mRNA_P-littoralis_Contig89.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig89.18.1
Unique NamemRNA_P-littoralis_Contig89.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig89.18.1 vs. uniprot
Match: D8LHE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE5_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 1.800e-101
Identity = 153/175 (87.43%), Postives = 163/175 (93.14%), Query Frame = 1 
Query:    1 VDANNLYEFLSHNVEHSARRDIVNILTHERFKFNWENPTGHYRLEMDKKSHREIMMLLSMVHAREILQGKREGRGDTSQAQNWSNFRNARVDKEPVELTETSAINLPVSGVLEFDYVSTAKAPPDSIPATDAQVQAMQESLRLLPKQNFGEKPNYMLAVLQLQQAAARYYFTTPQ 525
            VDANNLYEFLSHNVEHSARRD+VNILTHERFKFNW+NPTGHYRLEM KKSHREIMMLLSMVH+REILQGK+EGRGDTSQ QNWSNFRNAR+DKEPVEL ETS  NLPVSGVLEFDYVSTAK PPD   ATD+QVQA+QESL LLP++ FGEK NYMLAVLQLQQAAARYYF+TPQ
Sbjct:  184 VDANNLYEFLSHNVEHSARRDVVNILTHERFKFNWDNPTGHYRLEMQKKSHREIMMLLSMVHSREILQGKKEGRGDTSQGQNWSNFRNARMDKEPVELVETSVANLPVSGVLEFDYVSTAKVPPDCAHATDSQVQALQESLHLLPRRTFGEKTNYMLAVLQLQQAAARYYFSTPQ 358
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BLAST of mRNA_P-littoralis_Contig89.18.1 vs. uniprot
Match: A0A836CM61_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM61_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.410e-36
Identity = 76/175 (43.43%), Postives = 110/175 (62.86%), Query Frame = 1 
Query:    1 VDANNLYEFLSHNVEHSARRDIVNILTHERFKFNWENPTGHYRLEMDKKSHREIMMLLSMVHAREILQGKREGRGDTSQAQNWSNFRNARVDKEPVELTETSAINLPVSGVLEFDYVSTAKAPPDSIPATDAQVQAMQESLRLLPKQNFGEKPNYMLAVLQLQQAAARYYFTTPQ 525
            VD  N ++F+   VE + RRD+ N++THE FKFNW+NPTGHYRL++  K HR I+  +  +   E+ +G      DTSQ +N SNFRNA +D E + LTE  A +L   GVL+FDYVSTA+   +  P ++ + + ++  + L  ++    +P Y L +LQLQ AAA + FTT Q
Sbjct:  622 VDPENKFDFMCACVEPARRRDLANLITHEVFKFNWKNPTGHYRLQLSNKYHRAILNTVVAIQVLEMGKGAPPDAPDTSQHRNRSNFRNATLDGEQLALTEAVARSLGARGVLDFDYVSTARPGLEEQPLSEEEFETLKARIGLRQRRRSEPRPPYFLLLLQLQLAAAAHLFTTTQ 796
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BLAST of mRNA_P-littoralis_Contig89.18.1 vs. uniprot
Match: A0A7S3HHB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHB4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.180e-24
Identity = 68/182 (37.36%), Postives = 102/182 (56.04%), Query Frame = 1 
Query:    1 VDANNLYEFLSHNVEHSARRDIVNILTHERFKFNWENPTGHYRLEMDKKSHREIMMLLSMVHAREILQGKR-EGRGDTSQAQNWSNFRNAR--VDKEPVELT--ETSAINLPVSGVLEFDYVSTAK---APPDSIPA-TDAQVQAMQESLRLLPKQNFGEKPNYMLAVLQLQQAAARYYFTT 519
            +D  N+++F+  N     R+D+V  LT +R+KFNW NPT  + L +++K+ R IMM +  ++  E    K   GRGDTSQ  NW NFRNAR  ++KE  E+        NLP +G +EFDYVST +    P + +   T+ ++    E L L P++      + M  ++ LQ A+  YYF T
Sbjct:  147 LDTENMFDFMYRNTSAEQRKDLVYALTLKRYKFNWSNPTAAWNLNLEEKTQRSIMMQIIAINNFESEFSKNASGRGDTSQQGNWFNFRNARYTINKETREILIDRDFVKNLPSTGSIEFDYVSTTRPALGPDNPVKLITEDELYVFMERLGLSPRKKVTNAKS-MFLLMDLQLASTSYYFKT 327
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BLAST of mRNA_P-littoralis_Contig89.18.1 vs. uniprot
Match: A0A7S3XXN7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXN7_HETAK)

HSP 1 Score: 100 bits (250), Expect = 1.100e-21
Identity = 60/143 (41.96%), Postives = 80/143 (55.94%), Query Frame = 1 
Query:    1 VDANNLYEFLSHNVE-------HSARRDIVNILTHERFKFNWENPTGHYRLEMDKKSHREIMMLLSMVHAREILQGKREGRGDTSQAQNWSNFRNARVDKEPV----ELTETSAINLPVSGVLEFDYVSTAKAPPDSIPATDA 396
            VD  NL  FL   +E       H  +R I   ++ ERF F   NP+GHYRL +  + HRE + LL  ++ RE    +  GRGDTSQ  NW+NFRN   D  PV    E   +SA     + VLEFDYVST++ P D++P +D+
Sbjct:   47 VDVENLMPFLDGVLESGVDGTRHEQKRRIAQNVSFERFGFTPGNPSGHYRLVLRNRPHRECLQLLLDINHREAQASQASGRGDTSQKGNWANFRNEACDGRPVTLDMEFLTSSAFR--EARVLEFDYVSTSRPPADAVPLSDS 187
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BLAST of mRNA_P-littoralis_Contig89.18.1 vs. uniprot
Match: A0A5D6Y3H0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3H0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.200e-9
Identity = 35/123 (28.46%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:    1 VDANNLYEFLSHNVEHSARRDIVNILTHERFKFNWENPTGHYRLEMDKKSHREIMMLLSMVHAREILQGKR--EGRGDTSQAQNWSNFRNARVDKEPVELTETSAINLPVSGVLEFDYVSTAK 363
            V+ + ++ F+  ++  + +R +V+       +F   NPTG + L++     R++ +  +M++A E     +    R D SQ    +N+RN   +++ + LT      LP SG+LEFDYVST +
Sbjct:  991 VEGDRVFAFMQTHLTPAEQRRLVDAFGASVIQFTTANPTGRWTLDLSDTRQRKVALWFAMINASEAAYSAQFHAKRTDNSQYGKGNNWRNVSFNRKAIRLTNEFFQQLPQSGILEFDYVSTVR 1113
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BLAST of mRNA_P-littoralis_Contig89.18.1 vs. uniprot
Match: A0A7S4W8D4_9DINO (Calmodulin n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4W8D4_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 5.660e-7
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 1 
Query:   61 DIVNILTHER--FKFNWENPTGHYRLEMDKKSHREIMMLLSMVHAREI-LQGKREGRGDTSQAQNWSNFRNARVDKEPV--ELTETSAINLPVSGVLEFDYVSTAKAPPDSIP 384
            D + +L H      FN ENPTG YRL++   +   +   L ++   E  +  ++E + DTSQ  N S+FRNAR  +      L E     LP  G+LE DY+S  + PPD+ P
Sbjct:  389 DCMRVLQHAHRYLNFNAENPTGRYRLDLANPADSSVAARLQLLDRWEAGVALRQEQKIDTSQRGNRSHFRNARYQQRSFAGSLAEWP---LPEHGLLELDYLSDQRPPPDARP 498
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BLAST of mRNA_P-littoralis_Contig89.18.1 vs. uniprot
Match: A0A7S3DBG2_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DBG2_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 6.230e-6
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:   91 FKFNWENPTGHYRLEMDKKSHREIMMLLSMVHAREILQGKREG----------RGDTSQAQNWSNFRNARVDKEPVELTETSAINLPVSGVLEFDYVS 354
            + F  ENPT HYRL+++ +  +++M  L  +  +E   G              +GD SQ  N  N RN R+D+  V  + +    LP SG+LEFDYV+
Sbjct:  171 YAFQPENPTNHYRLDLNTRRAKQMMAKLVRLSLQESAAGVLPTPSICPCLMCEKGDPSQKGNGENVRNERIDR--VAFSYSKGAPLPESGILEFDYVA 266
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BLAST of mRNA_P-littoralis_Contig89.18.1 vs. uniprot
Match: F0YFV2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFV2_AURAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.260e-5
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = 1 
Query:  109 NPTGHYRLEMDKKSHREIMMLLSMVHAREILQGKREGRGDTSQAQNWSNFRNARVDKEPVELTE---TSAINLPVSGVLEFDYVSTAKAPPDSIP 384
            NPTGHY L+  +   R     L+ +       G +  R DTSQ  N+ NFRN R++ EP++LT    T        G L FD+VST + P  + P
Sbjct:  953 NPTGHYCLDFRRALDRLAATKLAGLANAHKAAGVKAKRADTSQHANFFNFRNERLNGEPLKLTPGWFTHLDGKDKEGTLRFDFVSTERPPSTAAP 1047
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig89.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LHE5_ECTSI1.800e-10187.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM61_9STRA2.410e-3643.43Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A7S3HHB4_9STRA1.180e-2437.36Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3XXN7_HETAK1.100e-2141.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6Y3H0_9STRA8.200e-928.46Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S4W8D4_9DINO5.660e-736.28Calmodulin n=1 Tax=Alexandrium monilatum TaxID=311... [more]
A0A7S3DBG2_9EUKA6.230e-634.69Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
F0YFV2_AURAN1.260e-536.84Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig89contigP-littoralis_Contig89:126424..128938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPR4
PFAMsDUF4476,EF-hand_5,LRR_6
Model size527
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.73e-15
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size525
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791776.8783731-CDS-P-littoralis_Contig89:126425..1265511680791776.8783731-CDS-P-littoralis_Contig89:126425..126551Pylaiella littoralis U1_48CDSP-littoralis_Contig89 126426..126551 -
1680791776.8901575-CDS-P-littoralis_Contig89:127083..1272031680791776.8901575-CDS-P-littoralis_Contig89:127083..127203Pylaiella littoralis U1_48CDSP-littoralis_Contig89 127084..127203 -
1680791776.9004111-CDS-P-littoralis_Contig89:127883..1280151680791776.9004111-CDS-P-littoralis_Contig89:127883..128015Pylaiella littoralis U1_48CDSP-littoralis_Contig89 127884..128015 -
1680791776.913416-CDS-P-littoralis_Contig89:128791..1289381680791776.913416-CDS-P-littoralis_Contig89:128791..128938Pylaiella littoralis U1_48CDSP-littoralis_Contig89 128792..128938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig89.18.1prot_P-littoralis_Contig89.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig89 126426..128938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig89.18.1

>prot_P-littoralis_Contig89.18.1 ID=prot_P-littoralis_Contig89.18.1|Name=mRNA_P-littoralis_Contig89.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
VDANNLYEFLSHNVEHSARRDIVNILTHERFKFNWENPTGHYRLEMDKKS
HREIMMLLSMVHAREILQGKREGRGDTSQAQNWSNFRNARVDKEPVELTE
TSAINLPVSGVLEFDYVSTAKAPPDSIPATDAQVQAMQESLRLLPKQNFG
EKPNYMLAVLQLQQAAARYYFTTPQ
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mRNA from alignment at P-littoralis_Contig89:126424..128938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig89.18.1 ID=mRNA_P-littoralis_Contig89.18.1|Name=mRNA_P-littoralis_Contig89.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2515bp|location=Sequence derived from alignment at P-littoralis_Contig89:126424..128938- (Pylaiella littoralis U1_48)
GTCGACGCCAATAACCTGTACGAGTTCCTGTCGCACAACGTGGAGCACTC
CGCGCGGAGGGACATCGTGAACATTCTCACGCACGAGAGGTTCAAGTTTA
ACTGGGAGAACCCTACGGGGCACTACCGCCTCGAAATGGACAAAAAGGTG
CGTGCGTTGGACGTATTGTTGTCATCGATGTCCTTTTTCGAAACTTCAAA
AAGGTTCTGCTGCAGGGTAGATGGCTTCCCTTGCTTCGACGCCTACAGTT
ACAAACGGTGTGCTTTTTCCCTTGCAGGCCTGGGCAATCAATGCTGTCTG
TGGTGCGAACGTGCCTATGAGTCCAAAAGAAAGCACCCGACAGAAAAATG
AAACGTACGGGAGTGAGAAAGAGATAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAAGAAGAGATAGAAAAAGA
TTACCGATATTTAAGAACTCAACGCTTATGTGCCACCATTATACGTCGCC
ACGACATTGCTGCACGTACACGTAGTCAAAGAAGCTCCCTGTCAAGTTGA
ACGACTCTTTGAGAATCAAACCGACAACGCCTGTATGTTGTTGTTGTTAC
TGTTGCTGTTGTTGTTGTTGTCATCAAGTATCACAACCCGATGATTGGAA
TATGAAATGGTTCTTTAGTTTTGGAGTCTCGTTTTGACGAGGCGAGGCGC
CCCGCTTTCCTCCATCGAGAGTTGCACCGAGGGAGCACGCGGGCACTGGG
CATGGCAATACCGAATCTTACACGCCGCCCCCCACCTGAATATTAAGCAT
GGTGTTTCGCCGCAAAGTGGTGACGCTACTACTGTCCATCCTGTAGCTTG
CCCTCTAACCCAAACCACCGCCATCACGACCGCGGCCGCCGCCGGCCCAA
CTTAAATCCCTATCGCATCGAAGTCCCATCGGGAGATCATGATGCTGCTG
TCCATGGTGCACGCCCGGGAGATCCTGCAGGGGAAGAGAGAGGGAAGGGG
TGACACGTCGCAGGCGCAGAACTGGTCCAACTTCAGAAACGCGAGAGTCG
ACAAGGCAAGCAAGTCGCCGTCCAACAACATGCATGTACTGTTGCACGAT
ATGTACCAGCGTAACCATCTATCTTGAGAACGGGAATATCGGACAGTTAC
GGTTCGGATGACCCATGGACGTACGACCTCGGGGAGGGTTCAAGCTAAGA
GCTGGAACGATTTGAAAGTCAAGCTAATTTTGTTTTTTCCTGAGCTTGAA
TATGAGCTCCGTCGATGGATCATCTGAGACCTTCAATCGTGAATCATTAT
AGATGCCATTTTGCGGGTATTCCTGCAGGTTCTTGTGGACAAATTGCCGT
CGTCTTCTCTCGCCCCCTCTCATGACGCAGCCAGTCGCCACCGTGCGTAG
ACACAGCTGTTTGTCGTGACTTGACGACCGATAGAAAGGCCCGCATGCTC
TTTATTATTCATCGCGCTGTAGAAGAAACTCAACTCGCCTTCAAACCCTC
TGGAGAGTTTATTGTTTGACGACGAGACTATCACAGGTGAAACCAACCAG
TCATTCAATTACACCGACAGCAACACCAGCAACTCACCCAAAACCACACC
ACCAACACCGACACAACTACCAGCACCAGCACCAACACCAACACCAACAC
CATCACTAACACCAATAGCACCAACAGCACAAGCAACACGTCACTGTAAT
CAACACCAATACCGATAATAAATTAACAAACTCAGGAGCCGGTGGAATTG
ACAGAAACGTCCGCGATAAACCTCCCCGTATCCGGGGTGCTGGAGTTCGA
CTACGTCTCCACGGCGAAGGCCCCTCCCGATTCCATCCCCGCTACCGACG
CACAGGTAAATTGTATATTACGGAACTCCTTTATCGCCGTTATTCTAACC
GTTGTTGTTGTTGTGGTTGTTGTTGTAGTCTTAGGGTTACATCATTGTAG
CCCATTTGATCAAGTACCACCTCCGTGCTACGTGCCCGTTTCCTGCCACC
CTCTAGCACGAAAACCTTTGCGCAATATTTTTCGATTTCTCGTACACAAG
AGCAAGCGCGATGAGCGGTTCTGCCACCTCCTCGCATTACTTTTGCCGCC
CGCGAATTGGAGCCGCACCGCACGGCAGCCGTAGATACTCAGGAAGATAC
GTACCTGTATCTTGTCCGAGGCTGGCTTGCTGTAGCTACTTGGTAAATCG
TGTGTGCCTTCACTACAACCATCTCTTCAGTTAAGACGTAAATATAACTC
CTTGTCGGATCCCTTGAACCTCTCCGTTTGTAAGTCGGAATCGTATTCCA
GCGGCAATGCTTTGCTGGGCGTTGTGTCGGCTCTTCATTTTTCCTGCCCT
CGACGTGCGCGTTTTGCTCCCTTTCGTCTGCTCACAGGTGCAGGCCATGC
AGGAGTCCCTCCGTCTCTTACCGAAGCAAAACTTCGGCGAAAAGCCTAAC
TACATGCTGGCGGTGCTGCAGCTCCAACAGGCGGCCGCGCGCTACTATTT
TACGACGCCCCAGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig89:126424..128938-

>mRNA_P-littoralis_Contig89.18.1 ID=mRNA_P-littoralis_Contig89.18.1|Name=mRNA_P-littoralis_Contig89.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig89:126424..128938- (Pylaiella littoralis U1_48)
GTCGACGCCAATAACCTGTACGAGTTCCTGTCGCACAACGTGGAGCACTC
CGCGCGGAGGGACATCGTGAACATTCTCACGCACGAGAGGTTCAAGTTTA
ACTGGGAGAACCCTACGGGGCACTACCGCCTCGAAATGGACAAAAAGTCC
CATCGGGAGATCATGATGCTGCTGTCCATGGTGCACGCCCGGGAGATCCT
GCAGGGGAAGAGAGAGGGAAGGGGTGACACGTCGCAGGCGCAGAACTGGT
CCAACTTCAGAAACGCGAGAGTCGACAAGGAGCCGGTGGAATTGACAGAA
ACGTCCGCGATAAACCTCCCCGTATCCGGGGTGCTGGAGTTCGACTACGT
CTCCACGGCGAAGGCCCCTCCCGATTCCATCCCCGCTACCGACGCACAGG
TGCAGGCCATGCAGGAGTCCCTCCGTCTCTTACCGAAGCAAAACTTCGGC
GAAAAGCCTAACTACATGCTGGCGGTGCTGCAGCTCCAACAGGCGGCCGC
GCGCTACTATTTTACGACGCCCCAG
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