mRNA_P-littoralis_Contig889.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig889.32.1
Unique Name	mRNA_P-littoralis_Contig889.32.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.170e-58
Identity = 90/129 (69.77%), Postives = 108/129 (83.72%), Query Frame = 1

Query:   10 TRRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAIERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 396
            +RRCC + ++S + AFKEQ NRVEE+FEAAGH CIFL KYHPE NAIER WG++K+IERRVCDYS+ SLL RLP TLS+++LSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  339 SRRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAKYHPELNAIERFWGYTKSIERRVCDYSVLSLLARLPMTLSTVTLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 467

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BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 5.960e-57
Identity = 90/129 (69.77%), Postives = 108/129 (83.72%), Query Frame = 1

Query:   10 TRRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAIERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 396
            +RRCC + ++S + AFKEQ NRVEE+FEAAGH CIFL KYHPE NAI+R WG++K+IERRVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  532 SRRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAKYHPELNAIQRFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 660

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BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 2.130e-56
Identity = 91/129 (70.54%), Postives = 108/129 (83.72%), Query Frame = 1

Query:   10 TRRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAIERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 396
            +RRCC + ++S + AFKEQ NRVEE+FEAAGH CIFL KYHPE NAIER WG++K+IERRVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  980 SRRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAKYHPELNAIERFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 1108

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BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Match: A0A6H5JR66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR66_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 4.110e-46
Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 1

Query:    4 GDTRRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAIERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 396
            G  RRCC+  VLS L AF+E+ N VE++F+A GH CIFLPKYHPE NAIER WG+ K + R  C+YS++ +L+ LP  LS +    IR W+R++WLY+EAY  GL+ Y++YRDLK+W  HR +T R DAV+
Sbjct:  168 GKRRRCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKYLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHREATARGDAVI 298

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BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Match: A0A6H5KWI8_9PHAE (Uncharacterized protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI8_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.590e-45
Identity = 71/128 (55.47%), Postives = 95/128 (74.22%), Query Frame = 1

Query:   13 RRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAIERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 396
            RRCC+  VLS L AF+E+ N VE++F+A GH CIFLPKYHPE NAIER WG+ K + R  C+YS++ +L+ LP  LS +    IR W+R++WLY+EAY  GL+ Y++YRDLK+W  HR +T R DAV+
Sbjct:  108 RRCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRVWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHREATARGDAVI 235

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BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Match: A0A6H5LC28_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC28_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.850e-45
Identity = 71/128 (55.47%), Postives = 95/128 (74.22%), Query Frame = 1

Query:   13 RRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAIERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 396
            RRCC+  VLS L AF+E+ N VE++F+A GH CIFLPKYHPE NAIER WG+ K + R  C+YS++ +L+ LP  LS +    IR W+R++WLY+EAY  GL+ Y++YRDLK+W  HR +T R DAV+
Sbjct:  108 RRCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHREATARGDAVI 235

[Close]

BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Match: A0A6H5KKI5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 7.100e-45
Identity = 70/131 (53.44%), Postives = 93/131 (70.99%), Query Frame = 1

Query:    4 GDTRRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAIERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 396
            G  RRCC+  VLS L AF+E+ N VE +F+A GH CIFLPKYHPE NAIER WG+ K + R  C+YS++ +L+ LP  LS +    IR W+R++WLY+EAY  GL+ Y++  DLK+W  HR +T R DAV+
Sbjct:   71 GKRRRCCVVRVLSELKAFREELNMVENLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLECCDLKEWGKHREATARGDAVI 201

[Close]

BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Match: A0A6H5KXM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 7.940e-45
Identity = 71/128 (55.47%), Postives = 95/128 (74.22%), Query Frame = 1

Query:   13 RRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAIERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 396
            RRCC+  VLS L AF+E+ N VE++F+A GH CIFLPKYHPE NAIER WG+ K + R  C+YS++ +L+ LP  LS +    IR W+R++WLY+EAY  GL+ Y++YRDLK+W  HR +T R DAV+
Sbjct:  192 RRCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHREATARGDAVI 319

[Close]

BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Match: A0A6H5KZJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZJ0_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.500e-44
Identity = 71/128 (55.47%), Postives = 95/128 (74.22%), Query Frame = 1

Query:   13 RRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAIERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 396
            RRCC+  VLS L AF+E+ N VE++F+A GH CIFLPKYHPE NAIER WG+ K + R  C+YS++ +L+ LP  LS +    IR W+R++WLY+EAY  GL+ Y++YRDLK+W  HR +T R DAV+
Sbjct:  223 RRCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHREATARGDAVI 350

[Close]

BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Match: A0A6H5JIH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.780e-44
Identity = 71/128 (55.47%), Postives = 95/128 (74.22%), Query Frame = 1

Query:   13 RRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAIERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 396
            RRCC+  VLS L AF+E+ N VE++F+A GH CIFLPKYHPE NAIER WG+ K + R  C+YS++ +L+ LP  LS +    IR W+R++WLY+EAY  GL+ Y++YRDLK+W  HR +T R DAV+
Sbjct:  232 RRCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHREATARGDAVI 359

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig889.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K7K1_9PHAE	1.170e-58	69.77	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K2M3_9PHAE	5.960e-57	69.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7W4_9PHAE	2.130e-56	70.54	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JR66_9PHAE	4.110e-46	54.96	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWI8_9PHAE	1.590e-45	55.47	Uncharacterized protein n=18 Tax=Ectocarpus sp. CC...	[more]
A0A6H5LC28_9PHAE	1.850e-45	55.47	Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKI5_9PHAE	7.100e-45	53.44	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KXM8_9PHAE	7.940e-45	55.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZJ0_9PHAE	1.500e-44	55.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JIH5_9PHAE	1.780e-44	55.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig889	contig	P-littoralis_Contig889:98366..98883 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	588596.U9SSA4
Model size	396
Max annot lvl	4751\|Fungi
Hectar predicted targeting category	other localisation
Exons	2
Evalue	1.14e-26
EggNOG OGs	29JY0@1\|root,2RT6R@2759\|Eukaryota,39VBJ@33154\|Opisthokonta,3P12S@4751\|Fungi
Cds size	396

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791776.196787-CDS-P-littoralis_Contig889:98365..98490	1680791776.196787-CDS-P-littoralis_Contig889:98365..98490	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig889 98366..98490 +
1680791776.2121177-CDS-P-littoralis_Contig889:98612..98883	1680791776.2121177-CDS-P-littoralis_Contig889:98612..98883	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig889 98613..98883 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig889.32.1	prot_P-littoralis_Contig889.32.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig889 98366..98883 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig889:98366..98883+
coding sequence from alignment at P-littoralis_Contig889:98366..98883+

protein sequence of mRNA_P-littoralis_Contig889.32.1

>prot_P-littoralis_Contig889.32.1 ID=prot_P-littoralis_Contig889.32.1|Name=mRNA_P-littoralis_Contig889.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
EGDTRRCCLRFVLSNLPAFKEQKNRVEEVFEAAGHRCIFLPKYHPECNAI
ERVWGHSKAIERRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVE
AYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL

mRNA from alignment at P-littoralis_Contig889:98366..98883+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig889.32.1 ID=mRNA_P-littoralis_Contig889.32.1|Name=mRNA_P-littoralis_Contig889.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=518bp|location=Sequence derived from alignment at P-littoralis_Contig889:98366..98883+ (Pylaiella littoralis U1_48)
GAGGGTGATACTCGACGCTGTTGCCTCCGGTTCGTACTCAGCAATCTGCC
GGCATTCAAGGAACAGAAGAATCGCGTGGAGGAGGTTTTCGAGGCAGCCG
GACATCGGTGTATCTTCCTCCCAAAGTAAGTGTTTTCGCATAATATCGGT
CATGAGGTATTTTCTGAAGTGGCACATGATTTTAACCGACTTGTATACGA
ATAACTAAGAACACCGCTGCACGTCTCCGTGAATTTTCCTTCTCCAGGTA
TCACCCGGAGTGCAACGCCATCGAGCGAGTCTGGGGGCACTCTAAGGCCA
TCGAACGCCGGGTGTGCGATTATTCCATCAAGAGTCTTCTAAAACGACTC
CCTGCCACCCTTAGCTCCATGTCTCTGTCGCTCATTCGCAAGTGGGCCCG
GATTTCGTGGCTCTATGTTGAGGCGTATGCCACGGGGCTCGACGGTTACA
TGCAATACAGAGACCTAAAGAAGTGGACGTGCCACCGCTCATCTACTGAT
CGGGTCGATGCCGTGTTG

Coding sequence (CDS) from alignment at P-littoralis_Contig889:98366..98883+

>mRNA_P-littoralis_Contig889.32.1 ID=mRNA_P-littoralis_Contig889.32.1|Name=mRNA_P-littoralis_Contig889.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig889:98366..98883+ (Pylaiella littoralis U1_48)
GAGGGTGATACTCGACGCTGTTGCCTCCGGTTCGTACTCAGCAATCTGCC
GGCATTCAAGGAACAGAAGAATCGCGTGGAGGAGGTTTTCGAGGCAGCCG
GACATCGGTGTATCTTCCTCCCAAAGTATCACCCGGAGTGCAACGCCATC
GAGCGAGTCTGGGGGCACTCTAAGGCCATCGAACGCCGGGTGTGCGATTA
TTCCATCAAGAGTCTTCTAAAACGACTCCCTGCCACCCTTAGCTCCATGT
CTCTGTCGCTCATTCGCAAGTGGGCCCGGATTTCGTGGCTCTATGTTGAG
GCGTATGCCACGGGGCTCGACGGTTACATGCAATACAGAGACCTAAAGAA
GTGGACGTGCCACCGCTCATCTACTGATCGGGTCGATGCCGTGTTG