mRNA_P-littoralis_Contig888.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig888.44.1
Unique NamemRNA_P-littoralis_Contig888.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig888.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig888contigP-littoralis_Contig888:103085..103546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size462
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791775.0483048-CDS-P-littoralis_Contig888:103084..1034891680791775.0483048-CDS-P-littoralis_Contig888:103084..103489Pylaiella littoralis U1_48CDSP-littoralis_Contig888 103085..103489 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791775.0692086-UTR-P-littoralis_Contig888:103489..1035461680791775.0692086-UTR-P-littoralis_Contig888:103489..103546Pylaiella littoralis U1_48UTRP-littoralis_Contig888 103490..103546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig888.44.1prot_P-littoralis_Contig888.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig888 103085..103489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig888.44.1

>prot_P-littoralis_Contig888.44.1 ID=prot_P-littoralis_Contig888.44.1|Name=mRNA_P-littoralis_Contig888.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MAPRTYDAGAAPTTAHTCVHEATPERMASGTYPTKVLVESLNLPGGDRVV
HEQLKFVAEHHTARTRAFATTASRLVGRLHCSHGVEKPEPLPVIKNRDER
CKAARDHRRAPSGAHSCCLDGVCEGNSREARECTY
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mRNA from alignment at P-littoralis_Contig888:103085..103546-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig888.44.1 ID=mRNA_P-littoralis_Contig888.44.1|Name=mRNA_P-littoralis_Contig888.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig888:103085..103546- (Pylaiella littoralis U1_48)
AACAATTGTCAAACAAGCGGTTAGGGAGGCAAAAGTTTAGCTACTGGGGG
TCACGTGATGGCGCCGCGTACATACGATGCAGGCGCTGCACCAACAACAG
CCCACACATGCGTCCACGAAGCTACACCAGAGAGAATGGCGAGCGGAACA
TACCCGACCAAGGTGTTAGTGGAGAGCCTCAATCTTCCAGGTGGCGATCG
AGTTGTACACGAGCAGCTCAAGTTTGTGGCAGAACATCACACGGCTCGGA
CCAGGGCGTTCGCTACAACTGCAAGCCGCCTTGTGGGCCGGCTACACTGC
TCTCACGGCGTGGAGAAGCCCGAGCCTCTCCCTGTCATCAAAAACCGGGA
TGAGCGATGCAAGGCGGCGAGGGACCACCGGCGTGCACCAAGCGGAGCTC
ATAGCTGCTGTCTCGATGGAGTCTGTGAAGGCAACAGCCGAGAAGCGCGG
GAGTGTACGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig888:103085..103546-

>mRNA_P-littoralis_Contig888.44.1 ID=mRNA_P-littoralis_Contig888.44.1|Name=mRNA_P-littoralis_Contig888.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig888:103085..103546- (Pylaiella littoralis U1_48)
ATGGCGCCGCGTACATACGATGCAGGCGCTGCACCAACAACAGCCCACAC
ATGCGTCCACGAAGCTACACCAGAGAGAATGGCGAGCGGAACATACCCGA
CCAAGGTGTTAGTGGAGAGCCTCAATCTTCCAGGTGGCGATCGAGTTGTA
CACGAGCAGCTCAAGTTTGTGGCAGAACATCACACGGCTCGGACCAGGGC
GTTCGCTACAACTGCAAGCCGCCTTGTGGGCCGGCTACACTGCTCTCACG
GCGTGGAGAAGCCCGAGCCTCTCCCTGTCATCAAAAACCGGGATGAGCGA
TGCAAGGCGGCGAGGGACCACCGGCGTGCACCAAGCGGAGCTCATAGCTG
CTGTCTCGATGGAGTCTGTGAAGGCAACAGCCGAGAAGCGCGGGAGTGTA
CGTAC
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