mRNA_P-littoralis_Contig888.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig888.15.1
Unique NamemRNA_P-littoralis_Contig888.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig888.15.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.130e-55
Identity = 111/173 (64.16%), Postives = 118/173 (68.21%), Query Frame = 1 
Query:  106 MSRHCVSALLLVCIAQACLAFVPSWTARLRSSRSQPPASTPAAVTSSLSQPSGATFLVFGTFGACGAHMVYPVRGITSLSALSEGNEEGGGGDHDTREAAGGSPAADEIHAVQDEIRGVEAMIEDVEKETKKVAKKIDDVEAAFAGGSGYLGITDPEALSKEKGQLRREEQLR 624
            MSR+CVS LLLV IAQACLAFVPSWTA  RSSRSQPPASTPAA T SLSQPSG    VFG    CGA   YPV G+TSLSA+SEG EE GGGDH  REAA GSPAADEI AVQ                        D +EAA AGGS YLG+TDPEAL K+ G  R+EEQLR
Sbjct:    1 MSRNCVSVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLG--RKEEQLR 171
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BLAST of mRNA_P-littoralis_Contig888.15.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 9.300e-41
Identity = 100/150 (66.67%), Postives = 113/150 (75.33%), Query Frame = 1 
Query:  310 MVYPVRGITSLSALSEGNEEGGGGDHDTREAAGGSPAADEIHAVQDEIRGVEAMIEDVEKETKKVAKKIDDVEAAFAGGSGYLGITDPEALSKEKGQLRREEQLRXXXXXXXXXXXXXPE-------QLLLEEKVRLSRMKQLRANNAPA 738
            M YPVRG+T LSA+SEG+EE GGGDH  REAA   PAADEI AVQDEIRGVE  IED E+ET +V KKIDD+EAA AGG+ YLG+TDPEAL K+  QLRR     XXXXXXXXXXXXX         +LLL+ + RLSR +Q RANNAPA
Sbjct:    1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQLEQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_P-littoralis_Contig888.15.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 2.190e-38
Identity = 98/140 (70.00%), Postives = 113/140 (80.71%), Query Frame = 1 
Query:  331 ITSLSALSEGNEEGGGGDHDTREAAGGSPAADEIHAVQDEIRGVEAMIEDVEKETKKVAKKIDDVEAAFAGGSGYLGITDPEALSKEKGQLRREEQLRXXXXXXXXXXXXXPE----QLLLEEKVRLSRMKQLRANNAPA 738
            +TSLSA+SEG+EE GGGDHD REAA   PAADEI AVQD+IRGVE   ED EKET +V KKIDD+EAA AGGS YLG+TDPEAL K+ G  R+EEQ  XXXXXXXXXXXXX E    +LLL+++ R SR++QLRANNAPA
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLG--RKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPA 138
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BLAST of mRNA_P-littoralis_Contig888.15.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.180e-33
Identity = 97/144 (67.36%), Postives = 104/144 (72.22%), Query Frame = 1 
Query:  310 MVYPVRGITSLSALSEGNEEGGGGDHDTREAAGGSPAADEIHAVQDEIRGVEAMIEDVEKETKKVAKKIDDVEAA-FAGGSGYLGITDPEALSKEKGQLRREEQLRXXXXXXXXXXXXXPEQLLLEEKVRLSRMKQLRANNAPA 738
            MVYPVRGITSLSALSEGNEE GGGDHDTREAAGGSPAADEI AVQ                      KIDDVEAA  AGGSGYLG+TDPEAL KEK      E+L XXXXXXXXXXXXX  Q+L++EK RL  ++Q RANNAPA
Sbjct:    1 MVYPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKEK------ERLGXXXXXXXXXXXXXXXQVLVKEK-RLFSIEQRRANNAPA 137
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BLAST of mRNA_P-littoralis_Contig888.15.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 4.940e-29
Identity = 84/145 (57.93%), Postives = 99/145 (68.28%), Query Frame = 1 
Query:  331 ITSLSALSEGNEEGGGGDHDTREAAGGSPAADEIHAVQDEIRGVEAMIED-------VEKETKKVAKKIDDVEAAFAGGSGYLGITDPEALSKEKGQLRREEQLRXXXXXXXXXXXXXPEQ--LLLEEKVRLSRMKQLRANNAPA 738
            +TS SA+SEG+EE GGGDHD REAA GSPAADEI AVQ                    E+ET +V KKID +EAA AGGS YLG+TDPEAL K+ G  R+EEQLR      XXXXXXX     +LL+++ RLSR++QLRANNAPA
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLG--RKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPA 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig888.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM56_ECTSI1.130e-5564.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI9.300e-4166.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI2.190e-3870.00Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI1.180e-3367.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI4.940e-2957.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig888contigP-littoralis_Contig888:50726..51464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size739
Hectar predicted targeting categorysignal anchor
Exons1
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791775.1169062-CDS-P-littoralis_Contig888:50726..514641680791775.1169062-CDS-P-littoralis_Contig888:50726..51464Pylaiella littoralis U1_48CDSP-littoralis_Contig888 50727..51464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig888.15.1prot_P-littoralis_Contig888.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig888 50727..51464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig888.15.1

>prot_P-littoralis_Contig888.15.1 ID=prot_P-littoralis_Contig888.15.1|Name=mRNA_P-littoralis_Contig888.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
ISCKQDASSSPSATPPPPPPDSWPPPLAIRSNYSTMSRHCVSALLLVCIA
QACLAFVPSWTARLRSSRSQPPASTPAAVTSSLSQPSGATFLVFGTFGAC
GAHMVYPVRGITSLSALSEGNEEGGGGDHDTREAAGGSPAADEIHAVQDE
IRGVEAMIEDVEKETKKVAKKIDDVEAAFAGGSGYLGITDPEALSKEKGQ
LRREEQLRKEEEQLRKEEEQLPEQLLLEEKVRLSRMKQLRANNAPA
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mRNA from alignment at P-littoralis_Contig888:50726..51464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig888.15.1 ID=mRNA_P-littoralis_Contig888.15.1|Name=mRNA_P-littoralis_Contig888.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=739bp|location=Sequence derived from alignment at P-littoralis_Contig888:50726..51464- (Pylaiella littoralis U1_48)
ATCAGCTGCAAGCAAGATGCAAGCTCATCACCGTCCGCCACCCCGCCGCC
GCCACCGCCGGATTCCTGGCCGCCCCCTCTTGCTATACGGAGCAACTACT
CTACCATGTCAAGGCATTGTGTGTCAGCTCTTCTCCTGGTTTGTATCGCA
CAAGCATGTCTGGCCTTCGTCCCGAGCTGGACTGCGAGGTTGAGGTCGTC
ACGCTCGCAACCCCCTGCTTCAACGCCTGCGGCGGTAACGTCTTCGCTCT
CGCAGCCCTCTGGTGCGACCTTCCTTGTGTTCGGGACGTTTGGCGCTTGT
GGGGCGCACATGGTTTACCCGGTGCGAGGGATCACGAGCTTGAGCGCGCT
GAGCGAGGGCAATGAGGAGGGGGGCGGCGGCGATCATGATACACGAGAAG
CGGCGGGCGGCAGTCCGGCGGCGGACGAGATCCATGCGGTCCAGGATGAG
ATCCGTGGTGTCGAGGCCATGATCGAGGATGTCGAGAAGGAGACGAAAAA
GGTAGCCAAGAAGATTGATGATGTTGAGGCTGCTTTTGCTGGGGGCTCCG
GGTACCTCGGAATTACCGACCCCGAAGCCCTGTCGAAGGAGAAGGGGCAA
CTACGCAGGGAGGAGCAGCTCCGCAAGGAGGAGGAGCAGCTCCGCAAGGA
GGAGGAGCAACTACCCGAACAGCTCCTTTTAGAGGAGAAGGTCCGCCTCT
CCAGGATGAAGCAGCTCCGCGCCAACAACGCCCCGGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig888:50726..51464-

>mRNA_P-littoralis_Contig888.15.1 ID=mRNA_P-littoralis_Contig888.15.1|Name=mRNA_P-littoralis_Contig888.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig888:50726..51464- (Pylaiella littoralis U1_48)
ATCAGCTGCAAGCAAGATGCAAGCTCATCACCGTCCGCCACCCCGCCGCC
GCCACCGCCGGATTCCTGGCCGCCCCCTCTTGCTATACGGAGCAACTACT
CTACCATGTCAAGGCATTGTGTGTCAGCTCTTCTCCTGGTTTGTATCGCA
CAAGCATGTCTGGCCTTCGTCCCGAGCTGGACTGCGAGGTTGAGGTCGTC
ACGCTCGCAACCCCCTGCTTCAACGCCTGCGGCGGTAACGTCTTCGCTCT
CGCAGCCCTCTGGTGCGACCTTCCTTGTGTTCGGGACGTTTGGCGCTTGT
GGGGCGCACATGGTTTACCCGGTGCGAGGGATCACGAGCTTGAGCGCGCT
GAGCGAGGGCAATGAGGAGGGGGGCGGCGGCGATCATGATACACGAGAAG
CGGCGGGCGGCAGTCCGGCGGCGGACGAGATCCATGCGGTCCAGGATGAG
ATCCGTGGTGTCGAGGCCATGATCGAGGATGTCGAGAAGGAGACGAAAAA
GGTAGCCAAGAAGATTGATGATGTTGAGGCTGCTTTTGCTGGGGGCTCCG
GGTACCTCGGAATTACCGACCCCGAAGCCCTGTCGAAGGAGAAGGGGCAA
CTACGCAGGGAGGAGCAGCTCCGCAAGGAGGAGGAGCAGCTCCGCAAGGA
GGAGGAGCAACTACCCGAACAGCTCCTTTTAGAGGAGAAGGTCCGCCTCT
CCAGGATGAAGCAGCTCCGCGCCAACAACGCCCCGGCA
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