mRNA_P-littoralis_Contig888.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig888.17.1
Unique NamemRNA_P-littoralis_Contig888.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig888.17.1 vs. uniprot
Match: A0A6H5KFA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA5_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.870e-51
Identity = 90/155 (58.06%), Postives = 104/155 (67.10%), Query Frame = 1 
Query:    7 EAAVQYMRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAVFKTAREEIALHYLCCIINHVEEVG 468
            E   + ++GA +D P    +  L   + + I  GLRGD D     V ER D LF  GR  WLGPLW +VK LPPTT LI   W G+VDG+AALEHRKADTK ATAFTLTRFAGW  RL+ WI+ P VLEA  +  +EE ALHYL CIINHVEEVG
Sbjct:    4 EHIARCIQGAKDDDPF---LQNLRVYVRSQIASGLRGDLDGVKKKVWERVDPLFFEGRRRWLGPLWKKVKDLPPTTRLIPDAWNGHVDGVAALEHRKADTKAATAFTLTRFAGWEGRLRAWISQPEVLEAGLQDYQEERALHYLSCIINHVEEVG 155
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BLAST of mRNA_P-littoralis_Contig888.17.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 7.700e-49
Identity = 85/135 (62.96%), Postives = 93/135 (68.89%), Query Frame = 1 
Query:   64 VNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAVFKTAREEIALHYLCCIINHVEEVG 468
            V  +  N+ + I  GLRGDTD  +  V ERGD LFN R  WLGPLW +VKGL PT  LI   W G+VDG+AAL+HRKADT  A AFTL RFAGW  RL  WIN P VLE  FK   EE ALHYL CIINHVEEVG
Sbjct:   18 VQNVRVNVRSQIARGLRGDTDDVIKKVRERGDDLFNRRKSWLGPLWEKVKGLAPTARLISEAWNGHVDGVAALKHRKADTMAAAAFTLARFAGWEGRLTAWINQPEVLEQGFKMYPEEKALHYLSCIINHVEEVG 152
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BLAST of mRNA_P-littoralis_Contig888.17.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.230e-47
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 1 
Query:   37 FEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAVFKTAREEIALHYLCCIINHVEE 462
            F D+ +    N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W G+VDG AA+ HRKADTK ATAFTL RFA W  RLQ WI+ P VLE  FK    + ALHYL CIIN V +
Sbjct:   92 FGDIQDNTPANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARWKGHVDGTAAVSHRKADTKAATAFTLARFADWPGRLQAWIDHPDVLERGFKMYPTKKALHYLSCIINQVAQ 233
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BLAST of mRNA_P-littoralis_Contig888.17.1 vs. uniprot
Match: A0A6H5K4F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F6_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 6.560e-41
Identity = 78/136 (57.35%), Postives = 88/136 (64.71%), Query Frame = 1 
Query:   64 VNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAVFKTAREEIALHYLCCIINHVEEVG 468
            V  L   + + I  GLRG  D     V ER D LF  GR  WLGPLW +V+ L PTT LI   W G+VDG+AA EHRKADTK ATA TLT  AGW  RL+ WI+ P VLEA  +  +EE  LHYL CIINHVEEVG
Sbjct:  175 VQNLWVYVRSQIASGLRGGLDGVKRKVWERVDPLFFEGRRRWLGPLWKKVEDLAPTTRLISDAWNGHVDGVAAFEHRKADTKAATASTLTLNAGWEGRLRAWISQPEVLEAGLRDYQEEKELHYLSCIINHVEEVG 310
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig888.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KFA5_9PHAE2.870e-5158.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE7.700e-4962.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIR5_9PHAE2.230e-4758.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4F6_9PHAE6.560e-4157.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig888contigP-littoralis_Contig888:56295..56976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size471
Hectar predicted targeting categoryother localisation
Exons2
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791775.1518712-UTR-P-littoralis_Contig888:56294..563181680791775.1518712-UTR-P-littoralis_Contig888:56294..56318Pylaiella littoralis U1_48UTRP-littoralis_Contig888 56295..56318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791775.1636443-CDS-P-littoralis_Contig888:56318..563451680791775.1636443-CDS-P-littoralis_Contig888:56318..56345Pylaiella littoralis U1_48CDSP-littoralis_Contig888 56319..56345 +
1680791775.1825054-CDS-P-littoralis_Contig888:56556..569761680791775.1825054-CDS-P-littoralis_Contig888:56556..56976Pylaiella littoralis U1_48CDSP-littoralis_Contig888 56557..56976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig888.17.1prot_P-littoralis_Contig888.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig888 56319..56976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig888.17.1

>prot_P-littoralis_Contig888.17.1 ID=prot_P-littoralis_Contig888.17.1|Name=mRNA_P-littoralis_Contig888.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNG
RLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFT
LTRFAGWGERLQTWINDPSVLEAVFKTAREEIALHYLCCIINHVEEVG*
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mRNA from alignment at P-littoralis_Contig888:56295..56976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig888.17.1 ID=mRNA_P-littoralis_Contig888.17.1|Name=mRNA_P-littoralis_Contig888.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=682bp|location=Sequence derived from alignment at P-littoralis_Contig888:56295..56976+ (Pylaiella littoralis U1_48)
ACCGACGAGGCGGCTGTCCAATACATGCGTGGTGCTTTCGAGGATGTTCC
GGTGAGAATGGCAGTGCATATTGTTGCCTGCTCGCACATTTCAGACATCA
TGCAGCCCATGTTTCCTTTTGGTGTGACCTCGCATAGTCAGACTGGCACT
TGTTGTTTCGCTTGTGTTTCATCACCATCGCAACGAGAGCCTGTTGGGGG
TGATGTTTTCAATCGCTTTTATCTTTTGTTTGTCCGCGGCCTTGTGGTTG
ACGATGAAGCAGAATGCTGGCAAGGTCAACGAGCTGGCCCAGAACATTGC
GAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGTGTCGG
TGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTGGCTC
GGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCACTTGAT
TGTCGCGTGTTGGACGGGCTATGTGGACGGACTCGCCGCCCTGGAACACC
GTAAGGCTGATACTAAGACGGCGACAGCGTTCACCTTGACCCGTTTTGCT
GGCTgGGGGGAGAGACTCCAAACCTGGATAAACGACCCCAGTGTGTTGGA
GGCAGTGTTCAAGACAGCGCGGGAGGAGATTGCATTGCACTACCTATGCT
GCATCATCAATCACGTGGAGGAGGTGGGTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig888:56295..56976+

>mRNA_P-littoralis_Contig888.17.1 ID=mRNA_P-littoralis_Contig888.17.1|Name=mRNA_P-littoralis_Contig888.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig888:56295..56976+ (Pylaiella littoralis U1_48)
ATGCGTGGTGCTTTCGAGGATGTTCCGAATGCTGGCAAGGTCAACGAGCT
GGCCCAGAACATTGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAG
ATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGG
CGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCC
TACAACGCACTTGATTGTCGCGTGTTGGACGGGCTATGTGGACGGACTCG
CCGCCCTGGAACACCGTAAGGCTGATACTAAGACGGCGACAGCGTTCACC
TTGACCCGTTTTGCTGGCTgGGGGGAGAGACTCCAAACCTGGATAAACGA
CCCCAGTGTGTTGGAGGCAGTGTTCAAGACAGCGCGGGAGGAGATTGCAT
TGCACTACCTATGCTGCATCATCAATCACGTGGAGGAGGTGGGTTGA
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