mRNA_P-littoralis_Contig89.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig89.17.1
Unique NamemRNA_P-littoralis_Contig89.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig89.17.1 vs. uniprot
Match: D8LHE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE5_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 6.440e-61
Identity = 100/124 (80.65%), Postives = 111/124 (89.52%), Query Frame = 2 
Query:    2 EDHTSDLQIIDLYAGLGRLVDEKRPMLVRLWYCDIGIRGNVPNWTVREKLLDKFLVGGKPVPDRVLDIVRMYKRMADAGFLAKEPGMGAADIAKTYERFLKHLPELRR-PQSSSHNRGGRRSVS 370
            EDHTSDLQIIDLYAGLGRL DE RP++VRLWYCDIGI+GNVPNW VREKLLDKFLVGGKPVPDRVL+I RMYKRMADAG+LAKEPG+G+ADIAK +ERFLKHL E +R P ++   RG RRSVS
Sbjct:  439 EDHTSDLQIIDLYAGLGRLADESRPLVVRLWYCDIGIKGNVPNWAVREKLLDKFLVGGKPVPDRVLEIGRMYKRMADAGYLAKEPGLGSADIAKAHERFLKHLQEAKRTPAAAQAGRGTRRSVS 562
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig89.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHE5_ECTSI6.440e-6180.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig89contigP-littoralis_Contig89:120819..124871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size528
Hectar predicted targeting categoryother localisation
Exons4
Cds size411
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig89.17.1prot_P-littoralis_Contig89.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig89 120860..123779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791776.7861063-UTR-P-littoralis_Contig89:120818..1208591680791776.7861063-UTR-P-littoralis_Contig89:120818..120859Pylaiella littoralis U1_48UTRP-littoralis_Contig89 120819..120859 -
1680791776.8335652-UTR-P-littoralis_Contig89:123779..1237941680791776.8335652-UTR-P-littoralis_Contig89:123779..123794Pylaiella littoralis U1_48UTRP-littoralis_Contig89 123780..123794 -
1680791776.845089-UTR-P-littoralis_Contig89:124810..1248711680791776.845089-UTR-P-littoralis_Contig89:124810..124871Pylaiella littoralis U1_48UTRP-littoralis_Contig89 124811..124871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791776.7989602-CDS-P-littoralis_Contig89:120859..1210521680791776.7989602-CDS-P-littoralis_Contig89:120859..121052Pylaiella littoralis U1_48CDSP-littoralis_Contig89 120860..121052 -
1680791776.8090923-CDS-P-littoralis_Contig89:122363..1224551680791776.8090923-CDS-P-littoralis_Contig89:122363..122455Pylaiella littoralis U1_48CDSP-littoralis_Contig89 122364..122455 -
1680791776.8215857-CDS-P-littoralis_Contig89:123653..1237791680791776.8215857-CDS-P-littoralis_Contig89:123653..123779Pylaiella littoralis U1_48CDSP-littoralis_Contig89 123654..123779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig89.17.1

>prot_P-littoralis_Contig89.17.1 ID=prot_P-littoralis_Contig89.17.1|Name=mRNA_P-littoralis_Contig89.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MLVRLWYCDIGIRGNVPNWTVREKLLDKFLVGGKPVPDRVLDIVRMYKRM
ADAGFLAKEPGMGAADIAKTYERFLKHLPELRRPQSSSHNRGGRRSVSQA
RTQQARADSRTVTGQTAATVVAAASAPAAAVATGGT*
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mRNA from alignment at P-littoralis_Contig89:120819..124871-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig89.17.1 ID=mRNA_P-littoralis_Contig89.17.1|Name=mRNA_P-littoralis_Contig89.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4053bp|location=Sequence derived from alignment at P-littoralis_Contig89:120819..124871- (Pylaiella littoralis U1_48)
GGAGGACCATACCTCGGACCTTCAGATCATTGACCTCTACGCGGGCCTCG
GCAGACTGGTGGTGAGTAACACAACCAACCATGGACAACATAACGACTAT
GAAAGAGAACCGCCGTGTATCCGGAATCACTGGGGGGGGGGCACACACAC
CTGAAGAAGACAACGAAGATCGAGAGCAAGCGGCACGCAAATATTGTCTT
CCGGTCGCATCATACGTTCATGCCGAGCAGTATCGTTCATTTTTCAAAGA
GAGAACATTGGCTGAGAGGCTGGCAGGACGCTACGCTTGAAACCATTCAG
TGCGTCTCGTCCTGCGCTGTTCACGGAAATAGATCGGCTGCTTTGAGCGA
ATTATATTGAAGGCCGGTTCACGAACAGGATACAATCGTGAATATCATGT
ACCCTTCACAGGGGGACGCCACCTCCCCCTTTACCGAGGTGTTGGATGTC
AGCATCCCATGTGGAAACCTTGTCAAGGCCGAAAGGGTGGAAACCTTGTT
TGGATCGAAAGGGCCCCAACGCCTGGCCTTTCAACGACCTTAGGGGGGGG
GGGGGCTTTCGACCTTGACAAACGTCGTGTTCGTGCTTGAGCGGTGCGGT
CCCTCGTCAAAGGCGATCCACCCGCCTGCGTTGTTAGAGGTCGAGAAGCG
ACGGCCTATCCCCGATACAGAGCCCGGGACTGTAATTATACATATGTGTT
TTTGTCTGTATGCTTGACGATAAACGACTGATTGGTGCTGCGACATCGCT
CCAAAGCTAGTCGACCACGTACAGAAGGCAATCACGGCCGCGCTCCACAT
GCTGGCCAACCCCTGGAACCTCTTTGCCTGCCCACCTTTCTCCTCTGCTC
TATGTTTCTCCGCCCTTTCAACCGTGTCAGGTCTCTCCGCCTCGGCCTTT
CTTTGCAACACAGCGATGGGCTCATATCATACCCCCTAAAAACAAAGTCC
TTCGTAGTGCTTTTTGTTCCCGCGGACCTGCGCTAGTAAATGACGCCATG
CTTCTTCGATATTATCTTCAGTGAGTAACCAATTGATCTGTCTGTGCACC
TCGGATGAACTTACGCGCGATGGGCAGGATGAGAAGAGGCCGATGCTGGT
CCGGCTCTGGTACTGCGACATCGGGATAAGGGGCAACGTGCCGAACTGGA
CGGTGCGCGAGAAACTTCTCGACAAATTCCTTGTGGGAGGCAAGCCCGTT
CCGGACAGGGTGCTCGACGTGAGTGAAAGTGAATTGATATTTACTATTGT
AAGACCGTTTTCTATTTGACAGTTTCATATCTGCCGCAGGCACAAAGACT
TATCGATAGATTCCTTGTGTCCGACGAGCCCGTCCCAGGCAAAAGGGTGC
TCGACGTTGTCAGTGAGCGAACCCACACGAAACATTCTTCTTTCACGCAG
TTTTTGCTTTTAGCATCTGTCATGTATGATGAGGTATTTTTTGTCAAAAC
CACCTCCGTTTGAAGCATTTTTGTGTGTTGTCTCCCTTCGATGTATGTAG
GCGCTTCAACCAGGGTAACACCGGAGGAAGGTTACATCGGAGATTTTGTT
TTTACTATATTTTTCACGATTATTTTTTAATGCATGTCTTCCAGCAGTTT
TCATCTCGAGAAGGGTTGGGCCGCCCTCTTTCCCCTGTTGATCTTGTGTT
TGTTTGGGAGGAAAACGCATACCAGCAGTTTTCATCTCGAGAAGGGTTGG
GCCGCCCTCTTTCCCCTGTCGATCTTGTGTTTGTTTGGGAGGAAAACTCA
TACAAAATATAACGCTCTTGGAGGCATGTATATGCTGAATTAGAAACAAT
ATGCCGGTATGCACGACGTAACGGGTTGCAGTATGTGACGGCTTTGGCAG
ACCCGCGACTACGCTCCTGACGTAAACGAACGCTGACCACTAACCCTGTT
GTAGCGTTAAACACGTAAATTCAACTTTCGGCTTCGTTCAAAAGATTCGG
TTCTGTGCGTAGGACATGGGTCGCAAAACAATCCACACCCCTTTCGCACC
GATGCTCGATCGATTGCTATGCACGACACCCCACAACGAGGAGGATGAAA
CGCCAACACCGACTGACTCATTGAAAAGACGCGTTTTCGGCACATCGACG
AGATGGTCACATGATTTCGACGCCGATCGACCATCCGTCTATCGATACAG
CACCGACGACATTTTTTGCGCGACTCGGTATCAAGCTTTGAAAAGCGGTT
CAGAGGGGTCCCGGGGTATCAACTCATATGGGGGTCCTGTGGTGCCTCTC
TCTCTAATGTGGAGAAAATGAGCTTGCGAGGCTTGTGTCCAGAGGGTGTT
AATTTATCTTGTGCGGCCTGCGGTACGTGGTGGCATGTTGTGGTGCCTGC
ATACGGCACAGAACCGCCGTGCATGACGAGACCTAACCTTCGAGATTCGT
TTTTTTTTTCTGGCAGATCGTACGTATGTATAAGCGAATGGCCGACGCGG
GGTTCTTGGCGAAGGAGCCCGGGATGGGAGCAGCAGACATCGCCAAGACC
TACGAAAGGTGTCATGAATCGAAGGGCAGCGCCGCGTCTGAGAGGACCGT
TGTTGGTCCTGCTGTCCTGTTCTTAATTCGCGTAGTGCCTTGTCGAGATC
TAGCAAGTGGTCTACCAGCCGAAGTTGACAAAATATAACAAGCCTGAAGG
AAGAAAAGTACGTGCCCCACGAACGCACATATCGGCCACGCTTTGTCGCA
GTACAGTACTCCAGCCATGTTCCTTATTATTCTGAGAAACGACAGACACC
GAAGTAGCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CCCCCTCTCCCTCTCCCTCTCTCTCTACGCTGCTGCTGCTGCTGCTGCTG
CTGCTAAATCGACACTACCACCCTTCACATGTCTCTACAAAAGGAACGGC
AAACGACAGACAAAGCAACGTTGCGGCCGGTGTCATCATAGTGATGAGAG
CCCCCGTTGAGAAAGTAGGCTTCTTTCACGGCGAAATTAACAGGGACTGT
TGGGTTCGCAACATACGCATGCCCAGAGAACAGCTAGAGGACTCCTACCC
ATACCCTGTTTAATTATACGTGCACAACACTCAATACGAGACCGAGGTTC
AATTTTTCAAGCGGAAATACACTTTTGGCAAGAAAGTGCTGCACTGGAGT
CACCTGTGAGCAGAGGCTCTTTTCAAGCTAAGAACCTCCCTCAGCCTCTG
CAAAGTTCGCGCTCTCTCCCTGGATATCCTTGACAAATTTTCACACGAAC
GCCAAGTGTTCCGTCAGACGGGCGTTTCGACTAGTAGACTATAGTCATCT
CTCGGTGACGGAGTGAGCCAAAAGTGCCCTGACCTTGCCTCGAGCCTCCA
CCGCTTGTCGGTGCGGCAGAGCGTACGTGCGCTCAAGTGCGGCCAGGTAT
TTACTGCGGTTGCGGCATTTTCCTTCACCTCCCCGACGACCCTCAACGTT
TCGCTGTCCGCTGCCTGCGCCTTCTGCTTGTGTGCGATGCGCGTGAAATA
AATAGGAAACGCATGTGTTAATTGTTTTTGCCTGAACCGTAGAGGTTTCC
TCGGCGTTGTTGGTTGTACCCGCCTCAAACCCTCCTCAGACAGAGTCCGT
CGGGCTGTTTCCTACTTTTTCGTGTCCCAACATTTAAGAAGCACTTGCCC
CCGAACCCACGTTAGCACTACCTGCTGCTTTCCCGATGTGTTGGAGGTTG
TAATAGTTATCTCTTTCGCGTGCAATTGGTGGTTTGTTTGCCAGCACTCT
CCCCATCTCAATTCTACTGTACTACCTCTAAATGGCCGTGTTTGTCATGA
TATACGTACGAAACCACAGATTCCTCAAGCACCTTCCGGAGTTGAGGCGC
CCGCAATCTAGCTCTCATAATCGAGGCGGTCGAAGGTCTGTGTCCCAGGC
AAGGACGCAGCAGGCACGCGCCGATTCCAGAACCGTGACGGGCCAGACAG
CGGCAACCGTCGTTGCTGCAGCATCTGCGCCGGCAGCAGCAGTAGCGACT
GGAGGAACATAATCTCACGGCCGAGGACAGATCGGCCTCACAATGAAGAG
GGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig89:120819..124871-

>mRNA_P-littoralis_Contig89.17.1 ID=mRNA_P-littoralis_Contig89.17.1|Name=mRNA_P-littoralis_Contig89.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig89:120819..124871- (Pylaiella littoralis U1_48)
ATGCTGGTCCGGCTCTGGTACTGCGACATCGGGATAAGGGGCAACGTGCC
GAACTGGACGGTGCGCGAGAAACTTCTCGACAAATTCCTTGTGGGAGGCA
AGCCCGTTCCGGACAGGGTGCTCGACATCGTACGTATGTATAAGCGAATG
GCCGACGCGGGGTTCTTGGCGAAGGAGCCCGGGATGGGAGCAGCAGACAT
CGCCAAGACCTACGAAAGATTCCTCAAGCACCTTCCGGAGTTGAGGCGCC
CGCAATCTAGCTCTCATAATCGAGGCGGTCGAAGGTCTGTGTCCCAGGCA
AGGACGCAGCAGGCACGCGCCGATTCCAGAACCGTGACGGGCCAGACAGC
GGCAACCGTCGTTGCTGCAGCATCTGCGCCGGCAGCAGCAGTAGCGACTG
GAGGAACATAA
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