralis_Contig89.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig89.19.1
Unique NamemRNA_P-littoralis_Contig89.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig89.19.1 vs. uniprot
Match: D8LHE6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE6_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.480e-26
Identity = 71/127 (55.91%), Postives = 91/127 (71.65%), Query Frame = 1 
Query:    1 GGGGNVEFELQKDNAS-SSSSITGET--GTSKGGVAADGEAWNECPSLPSSKVTNQSFEDCLRAGEGKLREEIKRLHKELQQKTGEDMKRTKGAGALAAQARTIMTQDKTRTAAAALSTKGRASAVQ 372
            G GG+V FE+ ++++S S+S++T +T  G  +GGV       ++  SL SSK +N+SFEDCLRAGEGKLR+EI RLHKE+QQ +G D K  KG G LAAQ R +M  DKTR A A +STK RASAVQ
Sbjct:  390 GNGGSVTFEMNREDSSCSNSNLTIDTAGGNREGGVLPSWPGGDDQTSLCSSKFSNRSFEDCLRAGEGKLRDEIHRLHKEIQQISGNDAKDMKGGGVLAAQTRQMMINDKTRAAVALMSTKSRASAVQ 516
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig89.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHE6_ECTSI4.480e-2655.91Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig89contigP-littoralis_Contig89:151183..155487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHE6
Model size374
Max annot lvl2880.D8LHE6|-
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.34e-27
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size372
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791776.9450946-CDS-P-littoralis_Contig89:151182..1513111680791776.9450946-CDS-P-littoralis_Contig89:151182..151311Pylaiella littoralis U1_48CDSP-littoralis_Contig89 151183..151311 -
1680791776.962978-CDS-P-littoralis_Contig89:153594..1537611680791776.962978-CDS-P-littoralis_Contig89:153594..153761Pylaiella littoralis U1_48CDSP-littoralis_Contig89 153595..153761 -
1680791776.975972-CDS-P-littoralis_Contig89:155411..1554871680791776.975972-CDS-P-littoralis_Contig89:155411..155487Pylaiella littoralis U1_48CDSP-littoralis_Contig89 155412..155487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig89.19.1prot_P-littoralis_Contig89.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig89 151183..155487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig89.19.1

>prot_P-littoralis_Contig89.19.1 ID=prot_P-littoralis_Contig89.19.1|Name=mRNA_P-littoralis_Contig89.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
GGGGNVEFELQKDNASSSSSITGETGTSKGGVAADGEAWNECPSLPSSKV
TNQSFEDCLRAGEGKLREEIKRLHKELQQKTGEDMKRTKGAGALAAQART
IMTQDKTRTAAAALSTKGRASAVQ
back to top

mRNA from alignment at P-littoralis_Contig89:151183..155487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig89.19.1 ID=mRNA_P-littoralis_Contig89.19.1|Name=mRNA_P-littoralis_Contig89.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4305bp|location=Sequence derived from alignment at P-littoralis_Contig89:151183..155487- (Pylaiella littoralis U1_48)
GGCGGCGGCGGCAACGTCGAGTTTGAGCTCCAAAAAGACAACGCAAGCAG
CAGCAGCAGCATCACAGGGGAGACAGGTGCACTTGGTGAAGCTCGTCGTC
GACACTTCACATCAGCGGCGCACGCATGTGTATAATCTTGCGGTGTTGGT
GCATGACTGCTTGTTTTGCCTGTTATTGATATGCACAAAAATATTCCGCA
ACCCTGAACGTTTTGGCGCCATCCTCCTCACCTCGCGCGAAGTATTGCGA
ACGGTAAAATTTGGGGTCCGACATATGGTACAAGATCCGGCACGGATCGA
TGCCCAATTCCCGGGCCCCCCTATTTCTGGGGGAATGACCGCCACTTAGA
TCACATCGCAGAACGCGAGGAGTAAAAGAGCTACGCGCCCTATTTAGGTT
CACATTAACCTTTATTGTCCTGTTAAATTCGAAGCATTTTTGTGCAGGTC
TTGGACTGCAGGCTACATTTTCGCCTACATAATAAACTCACTTTGTGTGA
GAAACAACGAGCACACCAGTAGCATATCCGCTTTACCCTCCCTCATACCG
AAACGATTAATTCACACAATAATAATCAAATTTTGATGATCTTTTCTTTT
CTCGAACATCATGGCGCGATCTCCTCCTCATCTCCCGTGTGATGAACACA
GCCACTGCTGCAGGTAGTTTGTTTTGGTATTTTCAGTGTGTGAATACTGA
TTTACACTCACAGCATAGCTGCTCCGGCACGTGACTACCTACTGCTGTGT
GTGGTGTGTGTGTTGAGGGCTTACCTACAGGAAATCTTCCGATGCCGGGT
CAGTACCTCTTCATATCGGCACTGACACCTCGTCGGATGGGGGGACGGTT
ACCAAACTCAGTGGTCACAGGGTAACTTCCTGCGAGAGGATGAGGAGTGC
AAACAAACATGGGGTCCCGACAAATGGTACAAGATCCGGCACGGGTCGAG
GCTCAACTCCCGGCCCCCTCTACATTTTGCTGGGGGGATGACTGCCCCCC
GAGATTATTGCTGTCTTCTCCTGTCCTGGCTGTTGTGTTTCGGTGGGATG
GAATGGACAAAGAAAACTATTGAAGTTTGGGTAGTCCGCTTGCCGGGACG
AGAGACCTCATCCAAAATCCAGTACGAAGTACTTATTGTTATTGATTTCG
AGTAGCGAAAATAACACTACAGGGGAGTGATTGGTCTACTAAGTCGGTTT
GATACACCAACAGTATGATACTCTGGAGAATGTAGAAAAACCTCCCATAC
ACCAAGTACCTTGAGAAGAGCCAAAAGTTGTTCACAGTACATACAGTATA
ACTTGCTATGCCACTTCAGTTATATGCTGTACACGAAGGTACCAAATGTT
GGAAAAAATAAATACGAAACTACGGGAAAACCCTCCTCGTCCTATGAATT
CCTCGAGAGAAAACTACTTCTTCGGGTACAGCGTACACGTACATGTACAC
GTACACGTCTTATTTTTTGGGGGGGTTTTCTTCCGAGCCTGTTCTTTCGT
TTTCTTTTCATGTATTTTGAACTTCGGCCGCCACAGATGGTACCCCAACG
GTACCCTATCTGATTTGATTGGGTGACGATCGTCTATTTTTTTTATTTCT
TTTATTTTTTTAATTTTCCTCCTAGCACGATGTGTGCCTGGTTTGTGACC
ACAGGCTATATATGGACTGCGATGTTGGTGAGCTCATGTGAGAACCATGA
ACACGAACAACATATTCGGTACCCAGGAACGAGTAAAGGAGGCGTCGCCG
CGGACGGTGAGGCGTGGAACGAGTGCCCGAGCCTGCCCTCTTCGAAGGTG
ACCAACCAGTCTTTCGAGGACTGTCTGAGGGCGGGAGAGGGGAAGCTGAG
GGAAGAGATCAAACGCCTCCACAAGGAGCTCCAGCAGAAAACGGTAAGCA
TCGCATCGTGTGAGCAACACGTAATATCACACGGAGGTTCTAATTCTGCA
CACCTTCTTTATGGTGTCGCGTTGTGTGATCTGTCAGGGTCCGTGAAAGT
GATGTTGGGTGACGTCTACTCGTACTAGATATTTGGGTAGCCTGGGCCCA
CAGAGAGCGTCCTACCTGCCGGAAAATTTAGCAGCATGGGCGCAATGAAG
GTACTGACGAAGAGATTCGATTGGTCTTCAACGAGAAGACATCACGCGCA
CACACAAAAAGCCTCTACTTTTAATCTTTTGACGTCAAGACAACGCAAAC
AGAAACAAAATTGGTCTAAGAAGACACCAAAAGTGGCACCGAAATCAGGG
AAAGACATGAACGCCTCCTCCACGTGGAGCTCCGGGAGACAACGGACGGC
CAGTGAGTGTGGAATATTCCGGAGCACAAGCAAGCACAACATGAACGAAC
AACAAATCGCCTGCTCCGTCGAGAAAGTTGGTATGAAGAACATGAGGAGC
AGGACGTAAGACGCGTGCATACCGTAGAAGTAAAGTGATTTTGGAAGTTT
GGCATCATGCCAGCACGTATGCATGCATGCCGTCGTCGAGGCAAGAGATA
ACGCCTCCCCCGCCGCGAAGAGTTTCAGGATACATTACCACCGTAGGTCG
CATAAGACACCACACCCCGTGGACCGATTTTCAAAGCACAATTACTCCAC
AGCGGAAAGAGTGTGGGTGCCAGAAAGGGCGGCGTTGGAACCATCTCGTC
GAGAGCTTTGAAAAACGTTTCGTTTGATGCTGGCACCCTCGTCGGTGTGG
AGTAATTGAGGATTGAAAATCGGTCCAGGGGGTGTGTTATCTTATACGAC
CTACGGTATGCCGTAGCTCCCCGAAAGCCGTGTCCCGTGACTCCCCTGGT
CATGGAATGATCGGCTAACCGTACCCGTGTTTTGTTTCTCACCATTTTAG
TGTCGCGAAAAGCACAATTCAAATCACTCCGGAGTAAAGCTAAAACAATT
TTATACATGTCGCTCTGACATGCCATCGCTGATGTCGAAATTTGTTTGCT
TGTTCGTTTACATGCACATCGCATAAATGTCGGCAAAACAGTATGAAACA
AACGTTGAGCCCCCTACAAATAGAAATCGAGGTTCAACATGTTGGAATTC
AACAACAGACTATCGCCGTCCGGACCTATCCCACGATAGAGGGGGCCACG
TTTCGGTTGCAGCGCCTCCAAGCCACTCACTCGGCCGGTAAGCTACCGAC
GAATATTCATGCCTGTGTCATTCTAAAAGCCTTGAAAAGATTGGCTGCTC
TCGGCAGGGATCGCGATGCTCTTTTTTCTGGCGGTGTGAAATATGAAGTA
ACAAGTTTTCAATTTATGGCCAATGTTTTGACTGGAAAACACAGACATCC
GAAGCGTGGCTAAGCACGCTGTGCGCGTGAAGTCCAGGGTGTGATGGTAC
TCCCCCTATCGTGGGATGCATGGTGCTCGCGGCCAGTAGAAGACGTCGTG
ACACATGACGTAAACCACGAAACATCGCGCCACAAAATTGATTTCTTAGG
ATAGCATCGTGTGTGGTGTTTTGTTGTCGTATTATATGCTCAACTCTAAG
ACGAGTGCTACTCACGGCATCATCCACGTAAAAAAATATATACTTAGTAT
AGCATAAATTGCCGGTTCCGATCATCACTCTTCTTCTCCCAGCAACGAGC
ACCGTTTCGACGCGAGTTCCATTTCTCGGAAATTTATTTCCTCGGTCACG
GGTAAACACCATGAAATACACGTGCTGGCGGCCCCGGCCAAGGCAGTCAC
GACCAAGGATGATTGATCGTCACTGAGTCTCTCAACAGTAGGGCTTTTCC
AAGCAAGCATATCCCTACCTTTTGGGGGGCCGGTAGACTACGGCGTTCTC
CTATCGGATGAATCAGCGGTACCGACACTAAAAGGTACAATATACAGGTA
CCCATTTCTGGGGTAGGTAGCATTTGACCAACCATAGAAAGCGTTCTCCT
ATCGGATGAGTCAGCGGTAGGGACACTAAAAGGTCCCATGTAAGGTAGGT
AGCCTGTGACCACGGAAAACGTACCCAATCGGGTGAGTCAGCATTACGGA
CATTGGAAGGTACTGAGCAGATATCGGAAAGGTTTTGAGTACAAAGACGA
CACACACAAATCAAAAGCGTCTCTGACACACACGCATGTGCATGATATGT
ATATTATGTGTGTCTATGAATTCCTCATATTAATATATGTTTCGGTATTG
TGGGTGTCTCTCCCTCGACCAATTAGGGGGAAGACATGAAACGCACAAAG
GGCGCCGGGGCTTTGGCAGCCCAGGCTAGGACGATCATGACCCAAGACAA
AACCAGGACCGCGGCTGCTGCTCTTTCCACCAAGGGGCGGGCTTCGGCCG
TGCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig89:151183..155487-

>mRNA_P-littoralis_Contig89.19.1 ID=mRNA_P-littoralis_Contig89.19.1|Name=mRNA_P-littoralis_Contig89.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig89:151183..155487- (Pylaiella littoralis U1_48)
GGCGGCGGCGGCAACGTCGAGTTTGAGCTCCAAAAAGACAACGCAAGCAG
CAGCAGCAGCATCACAGGGGAGACAGGAACGAGTAAAGGAGGCGTCGCCG
CGGACGGTGAGGCGTGGAACGAGTGCCCGAGCCTGCCCTCTTCGAAGGTG
ACCAACCAGTCTTTCGAGGACTGTCTGAGGGCGGGAGAGGGGAAGCTGAG
GGAAGAGATCAAACGCCTCCACAAGGAGCTCCAGCAGAAAACGGGGGAAG
ACATGAAACGCACAAAGGGCGCCGGGGCTTTGGCAGCCCAGGCTAGGACG
ATCATGACCCAAGACAAAACCAGGACCGCGGCTGCTGCTCTTTCCACCAA
GGGGCGGGCTTCGGCCGTGCAG
back to top