mRNA_P-littoralis_Contig889.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig889.25.1
Unique NamemRNA_P-littoralis_Contig889.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig889.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig889contigP-littoralis_Contig889:88812..89263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size452
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791775.4871266-UTR-P-littoralis_Contig889:88811..888181680791775.4871266-UTR-P-littoralis_Contig889:88811..88818Pylaiella littoralis U1_48UTRP-littoralis_Contig889 88812..88818 +
1680791775.5120823-UTR-P-littoralis_Contig889:89121..892631680791775.5120823-UTR-P-littoralis_Contig889:89121..89263Pylaiella littoralis U1_48UTRP-littoralis_Contig889 89122..89263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791775.5017831-CDS-P-littoralis_Contig889:88818..891211680791775.5017831-CDS-P-littoralis_Contig889:88818..89121Pylaiella littoralis U1_48CDSP-littoralis_Contig889 88819..89121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig889.25.1prot_P-littoralis_Contig889.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig889 88819..89121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig889.25.1

>prot_P-littoralis_Contig889.25.1 ID=prot_P-littoralis_Contig889.25.1|Name=mRNA_P-littoralis_Contig889.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MVESCEERDVPHWRLERRGRASPRLDALLHICSYCCCTVCKYAVPCGVWL
WHTARPCRGRRTFVTDVDTTSEVEPHESAGISVNNDQHLSVTGNIFGWAD
*
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mRNA from alignment at P-littoralis_Contig889:88812..89263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig889.25.1 ID=mRNA_P-littoralis_Contig889.25.1|Name=mRNA_P-littoralis_Contig889.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=452bp|location=Sequence derived from alignment at P-littoralis_Contig889:88812..89263+ (Pylaiella littoralis U1_48)
CGTCAAAATGGTGGAAAGCTGTGAAGAACGAGATGTTCCTCACTGGAGGC
TTGAGAGGAGGGGAAGGGCTTCCCCCCGCTTGGATGCTCTCTTACACATC
TGCAGCTACTGCTGCTGCACCGTATGCAAGTATGCAGTGCCGTGTGGGGT
ATGGTTGTGGCATACAGCTCGTCCCTGTCGTGGGCGTAGGACCTTTGTCA
CAGATGTAGATACTACCTCAGAGGTGGAGCCGCATGAAAGTGCGGGTATT
TCGGTAAACAATGATCAACATTTATCAGTCACTGGGAACATCTTCGGCTG
GGCGGACTAGGAGACACGCCCGCCCTAAATTGGCTTGTGATACGCCCGCG
GAGAAGGGTCCAACGTGTCTAAGGGGCTCTCAACGAGCAGGTACTGGGCC
TTAAAAAGTCTGCAAGCACAAGACAAGTGTGCTTGCTTGCATGAAAGAGT
GC
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Coding sequence (CDS) from alignment at P-littoralis_Contig889:88812..89263+

>mRNA_P-littoralis_Contig889.25.1 ID=mRNA_P-littoralis_Contig889.25.1|Name=mRNA_P-littoralis_Contig889.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig889:88812..89263+ (Pylaiella littoralis U1_48)
ATGGTGGAAAGCTGTGAAGAACGAGATGTTCCTCACTGGAGGCTTGAGAG
GAGGGGAAGGGCTTCCCCCCGCTTGGATGCTCTCTTACACATCTGCAGCT
ACTGCTGCTGCACCGTATGCAAGTATGCAGTGCCGTGTGGGGTATGGTTG
TGGCATACAGCTCGTCCCTGTCGTGGGCGTAGGACCTTTGTCACAGATGT
AGATACTACCTCAGAGGTGGAGCCGCATGAAAGTGCGGGTATTTCGGTAA
ACAATGATCAACATTTATCAGTCACTGGGAACATCTTCGGCTGGGCGGAC
TAG
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