mRNA_P-littoralis_Contig889.14.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig889.14.2 vs. uniprot
Match: D7FPX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX3_ECTSI) HSP 1 Score: 602 bits (1553), Expect = 8.010e-201 Identity = 335/646 (51.86%), Postives = 380/646 (58.82%), Query Frame = 1
Query: 562 EIEEMAEDWTEHTSTRAWPGAVLSNAHSVYSEISEEILTRWGHKYANTPLFSGGMRFSDGGTVVENKFLNAVLEQKGFVAAFTGISTTAAHDCLYEQSFPVLLNETMGRLMSAAGVRFEAINVAMGNTRVAPYSYCVDAHAGLNADIISWDMSMVATSYACGRAAAGVELFIRTASSLPRRPAVLLTDAFPDQESCTNGHLHLFKKLDSTLTGDCDPDRDLLEVYRDFGLHQISPRSLVPEVTCGDDLFARARLFNRTEKDYPAPVRWHAGPTGHVLVGDMLFMHYAAVLMSALERLDAVRPGITAAGLRQHESLSELGRNSLRESLGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYMGGGRGDILPPPAWCKGLRFCDWAGSYRCANTYSPLAGRGGSRLLDMVSGRTPPVLNRDHSENFVEPSPGRWAVTLNEEVGKLKAYLKMPPPDGFHHPIDMKWVLVGNKDSGPIEFEFETLGARPREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPTPGQGAVFDSRITICKPDFIDRVAFNETSGVRFSVDGVQV-SVVELAHHGLHEQSCVLLDADVGVGRHTVRVEPLEAGERFVAISHVVYPA 2496
EIE M E WT+H S PGAVL NA SVYSEIS +ILTRWG+KYANTPLFSGGM+FSDGG VVENK LNAV+EQ+GF+AAFTG+STTA HDCL+EQS+PVLLNET GRLM+A GV+FEAINVAMGNTRVAPYSYCV+AHAGL AD+ISWDM+++ S CG+AAAG+ELF+R+A+ LP+RP VLL DA P+Q+ CTNGHL KKLD WHAGPTGH+LV DMLFM YA V + ALERL+ V+PGITAAGLRQ +LS GR +L ESLGL A+MGGGRGDILPPP+WCKG RFC AGSYR SE FVEPS G WAVTLNEE +K YLK+ PP GFHHPID KWVLVG+ +GPIEFEFETLG P T FDSR+T+CKPDFIDRV FNETSGVRFSVDG+QV + VEL GLH QSC LLD VGVGRHTV+VEPL+ GE +VAISHV+YPA
Sbjct: 145 EIEGMDEHWTQHASVAQPPGAVLENARSVYSEISSDILTRWGYKYANTPLFSGGMKFSDGGKVVENKMLNAVVEQEGFLAAFTGVSTTAGHDCLFEQSYPVLLNETFGRLMAATGVKFEAINVAMGNTRVAPYSYCVEAHAGLEADLISWDMTLMVASNECGKAAAGIELFVRSATVLPKRPVVLLMDATPNQDVCTNGHLRQIKKLDDG---------------------------------------------------------WHAGPTGHLLVADMLFMAYAEVFLRALERLNGVKPGITAAGLRQLNALSANGRLNLWESLGLDGGGATDARPDLHGEATAADSQSGSNNYP----------------AFMGGGRGDILPPPSWCKGYRFCQGAGSYR--------------------------------SEYFVEPSQGHWAVTLNEEAQSIKDYLKVSPPRGFHHPIDYKWVLVGDAAAGPIEFEFETLGIPPAGRHRRRRAKVEEGEEEDAHTFSSSAGREEPAPESAGANEEFSNSAGIDAEKTRPTEDATDFDSRVTVCKPDFIDRVQFNETSGVRFSVDGIQVETTVELVQVGLHVQSCALLDVAVGVGRHTVKVEPLKVGEPYVAISHVLYPA 685
BLAST of mRNA_P-littoralis_Contig889.14.2 vs. uniprot
Match: D8LSB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB3_ECTSI) HSP 1 Score: 334 bits (857), Expect = 1.160e-101 Identity = 214/446 (47.98%), Postives = 256/446 (57.40%), Query Frame = 1
Query: 1225 LEVYRDFGLHQISPRSLVPEVTCGDDLFARARLFNRTEKDYPAPVRWHAGPTGHVLVGDMLFMHYAAVLMSALERLDAVRPGITAAGLRQ-------------------HESLSELGRNSLRESLGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYMGGGRGDILPPPAWCKGLRFCDWAGSYRCANTYSPLAGRGGSRLLDMVSGRTPPVLNRDHSENFVEPSPGRWAVTLNEEVGKLKAYLKMPPPDGFHHPIDMKWVLVGNKDSGPIEFEFETLGARP-REGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPTPGQ--GAVFDSRITICKPDFIDRVAFNETSGVRFSVDGVQVSVVELAHHGLHEQSCVLLDADVGVGRHTVRVEPLEAGERFVAISHVVYPA 2496
+EVYR+FGLH+++P SLVPE TCG+++F RL+N + KD P P WHAGP GH LV DMLFMHYA V + A+ RL+ V PG+TA LR ES+ +L SLRE+LGL YMGGGRGDILPPPAWC G RFC AGSYRCANTY P A G+RL+ MVS ++P +LN DH E EP+ G WA+TLNEE +L YLK PP+GFHHPID+K VLVG+ SG IEFEFET+G EG XXXXXXXXX XXXXXXXXXXX Q DSR+ ICKPDFI RV F +++ V F VDGV EL + + SCV+L+ DVGVGRHTV VEPL +G +VA+SH++YPA
Sbjct: 1 MEVYREFGLHRMTPSSLVPENTCGNEVFDYHRLYNASLKDIPRPSSWHAGPPGHQLVADMLFMHYAEVFLKAVGRLEDVAPGVTARQLRDSGGEIIPGDAAVSSSERETRESIRDL--TSLRETLGLVVEAVDDNDN-----------------------------------VYMGGGRGDILPPPAWCAGWRFCLGAGSYRCANTYFPQAAGKGARLVGMVSAKSPAILNLDHKEMIAEPTSGHWAMTLNEESERLLDYLKTFPPEGFHHPIDLKLVLVGDAASGAIEFEFETIGVPAGTEGWLSEEXXXXXXXXXDDRAEELVDGNXXXXXXXXXXXDEKQEEAGSHRAMQDQLQQMNSMSQDSRVVICKPDFITRVDFTDSTQVTFRVDGVVAIAEELEQGFMTQGSCVILETDVGVGRHTVSVEPLHSGAPYVAVSHLLYPA 409
BLAST of mRNA_P-littoralis_Contig889.14.2 vs. uniprot
Match: A0A6H5JNP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP8_9PHAE) HSP 1 Score: 302 bits (774), Expect = 5.190e-88 Identity = 232/555 (41.80%), Postives = 280/555 (50.45%), Query Frame = 1
Query: 1021 MVATSYACGRAAAGVELFIRTASSLPRRPAVLLTDAFPDQESCTNGHLHLFKKLDSTLTGDCD-PDRDLLEVYRDFGLHQISPRSLVPEVTCGDDLFARARLFNRTEKDYPAPVRWHAGPTGHVLVGDMLFMHYAAVLMSALERLDAVRPGITAAGLR----------QHESLSE-----------LGRNSLRESLGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYMGGGRG-DILPPPAWCKGLRFCDWAGSYRCANTYSPLAGRGGSRLLDMV----------------SGRTPPVLNRDHSENFVEPSPGRWAVTLNEEVGKLKAYLKMP-PPDGFHHPIDMKWVLVGNKDSGPIEFEFETLGARPREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----TPTPGQGAVF-------------------DSRITICKPDFIDRVAFNETSGVRFSVDGVQVSVVELAHHGLHEQSCVLLDADVGVGRHTVRVEPLEAGERFVAISHVVYPA 2496
M + AC +AAA VELFIR++ LPRRPA+L+ DA DQ + G L L K + G C P +L++ YRDFG+H I SL+ E GD+ FA L+ K YP P++WH P GH LV DMLFMHY + + A++ L+ PG+TAA LR Q E E + +LRE++GL +YMGGGRG +LP WC G C AG+YRCANTY PL G GSRLLDMV G + NRD + PS GRWAVTLNE Y+ P+G+H PID+KWVLVG+ DSGPIEFEF T G + XXXXXXXXXXX XXXXXXXXXXXXXX P GQ V DSR+ +CKPDFIDRV F + GV FS+DGV+ SVV GL +SC LL A+VG GRH ++V PL GE FVAISHV+YPA
Sbjct: 1 MEIATLACEKAAAAVELFIRSSLVLPRRPAILVLDAQADQGA--KGRLKLLKHRNRRFLGYCGGPKPNLMDAYRDFGVHNIFASSLILEYAAGDERFAHEVLY-AAGKHYPRPMKWHPAPAGHELVADMLFMHYGKLFLEAIDLLEQASPGLTAAELREKKEQQGQQPQQERSREHDGSGSSDHGTISMKALREAVGLAGDNPNVFVRRPDDKARRGGGEGEESPIRPPPTEC----------SYMGGGRGRGVLPLAEWCSGAH-CQGAGNYRCANTYYPLEGNQGSRLLDMVVSDSDGEGEGGGENGDPGNPVGLFNRDEEKLRASPSEGRWAVTLNEVSRPAIDYMMNGRAPEGYHKPIDVKWVLVGDADSGPIEFEFFTGGVPLDKAIDKVTTRSEAXXXXXXXXXXXVATGVQGVEGAAIHXXXXXXXXXXXXXXXTAVAPVGGQVGVLPLGPVEAAAAAALAGTKVVDSRVVVCKPDFIDRVDFADPGGVVFSIDGVETSVVPAEEDGLMTKSCSLLAAEVGPGRHRLKVVPLRRGEPFVAISHVIYPA 541
BLAST of mRNA_P-littoralis_Contig889.14.2 vs. uniprot
Match: D7FUH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH4_ECTSI) HSP 1 Score: 271 bits (694), Expect = 2.800e-78 Identity = 168/393 (42.75%), Postives = 204/393 (51.91%), Query Frame = 1
Query: 880 MGRLMSAAGVRFEAINVAMGNTRVAPYSYCVDAHAGLNADIISWDMSMVATSYACGRAAAGVELFIRTASSLPRRPAVLLTDAFPDQESCTNGHLHLFKKLDSTLTGDCD-PDRDLLEVYRDFGLHQISPRSLVPEVTCGDDLFARARLFNRTEKDYPAPVRWHAGPTGHVLVGDMLFMHYAAVLMSALERLDAVRPGITAAGLR-----------QHESLSELGRNS----------LRESLGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYMGGGRG-DILPPPAWCKGLRFCDWAGSYRCANTYSPLAGRGGSRLLDMV----------------SGRTPPVLNRDHSENFVEPSPGRWAVTLNEEVGKLK 1941
MGRLM+AAGV + AINVAMGNTR APYSYCVDAHAGL+ADI+SW M + C AAA VELF+R++ LPRRPA+L+ DA DQ + G L L K + G C+ P R+L+E YRDFG+H I SL+ E GD+ FA L+ K YP P++WH P GH LV DMLFMHY + + A++ L+ PG+TAA LR Q S GR S LRE++GL +YM GGRG +LPP WC G C AG+YRCANTY PL G GSRLLDMV G + +RD + PS GRWAVTLNE + K
Sbjct: 1 MGRLMAAAGVGYTAINVAMGNTRAAPYSYCVDAHAGLDADIVSWSFGMEIATLPCEEAAAAVELFVRSSLVLPRRPAILVLDAQADQGA--KGRLELLKHRNRRFLGYCNGPKRNLMEAYRDFGVHNIFASSLILEHAAGDERFAHEILY-AAGKHYPRPMKWHPAPAGHELVADMLFMHYGKLFLEAIDLLEQASPGLTAAELRDKNEQPGQQPQQEGSRENDGRGSSDHGTISMEALREAVGLARDNPNVFVRRPDGKPRRGGGEGEEPPIRPPPTEC----------SYMAGGRGRGVLPPAEWCSGAH-CQGAGNYRCANTYYPLEGNQGSRLLDMVVSDSDGEGEGGGENGDPGNPVGLFSRDEEKLRASPSEGRWAVTLNEVKAERK 379
BLAST of mRNA_P-littoralis_Contig889.14.2 vs. uniprot
Match: A0A835YN73_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN73_9STRA) HSP 1 Score: 205 bits (522), Expect = 6.960e-54 Identity = 145/457 (31.73%), Postives = 202/457 (44.20%), Query Frame = 1
Query: 736 DGGTVVENKFLNAVLEQKGFVAAFTGISTTAAHDCLYEQSFPVLLNETMGRLMSAAGVRFEAINVAMGNTRVAPYSYCVDAHAGLNADIISWDMSMVATSYACGRAAAGVELFIRTASSLPRRPAVLLTDAFPDQESCTNGH------LHLFKKLDSTLTGDCDPDR-----DLLEVYRDFGLHQISPRSLVPEVTCGDDLFARARLFNRTEKDYPAPVRWHAGPTGHVLVGDMLFMHYAAVLMSALERLDAVRPGITAAGLRQHESLSELGRNSLRESLGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYMGGGRGDILPPPAW-----CKGLRF---CDWAGSYRCANTYSPLAGRGGSRLLDM-VSGRTPPVLNRDHSENFVEPSPGRWAVTLNEEVGKLKAYLKMPPPDGFHHPIDMKWVLVGNKDSGPIEFEFE 2046
DGG V+ + L AV+ Q+ F AFTGIS TA HD L+ QS+P++L + ++ AGV +N AMGNT PYSYCV+AHAG + D++SW+MSM + C R A VE +IRTA +LP RP LL + D+ C H +K G + R DL+ Y+D+G+H ++ +L+ TCG F + RL+ + P WH GP H L+ ++L +Y +L AL LDA PG+T L+ E LR+ L P W C RF C +GSYRC TY P + S LD V+ T LNR ++ + W V +NE + + + D P+D KWVL G +GP+ F+FE
Sbjct: 11 DGGAAVKQRLLRAVVGQRNFTMAFTGISNTAGHDNLFAQSYPMVLERLLKPVLQLAGVELRVLNGAMGNTDFLPYSYCVEAHAGAHPDVVSWEMSMQIGNTPCTRTAELVETWIRTALALPSRPVPLLLNCQADRGRCARDREAPPTLSHTMEKAVGRCVG-AERTRGTLQHDLMSWYKDYGIHSLNLETLMAAHTCGYPAFEKKRLYGG-KVGTPRTKSWHPGPGAHRLMAEVLAANYLGLLRGALSELDAAAPGVTLQELQARE-------RRLRQCAV-------------------------------------------------------HLVPQLWQSHAPCCHRRFVLLCARSGSYRCLTTYYP--NQDASTQLDRYVTDNT--TLNRKPHFKYLPTNTSEWQVIVNEPMRGITGFQF----DNPQWPVDRKWVLAGAASAGPLNFKFE 395
BLAST of mRNA_P-littoralis_Contig889.14.2 vs. uniprot
Match: A0A835YRS9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS9_9STRA) HSP 1 Score: 172 bits (436), Expect = 2.300e-41 Identity = 92/252 (36.51%), Postives = 140/252 (55.56%), Query Frame = 1
Query: 706 PLFSGGMR-FSDGGTVVENKFLNAVLEQKGFVAAFTGISTTAAHDCLYEQSFPVLLNETMGRLMSAAGVRFEAINVAMGNTRVAPYSYCVDAHAGLNADIISWDMSMVATSYACGRAAAGVELFIRTASSLPRRPAVLLTDAFPDQESCTNG-HLHLFKKLDSTLTGDCD--------PDRDLLEVYRDFGLHQISPRSLVPEVTCGDDLFARARLFNRTEKDYPAPVRWHAGPTGHVLVGDMLFMHYAAVL 1431
PLF DGG V+ + L+A++ Q+ F AFTGIS TA HD +S+P++L + ++ AGV F +N AMGNT PYSYCV+AHAG + D++SW+M M + +C + A VE +IR SLP RP LL + D+ C G + ++ + G C+ + L + YR++GLH ++ L+ + CG+ LFA+ RL+ + P WH GP GH+L+ ++L +Y +L
Sbjct: 14 PLFKDAWYDLPDGGRAVKQRLLHAIVHQRNFTMAFTGISNTAGHDNRITESYPMVLEQLFKPVLQLAGVNFHVLNGAMGNTDFLPYSYCVEAHAGAHPDVVSWEMGMEVGNRSCRQTAMAVEAWIRAVLSLPSRPVPLLLNCQADRGGCARGSNAPSAHRVFERVVGRCEGKEHSEYTEEHQLTQWYREYGLHGLNLEFLLAKHACGNPLFAKERLYGG-KMGTPRTKSWHPGPPGHLLMAEVLMANYIGLL 264
BLAST of mRNA_P-littoralis_Contig889.14.2 vs. uniprot
Match: A0A6H5JJ65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ65_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 5.360e-11 Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1
Query: 889 LMSAAGVRFEAINVAMGNTRVAPYSYCVDAHAGLNADIISW 1011
+M A V + AINVAMGNTR APYSYCVDAHAGL+ADI+SW
Sbjct: 8 VMPVAEVTYTAINVAMGNTRAAPYSYCVDAHAGLDADIVSW 48
BLAST of mRNA_P-littoralis_Contig889.14.2 vs. uniprot
Match: A0A7S1BW83_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BW83_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.090e-7 Identity = 60/230 (26.09%), Postives = 94/230 (40.87%), Query Frame = 1
Query: 760 KFLNAVLEQKGFVAAFTGISTTAAHDCLYEQSFPV----LLNETMGRLMSAA--GVRFEAINVAMGNTRVAPYSYCVDAHAGLNADIISWDMSMVATSYACGRAAAGVELFIRTASSLPRRPAVLLTDAFPDQESCTNGHLHLFKKLDSTLTGDCDPDRDLLEVYRDFGLHQISPRSLVPEVTCGDDLFARARLFNRTEK-----DYPAPVRWHAGPTGHVLVGDMLFMH 1416
+ L A + + FV AF G STT + QS+P +L E M L+ +F N +G PY +C++ G +AD++SW+ ++ G G+E ++R SS+P P +++ D+ G L + +K + RD + VY D S+ E R F E+ P V+WH H L G M+ MH
Sbjct: 118 RILAARQDDRPFVMAFAGYSTTVGRGNYFNQSYPFVAERILREPMLELLGDGTNSGKFIVRNAGIGGIPSFPYGWCLENFLGSDADVVSWEFTL----NEAGGIPGGLEAYVRHVSSMPNVPKLIVKDS-----PKARGRLEVLRKYSKK-----NVLRDAVAVYSDLAAEDFV--SMKKE--------ERPPGFKNWEEFGAPPGSPGQVKWHPTHQEHALYGWMIAMH 323 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig889.14.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig889.14.2 >prot_P-littoralis_Contig889.14.2 ID=prot_P-littoralis_Contig889.14.2|Name=mRNA_P-littoralis_Contig889.14.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=785bp MWAMSSSSSSSSRGGGWFTVCCFLFFISVDSTAAAGLVGGGDSASRDDVDback to top mRNA from alignment at P-littoralis_Contig889:64255..76223- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig889.14.2 ID=mRNA_P-littoralis_Contig889.14.2|Name=mRNA_P-littoralis_Contig889.14.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=11969bp|location=Sequence derived from alignment at P-littoralis_Contig889:64255..76223- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig889:64255..76223- >mRNA_P-littoralis_Contig889.14.2 ID=mRNA_P-littoralis_Contig889.14.2|Name=mRNA_P-littoralis_Contig889.14.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2355bp|location=Sequence derived from alignment at P-littoralis_Contig889:64255..76223- (Pylaiella littoralis U1_48)back to top |