mRNA_P-littoralis_Contig1206.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1206.8.1
Unique NamemRNA_P-littoralis_Contig1206.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.160e-50
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 1
Query:  313 EDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVAAF 798
            +DVA +W+  AE +  + N   +   L  IAA +    R A  AAA+AV  R+C H+TPP PLP +  L +R+AA +QH GLCG +HA+ I NI    V ERA G  ITTK +RNQACY+AGT LNA G GVQL+RQECFT+ACRAVWP D+PL  AV+AA 
Sbjct:   35 DDVAAFWQHHAEGFCPQGNPLKVWEELLLIAAQTPERFREAMQAAAVAVGARYCNHDTPPGPLPDIGKLPERQAAVQQHAGLCGKYHAEHIANIDVTMVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDDQPLPVAVLAAL 196          
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.580e-47
Identity = 84/160 (52.50%), Postives = 108/160 (67.50%), Query Frame = 1
Query:  313 EDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVA 792
            +DVA +W+  AE +  + N   +   L  +AA +    R A  AAA+AV  R+C H+TPP PLP ++ L +R+AA +QH GLCG +HA+ I NI    V ERA G  ITTK +RNQACY+AGT LNA G GVQL+RQECFT+AC AVWP D+PL  A +A
Sbjct:    5 DDVAAFWQHHAEGFCPQGNPLKVWEELLLMAAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAVQQHAGLCGKYHAEHIANIDVTRVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACCAVWPDDQPLPAAKLA 164          
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 3.520e-44
Identity = 77/133 (57.89%), Postives = 95/133 (71.43%), Query Frame = 1
Query:  400 IAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVAAF 798
            IAA +    R A  AAA+AV  R+C H+TPP PLP ++ L +R+AAA+QH GLCG +HA+ I NI    V  RA G  ITTK +RN+ACY+AGT LNA G GVQL+RQ+CFT ACRAVWP D+PL  AV+ A 
Sbjct:   45 IAAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVETRAAGAEITTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPLPAAVLDAL 177          
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.650e-44
Identity = 81/151 (53.64%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  313 EDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGD 765
            +DVA +W+  AE +  + N  N+   L  IAA +    R A  AAA+AV  R+C H+TPP PLP ++ L + +AAA+QH G CG +H + I NI    V ERA G  ITTK +RNQACY+AGT LNA G GVQL+RQECFT+ACRAVWP D
Sbjct:  139 DDVAAFWQHHAEGFCPQGNPLNVWEELLLIAAQTPEGFREALQAAAVAVGARYCNHDTPPGPLPDISKLPEMQAAAQQHAGSCGKYHGEHIANIDVTMVKERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 289          
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5KLA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA7_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.140e-29
Identity = 63/127 (49.61%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  313 EDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNA 693
            +DVA +W+  AE +  + N  ++   L  IAA +    R A  AAA+AV  R+C H+TPP PLP ++ L +R+AAA+QH GLCG +HA+ I NI    V ER  G  ITTK +RNQACY+AGT LNA
Sbjct:   31 DDVAAFWQHHAEGFCPQGNPLHVWQELLLIAARTPVRFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVEERVAGAEITTKRMRNQACYDAGTALNA 157          
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.190e-28
Identity = 58/122 (47.54%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  421 LLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAV 786
            LLR      A  V   +C H+T P P+P M     ++AAA +HPGLCGVHHA  I  +  + V  R+ G     K  RNQACY+ G  +N  G GVQLKR +CFT ACRAVWPG+E ++ +V
Sbjct:   40 LLRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAA-EHPGLCGVHHAHIIAAVRTEDVTSRS-GFTAANK-FRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEASV 158          
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.330e-23
Identity = 54/116 (46.55%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  457 VARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVAAFLR 804
            V  R+C+H + P PL  M++  KR+ AA  HPGLCGV+HA  I  +    V E+      T    RNQACY     +NA G GVQL R ECFT+ACRA+ PG   +   VV AF R
Sbjct:  121 VGARYCSHVSAPEPLEDMSHA-KRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQT--TGNKYRNQACYNGAEAVNARGAGVQLPRAECFTRACRALLPGSGEMDPLVVEAFHR 233          
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5K7F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F9_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 6.800e-22
Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 1
Query:  313 EDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGP 702
            +DVA +W+  AE +  + N  ++   L   AA      R A  AAA+AV  R+C H++PP PLP ++ L +R+AAA+QH GLCG +H++ I NI    V ERA G  ITTK +RNQ       G+    P
Sbjct:    5 DDVAAFWQHHAEGFCPQGNPLHVWQELLLAAARRPERFREALQAAAVAVGARYCNHDSPPGPLPDISELPERQAAARQHAGLCGKYHSEHIANIDVTMVEERAAGTEITTKRMRNQCLLRRRDGVQRPRP 134          
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.750e-20
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  529 RAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVAAF 798
            + AA +HPGLCGV+HA  I  +    V+ R+          RNQACY+    +NA G GVQLKR+ECFT  CRA+WPG      +VV AF
Sbjct:   10 KVAAAEHPGLCGVYHAHIIAAVKIQDVLARSGST--AANKYRNQACYDGEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAF 97          
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5JI26_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI26_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.080e-19
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  607 VVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVAAF 798
            V ERA G  ITTK + NQACY+AG  LNA G GVQL+ QEC T+ACRAVWP D+PL  AV+AA 
Sbjct:    2 VEERAAGAEITTKRMMNQACYDAGMALNARGRGVQLRSQECSTQACRAVWPDDQPLPAAVLAAL 65          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KJS7_9PHAE2.160e-5054.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD0_9PHAE1.580e-4752.50Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXC7_9PHAE3.520e-4457.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE3.650e-4453.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA7_9PHAE1.140e-2949.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE5.190e-2847.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH50_9PHAE5.330e-2346.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7F9_9PHAE6.800e-2241.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T9_9PHAE1.750e-2047.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI26_9PHAE1.080e-1965.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1206contigP-littoralis_Contig1206:42036..43818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size833
Hectar predicted targeting categoryother localisation
Exons3
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.3348901-UTR-P-littoralis_Contig1206:42035..422461680789517.3348901-UTR-P-littoralis_Contig1206:42035..42246Pylaiella littoralis U1_48UTRP-littoralis_Contig1206 42036..42246 +
1680789517.3475413-UTR-P-littoralis_Contig1206:42269..423611680789517.3475413-UTR-P-littoralis_Contig1206:42269..42361Pylaiella littoralis U1_48UTRP-littoralis_Contig1206 42270..42361 +
1680789517.3761716-UTR-P-littoralis_Contig1206:43792..438181680789517.3761716-UTR-P-littoralis_Contig1206:43792..43818Pylaiella littoralis U1_48UTRP-littoralis_Contig1206 43793..43818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.357058-CDS-P-littoralis_Contig1206:42361..427181680789517.357058-CDS-P-littoralis_Contig1206:42361..42718Pylaiella littoralis U1_48CDSP-littoralis_Contig1206 42362..42718 +
1680789517.3650746-CDS-P-littoralis_Contig1206:43645..437921680789517.3650746-CDS-P-littoralis_Contig1206:43645..43792Pylaiella littoralis U1_48CDSP-littoralis_Contig1206 43646..43792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1206.8.1prot_P-littoralis_Contig1206.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1206 42362..43792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1206.8.1

>prot_P-littoralis_Contig1206.8.1 ID=prot_P-littoralis_Contig1206.8.1|Name=mRNA_P-littoralis_Contig1206.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=168bp
MNEEDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAAL
AVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYD
AVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAV
WPGDEPLQEAVVAAFLR*
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mRNA from alignment at P-littoralis_Contig1206:42036..43818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1206.8.1 ID=mRNA_P-littoralis_Contig1206.8.1|Name=mRNA_P-littoralis_Contig1206.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1783bp|location=Sequence derived from alignment at P-littoralis_Contig1206:42036..43818+ (Pylaiella littoralis U1_48)
TAAATAGATTGTTTCCGATGCCACTGGTAAAAACATTTATCCTCACCGAA GGCAGGGGGCTTCTCGCTCTTGTCTATTTCTGGTATGTTACATACATCCA CAAAAGGAAGTTGCCCACTATTTGTGGTATGTATGAAAGATGCACCAAAG CAGCGCCGTCTAAAAAGCAATCAATTGTTTGTTCGTAAAAAAAAAGGAAG TGAGCATCCAGGTACGGCTGAATAAAACCCACAGGGTAGTCTACCAAGCT TGCGAATACACCATCGCCTTAGAGCGCACAGGCACACAAGGTTTGCCGAT ACACCGCATTTTACTGCTGCCGCGCCATGAACGAGGAAGATGTTGCTCAG TATTGGGAAGCACAAGCTGAAGAGTGGGATGAGAAAGAAAACGGCAGCAA TATCGCGAATGCTCTGCAAACAATCGCCGCCGACTCGGACCACCTTCTGC GGGGGGCCACAACAGCCGCGGCACTTGCCGTCGCCCGCCGCTTCTGTACG CACGAGACGCCCCCCCCGCCGCTGCCTAAAATGACGAACTTGGGAAAAAG GAGAGCCGCGGCTAAGCAACATCCCGGACTTTGTGGTGTTCACCACGCAC AGTTCATCGGCAACATATCATATGATGCTGTCGTGGAGAGGGCTCGTGGC GTTTTGATCACGACGAAGACTCTACGCAACCAGGTACAGCAGTAAGGAAA AACTAAGGCCCTGTCTAATCATTCCGGATTTTTGCCGGGAAACAGAGAAC CATTCCCGGGAAATATGAACTGAGTTTCGCTCTGTTCTAAACGATTGGGC GAGTATTTGTTTTCAAAATGCCTTTTATCTGTTTTTTATCCTGAAGCCCG AGCTTCTTCCCGCCCACAGCAGTCACGCCGCATCCGAACTCTAGACGCCA AGCGAAGCATCCAAAGGCGCTTCCTCCCATCAGCCATGGCCTTGGGGCGA CCCTGTGAACTCACTGTGTGGTTGTGTGGCCTGGGGATGGCGTGTATACG ACAGCTCGTGTGAACTGAGCACCTATGCAGGCGTGCCCGAACTTGGAGGC ACGTCTGCCCGAAATGCGGGTTCAAATTTCCGGGAACCCTGAAAGGAGTA TTTCGAGATTTTTTGGGCAGTGCTCATTTCAGGGAAACCGAGAAGAACGC CTGCATATTGTCGGAGATTTTAGGTTTCCAGGAATGGTTCTCTGTTTCCC GGCAAAAATCCGCAATGATTAGACAGACCCTAAAAACATACGGAGTACTT CGTTTATCGGAGTATTCTGCTTGGACGAACCTTTTACACACTCATGCGTG CATTTCTCGGGAGTGAACACACAAAAAACATACACCGAGTACATATTATT ACTACTCCGGAGTATATGCGAAGCATGTATGATTCGGTGTACTGCTGTGG AGAATATGATACTACTGCTGTAACAGAAGTATTTTGAAGGGCCCAGCACC TGAAAAACACCAATCTAAATAATACCTGGCATTTCGGCAATATTTTATAC CAGGTACCTGGTATCATATGATATGATACTATTGTACTCATGATGTAATA TACGAATTATATGTACAGCAGTATTGAAAAAAACAGCGTGCGTATTCCCA ACAAATTCAGGCCTGCTACGAGGCGGGAACGGGGCTGAACGCAACGGGGC CCGGAGTCCAGCTCAAGAGGCAGGAGTGCTTCACAAAAGCATGCCGGGCT GTGTGGCCTGGTGATGAACCTCTGCAGGAGGCCGTTGTTGCGGCTTTCTT GCGCTGATACCAAGCTGATCCAGATCGGAGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1206:42036..43818+

>mRNA_P-littoralis_Contig1206.8.1 ID=mRNA_P-littoralis_Contig1206.8.1|Name=mRNA_P-littoralis_Contig1206.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig1206:42036..43818+ (Pylaiella littoralis U1_48)
ATGAACGAGGAAGATGTTGCTCAGTATTGGGAAGCACAAGCTGAAGAGTG
GGATGAGAAAGAAAACGGCAGCAATATCGCGAATGCTCTGCAAACAATCG
CCGCCGACTCGGACCACCTTCTGCGGGGGGCCACAACAGCCGCGGCACTT
GCCGTCGCCCGCCGCTTCTGTACGCACGAGACGCCCCCCCCGCCGCTGCC
TAAAATGACGAACTTGGGAAAAAGGAGAGCCGCGGCTAAGCAACATCCCG
GACTTTGTGGTGTTCACCACGCACAGTTCATCGGCAACATATCATATGAT
GCTGTCGTGGAGAGGGCTCGTGGCGTTTTGATCACGACGAAGACTCTACG
CAACCAGGCCTGCTACGAGGCGGGAACGGGGCTGAACGCAACGGGGCCCG
GAGTCCAGCTCAAGAGGCAGGAGTGCTTCACAAAAGCATGCCGGGCTGTG
TGGCCTGGTGATGAACCTCTGCAGGAGGCCGTTGTTGCGGCTTTCTTGCG
CTGA
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